C18h5orf63 (similar to human chromosome 5 open reading frame 63) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: C18h5orf63 (similar to human chromosome 5 open reading frame 63) Rattus norvegicus
Analyze
Symbol: C18h5orf63 (Ensembl: LOC100174910)
Name: similar to human chromosome 5 open reading frame 63 (Ensembl:glutaredoxin-like protein)
RGD ID: 2299854
Description: Predicted to be located in mitochondrion. Orthologous to human C5orf63 (chromosome 5 open reading frame 63); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glutaredoxin-like protein; glutaredoxin-like protein C5orf63 homolog; glutaredoxin-like protein YDR286C homolog; LOC100174910; MGC188899; MGC188903
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,622,143 - 52,640,110 (-)NCBIGRCr8
mRatBN7.21850,424,079 - 50,442,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,424,079 - 50,441,973 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,462,208 - 52,478,213 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01853,170,189 - 53,186,209 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,968,077 - 50,984,082 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01852,031,825 - 52,049,756 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1852,031,842 - 52,047,816 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01851,225,467 - 51,243,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,717,592 - 52,733,574 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1848,564,095 - 48,580,041 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:34800366  


Genomics

Comparative Map Data
C18h5orf63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,622,143 - 52,640,110 (-)NCBIGRCr8
mRatBN7.21850,424,079 - 50,442,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,424,079 - 50,441,973 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,462,208 - 52,478,213 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01853,170,189 - 53,186,209 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,968,077 - 50,984,082 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01852,031,825 - 52,049,756 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1852,031,842 - 52,047,816 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01851,225,467 - 51,243,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,717,592 - 52,733,574 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1848,564,095 - 48,580,041 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
C5orf63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385127,042,562 - 127,073,502 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5127,045,235 - 127,073,506 (-)EnsemblGRCh38hg38GRCh38
GRCh375126,378,254 - 126,409,194 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365126,411,112 - 126,435,214 (-)NCBINCBI36Build 36hg18NCBI36
Celera5122,507,919 - 122,538,849 (-)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5121,569,847 - 121,600,778 (-)NCBIHuRef
CHM1_15125,811,067 - 125,841,997 (-)NCBICHM1_1
T2T-CHM13v2.05127,562,642 - 127,593,579 (-)NCBIT2T-CHM13v2.0
C330018D20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391857,088,900 - 57,108,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1857,088,905 - 57,108,440 (-)EnsemblGRCm39 Ensembl
GRCm381856,955,828 - 56,975,379 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,955,833 - 56,975,368 (-)EnsemblGRCm38mm10GRCm38
MGSCv371857,115,482 - 57,135,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361857,082,435 - 57,100,748 (-)NCBIMGSCv36mm8
Celera1858,265,123 - 58,284,633 (-)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1831.22NCBI
LOC102028408
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955415144,961 - 149,546 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955415144,503 - 163,777 (-)NCBIChiLan1.0ChiLan1.0
C4H5orf63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24122,349,026 - 122,378,552 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15120,488,586 - 120,518,112 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05122,453,035 - 122,479,383 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15128,218,977 - 128,247,118 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5128,221,026 - 128,247,118 (-)Ensemblpanpan1.1panPan2
C11H5orf63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,224,495 - 16,255,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,235,346 - 16,254,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,013,490 - 15,047,699 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,947,296 - 16,981,513 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,961,597 - 16,966,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,677,174 - 15,711,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,523,982 - 15,558,195 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01116,121,136 - 16,155,348 (-)NCBIUU_Cfam_GSD_1.0
CUNH5orf63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213138,828,611 - 138,848,660 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936504402,431 - 406,982 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936504402,584 - 422,633 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H5orf63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2130,050,628 - 130,072,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12130,050,623 - 130,072,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,347,705 - 135,369,267 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12330,006,518 - 30,028,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2330,005,947 - 30,028,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603448,026,891 - 48,052,116 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477414,559,972 - 14,607,765 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C18h5orf63
