Magi1 (membrane associated guanylate kinase, WW and PDZ domain containing 1) - Rat Genome Database

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Gene: Magi1 (membrane associated guanylate kinase, WW and PDZ domain containing 1) Rattus norvegicus
Analyze
Symbol: Magi1
Name: membrane associated guanylate kinase, WW and PDZ domain containing 1
RGD ID: 1586025
Description: Predicted to enable alpha-actinin binding activity. Predicted to be involved in positive regulation of cell-cell adhesion and signal transduction. Predicted to be located in several cellular components, including adherens junction; nuclear lumen; and plasma membrane. Predicted to be active in cell-cell junction and cytoplasm. Orthologous to human MAGI1 (membrane associated guanylate kinase, WW and PDZ domain containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BAI1-associated protein 1; Baiap1; BAP-1; LOC500261; MAGI-1; membrane associated guanylate kinase 1 b NT-short isoform; membrane-associated guanylate kinase inverted 1; membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84127,762,590 - 128,368,228 (-)NCBIGRCr8
mRatBN7.24126,205,663 - 126,811,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4126,206,816 - 126,811,691 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4131,676,416 - 132,280,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04127,450,842 - 128,054,831 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04126,075,381 - 126,679,346 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04125,684,816 - 126,300,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4125,687,307 - 125,958,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04190,203,221 - 190,812,582 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44127,975,386 - 128,597,119 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4115,124,711 - 115,720,952 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
deguelin  (ISO)
diclofenac  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gemcitabine  (ISO)
genistein  (EXP)
hemin  (ISO)
hydroquinone  (ISO)
irinotecan  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
methamphetamine  (ISO)
methapyrilene  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulindac sulfide  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
adherens junction  (IEA,ISO,ISS)
bicellular tight junction  (IEA)
cell junction  (ISO)
cell periphery  (ISO)
cell projection  (IEA,ISO)
cell-cell junction  (IBA,ISO)
cytoplasm  (IBA,IEA,ISO)
membrane  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Ribosomal S6 kinase 2 interacts with and phosphorylates PDZ domain-containing proteins and regulates AMPA receptor transmission. Thomas GM, etal., Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):15006-11. Epub 2005 Oct 10.
Additional References at PubMed
PMID:9395497   PMID:15458844   PMID:15908431   PMID:16464232   PMID:18303016   PMID:20298433   PMID:21426345   PMID:22166940   PMID:22605569   PMID:29476059   PMID:30860870   PMID:38325349  


Genomics

Comparative Map Data
Magi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84127,762,590 - 128,368,228 (-)NCBIGRCr8
mRatBN7.24126,205,663 - 126,811,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4126,206,816 - 126,811,691 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4131,676,416 - 132,280,372 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04127,450,842 - 128,054,831 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04126,075,381 - 126,679,346 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04125,684,816 - 126,300,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4125,687,307 - 125,958,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04190,203,221 - 190,812,582 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44127,975,386 - 128,597,119 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4115,124,711 - 115,720,952 (-)NCBICelera
Cytogenetic Map4q34NCBI
MAGI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38365,353,526 - 66,038,918 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl365,353,525 - 66,038,918 (-)EnsemblGRCh38hg38GRCh38
GRCh37365,339,201 - 66,024,593 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36365,314,946 - 65,999,549 (-)NCBINCBI36Build 36hg18NCBI36
Build 34365,321,089 - 65,999,265NCBI
Celera365,356,153 - 66,040,780 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef365,437,034 - 66,121,819 (-)NCBIHuRef
CHM1_1365,289,925 - 65,975,909 (-)NCBICHM1_1
T2T-CHM13v2.0365,397,166 - 66,082,942 (-)NCBIT2T-CHM13v2.0
Magi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39693,652,434 - 94,260,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl693,652,436 - 94,260,898 (-)EnsemblGRCm39 Ensembl
GRCm38693,675,453 - 94,283,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl693,675,455 - 94,283,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv37693,625,449 - 94,233,898 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36693,643,498 - 94,249,367 (-)NCBIMGSCv36mm8
Celera695,559,133 - 96,179,163 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map642.7NCBI
Magi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495551755,091 - 655,638 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495551754,699 - 654,398 (+)NCBIChiLan1.0ChiLan1.0
MAGI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2265,277,524 - 65,952,915 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1365,282,311 - 65,957,377 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0365,257,763 - 65,932,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1366,632,730 - 67,303,854 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl366,635,580 - 66,757,358 (-)Ensemblpanpan1.1panPan2
MAGI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12025,314,597 - 25,952,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2025,314,923 - 25,949,921 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2025,239,937 - 25,879,104 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02025,354,604 - 25,993,500 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2025,355,304 - 25,990,576 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12025,051,678 - 25,685,908 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02025,399,375 - 26,040,537 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02025,459,448 - 26,096,907 (+)NCBIUU_Cfam_GSD_1.0
LOC101962705
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118162,642,831 - 162,765,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936637560,298 - 1,151,850 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936637985,706 - 1,154,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1346,897,903 - 47,567,717 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11346,896,515 - 47,568,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21351,684,581 - 52,291,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAGI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12226,383,310 - 27,057,081 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2226,384,511 - 26,645,528 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041139,752,144 - 140,429,908 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Magi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462488846,214 - 687,291 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462488846,089 - 686,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Magi1
2369 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:30
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000037848, ENSRNOT00000071315
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat

Markers in Region
D4Mgh18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,395,976 - 126,396,065 (+)MAPPERmRatBN7.2
mRatBN7.21862,057,116 - 62,057,171 (+)MAPPERmRatBN7.2
Rnor_6.04125,884,464 - 125,884,552NCBIRnor6.0
Rnor_5.04190,397,443 - 190,397,531UniSTSRnor5.0
RGSC_v3.44128,179,957 - 128,180,046RGDRGSC3.4
RGSC_v3.44128,179,958 - 128,180,046UniSTSRGSC3.4
RGSC_v3.14128,424,798 - 128,424,887RGD
Celera4115,307,251 - 115,307,339UniSTS
RH 3.4 Map4757.7UniSTS
RH 3.4 Map4757.7RGD
RH 2.0 Map4847.3RGD
Cytogenetic Map4q34UniSTS
D4Rat105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,278,101 - 126,278,340 (+)MAPPERmRatBN7.2
Rnor_6.04125,765,814 - 125,766,052NCBIRnor6.0
Rnor_5.04190,278,357 - 190,278,595UniSTSRnor5.0
RGSC_v3.44128,053,666 - 128,053,905RGDRGSC3.4
RGSC_v3.44128,053,667 - 128,053,905UniSTSRGSC3.4
RGSC_v3.14128,298,477 - 128,298,965RGD
Celera4115,189,805 - 115,190,043UniSTS
SHRSP x BN Map455.49RGD
SHRSP x BN Map455.49UniSTS
Cytogenetic Map4q34UniSTS
D6Mit178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,752,841 - 126,752,943 (+)MAPPERmRatBN7.2
Rnor_6.04126,242,010 - 126,242,111NCBIRnor6.0
Rnor_5.04190,754,793 - 190,754,894UniSTSRnor5.0
RGSC_v3.44128,538,682 - 128,538,783UniSTSRGSC3.4
Celera4115,663,315 - 115,663,416UniSTS
Cytogenetic Map4q34UniSTS
BB468191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,445,402 - 126,445,503 (+)MAPPERmRatBN7.2
Rnor_6.04125,934,228 - 125,934,328NCBIRnor6.0
Rnor_5.04190,447,002 - 190,447,102UniSTSRnor5.0
RGSC_v3.44128,230,550 - 128,230,650UniSTSRGSC3.4
Celera4115,356,501 - 115,356,601UniSTS
Cytogenetic Map4q34UniSTS
RH128955  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04190,527,965 - 190,528,140NCBIRnor5.0
Rnor_5.01056,349,164 - 56,349,340NCBIRnor5.0
RGSC_v3.41056,840,530 - 56,840,705UniSTSRGSC3.4
RGSC_v3.44128,311,608 - 128,311,782UniSTSRGSC3.4
Celera1053,871,176 - 53,871,351UniSTS
Celera4115,437,302 - 115,437,476UniSTS
RH 3.4 Map4757.8UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map4q34UniSTS
RH132066  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,313,294 - 126,313,508 (+)MAPPERmRatBN7.2
Rnor_6.04125,801,128 - 125,801,341NCBIRnor6.0
Rnor_5.04190,313,931 - 190,314,144UniSTSRnor5.0
RGSC_v3.44128,095,368 - 128,095,581UniSTSRGSC3.4
Celera4115,224,960 - 115,225,173UniSTS
RH 3.4 Map4757.6UniSTS
Cytogenetic Map4q34UniSTS
BI278044  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,584,909 - 126,585,082 (+)MAPPERmRatBN7.2
Rnor_6.04126,073,752 - 126,073,924NCBIRnor6.0
Rnor_5.04190,586,535 - 190,586,707UniSTSRnor5.0
RGSC_v3.44128,370,280 - 128,370,452UniSTSRGSC3.4
Celera4115,495,876 - 115,496,048UniSTS
RH 3.4 Map4760.0UniSTS
Cytogenetic Map4q34UniSTS
BF395930  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,327,764 - 126,327,897 (+)MAPPERmRatBN7.2
Rnor_6.04125,815,328 - 125,815,460NCBIRnor6.0
Rnor_5.04190,328,131 - 190,328,263UniSTSRnor5.0
RGSC_v3.44128,111,284 - 128,111,416UniSTSRGSC3.4
Celera4115,239,227 - 115,239,359UniSTS
RH 3.4 Map4757.6UniSTS
Cytogenetic Map4q34UniSTS
BE112829  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,758,147 - 126,758,347 (+)MAPPERmRatBN7.2
Rnor_6.04126,247,123 - 126,247,322NCBIRnor6.0
Rnor_5.04190,759,906 - 190,760,105UniSTSRnor5.0
RGSC_v3.44128,543,987 - 128,544,186UniSTSRGSC3.4
Celera4115,668,356 - 115,668,555UniSTS
RH 3.4 Map4761.3UniSTS
Cytogenetic Map4q34UniSTS
AU048387  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,458,110 - 126,458,377 (+)MAPPERmRatBN7.2
Rnor_6.04125,946,874 - 125,947,140NCBIRnor6.0
Rnor_5.04190,459,731 - 190,459,997UniSTSRnor5.0
RGSC_v3.44128,243,320 - 128,243,586UniSTSRGSC3.4
Celera4115,369,232 - 115,369,498UniSTS
Cytogenetic Map4q34UniSTS
BG380331  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,728,933 - 126,729,164 (+)MAPPERmRatBN7.2
Rnor_6.04126,217,770 - 126,218,000NCBIRnor6.0
Rnor_5.04190,730,553 - 190,730,783UniSTSRnor5.0
RGSC_v3.44128,514,774 - 128,515,004UniSTSRGSC3.4
Celera4115,639,451 - 115,639,681UniSTS
RH 3.4 Map4763.1UniSTS
Cytogenetic Map4q34UniSTS
AW252028  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04190,210,234 - 190,211,492NCBIRnor5.0
RGSC_v3.44127,978,154 - 127,979,411UniSTSRGSC3.4
Celera4115,127,480 - 115,128,737UniSTS
RH 3.4 Map4749.3UniSTS
Cytogenetic Map4q34UniSTS
AU048577  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24126,444,892 - 126,445,000 (+)MAPPERmRatBN7.2
Rnor_6.04125,933,718 - 125,933,825NCBIRnor6.0
Rnor_5.04190,446,492 - 190,446,599UniSTSRnor5.0
RGSC_v3.44128,230,040 - 128,230,147UniSTSRGSC3.4
Celera4115,355,991 - 115,356,098UniSTS
Cytogenetic Map4q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 30 20 12 2 12 74 29 37 11
Low 3 13 37 29 17 29 8 11 6 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001030045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY598951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY598952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000037848   ⟹   ENSRNOP00000033083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4126,207,991 - 126,811,691 (-)Ensembl
Rnor_6.0 Ensembl4125,690,234 - 125,808,281 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000071315   ⟹   ENSRNOP00000065881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4126,211,598 - 126,469,278 (-)Ensembl
Rnor_6.0 Ensembl4125,690,237 - 125,958,112 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083271   ⟹   ENSRNOP00000071015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4126,208,103 - 126,342,711 (-)Ensembl
Rnor_6.0 Ensembl4125,687,307 - 125,929,002 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096892   ⟹   ENSRNOP00000090018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4126,206,816 - 126,811,691 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108766   ⟹   ENSRNOP00000077345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4126,206,816 - 126,811,691 (-)Ensembl
RefSeq Acc Id: NM_001030045   ⟹   NP_001025216
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,768,508 - 128,368,226 (-)NCBI
mRatBN7.24126,211,581 - 126,811,351 (-)NCBI
Rnor_6.04125,690,234 - 126,299,410 (-)NCBI
Rnor_5.04190,203,221 - 190,812,582 (-)NCBI
RGSC_v3.44127,975,386 - 128,597,119 (-)RGD
Celera4115,124,711 - 115,720,952 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401825   ⟹   NP_001388754
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,762,590 - 128,368,226 (-)NCBI
mRatBN7.24126,205,663 - 126,811,351 (-)NCBI
RefSeq Acc Id: XM_006236927   ⟹   XP_006236989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,228 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
Rnor_6.04125,684,816 - 126,300,013 (-)NCBI
Rnor_5.04190,203,221 - 190,812,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236929   ⟹   XP_006236991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
Rnor_6.04125,684,816 - 126,300,013 (-)NCBI
Rnor_5.04190,203,221 - 190,812,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763133   ⟹   XP_008761355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
Rnor_6.04125,684,816 - 126,300,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592832   ⟹   XP_017448321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
Rnor_6.04125,684,816 - 126,300,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108173   ⟹   XP_038964101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108174   ⟹   XP_038964102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108175   ⟹   XP_038964103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,225 (-)NCBI
mRatBN7.24126,205,667 - 126,811,351 (-)NCBI
RefSeq Acc Id: XM_039108176   ⟹   XP_038964104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,225 (-)NCBI
mRatBN7.24