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:187
Interacting mature miRNAs:216
Transcripts:ENSRNOT00000018368
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001131003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB736776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018368   ⟹   ENSRNOP00000018368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1850,424,079 - 50,441,973 (-)Ensembl
Rnor_6.0 Ensembl1852,031,842 - 52,047,816 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077491   ⟹   ENSRNOP00000070281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1852,031,842 - 52,047,816 (-)Ensembl
RefSeq Acc Id: NM_001131003   ⟹   NP_001124475
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,143 - 52,640,032 (-)NCBI
mRatBN7.21850,424,079 - 50,441,970 (-)NCBI
Rnor_6.01852,031,834 - 52,047,816 (-)NCBI
Rnor_5.01851,225,467 - 51,243,496 (-)NCBI
RGSC_v3.41852,717,592 - 52,733,574 (-)RGD
Celera1848,564,095 - 48,580,041 (-)RGD
Sequence:
RefSeq Acc Id: NM_001419689   ⟹   NP_001406618
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,143 - 52,640,032 (-)NCBI
mRatBN7.21850,424,079 - 50,441,970 (-)NCBI
RefSeq Acc Id: NM_001419690   ⟹   NP_001406619
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,143 - 52,640,032 (-)NCBI
mRatBN7.21850,424,079 - 50,441,970 (-)NCBI
RefSeq Acc Id: NM_001419691   ⟹   NP_001406620
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,143 - 52,640,032 (-)NCBI
mRatBN7.21850,424,079 - 50,441,970 (-)NCBI
RefSeq Acc Id: XM_006254736   ⟹   XP_006254798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,640,100 (-)NCBI
mRatBN7.21850,424,079 - 50,442,046 (-)NCBI
Rnor_6.01852,031,825 - 52,049,755 (-)NCBI
Rnor_5.01851,225,467 - 51,243,496 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096518   ⟹   XP_038952446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,640,105 (-)NCBI
mRatBN7.21850,428,442 - 50,442,172 (-)NCBI
RefSeq Acc Id: XM_063277034   ⟹   XP_063133104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,638,597 (-)NCBI
RefSeq Acc Id: XM_063277035   ⟹   XP_063133105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,638,595 (-)NCBI
RefSeq Acc Id: XM_063277036   ⟹   XP_063133106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,640,103 (-)NCBI
RefSeq Acc Id: XM_063277037   ⟹   XP_063133107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,638,595 (-)NCBI
RefSeq Acc Id: XM_063277038   ⟹   XP_063133108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,638,597 (-)NCBI
RefSeq Acc Id: XM_063277039   ⟹   XP_063133109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,638,595 (-)NCBI
RefSeq Acc Id: XM_063277040   ⟹   XP_063133110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81852,622,148 - 52,640,110 (-)NCBI
RefSeq Acc Id: NP_001124475   ⟸   NM_001131003
- Peptide Label: isoform 1
- UniProtKB: G3V7R5 (UniProtKB/TrEMBL),   A6IX72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254798   ⟸   XM_006254736
- Peptide Label: isoform X1
- UniProtKB: G3V7R5 (UniProtKB/TrEMBL),   A6IX72 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018368   ⟸   ENSRNOT00000018368
Ensembl Acc Id: ENSRNOP00000070281   ⟸   ENSRNOT00000077491
RefSeq Acc Id: XP_038952446   ⟸   XM_039096518
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001406618   ⟸   NM_001419689
- Peptide Label: isoform 2
- UniProtKB: B2RYV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406619   ⟸   NM_001419690
- Peptide Label: isoform 1
- UniProtKB: G3V7R5 (UniProtKB/TrEMBL),   A6IX72 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406620   ⟸   NM_001419691
- Peptide Label: isoform 1
- UniProtKB: G3V7R5 (UniProtKB/TrEMBL),   A6IX72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133110   ⟸   XM_063277040
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133106   ⟸   XM_063277036
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133108   ⟸   XM_063277038
- Peptide Label: isoform X3
- UniProtKB: B2RYV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133104   ⟸   XM_063277034
- Peptide Label: isoform X1
- UniProtKB: A6IX72 (UniProtKB/TrEMBL),   G3V7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133107   ⟸   XM_063277037
- Peptide Label: isoform X3
- UniProtKB: B2RYV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133105   ⟸   XM_063277035
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133109   ⟸   XM_063277039
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7R5-F1-model_v2 AlphaFold G3V7R5 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2299854 AgrOrtholog
BioCyc Gene G2FUF-7433 BioCyc
Ensembl Genes ENSRNOG00000013738 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018368.8 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Glutaredoxin-like UniProtKB/TrEMBL
  Glutaredoxin-like_YDR286C UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report rno:100174910 UniProtKB/TrEMBL
NCBI Gene 100174910 ENTREZGENE
PANTHER GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG UniProtKB/TrEMBL
  GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG UniProtKB/TrEMBL
Pfam DUF836 UniProtKB/TrEMBL
PhenoGen C18h5orf63 PhenoGen
RatGTEx ENSRNOG00000013738 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A6IX72 ENTREZGENE, UniProtKB/TrEMBL
  B2RYV3 ENTREZGENE, UniProtKB/TrEMBL
  G3V7R5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C18h5orf63  similar to human chromosome 5 open reading frame 63  LOC100174910  glutaredoxin-like protein  Symbol and Name Changed 1299863 APPROVED
2008-08-15 LOC100174910  glutaredoxin-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL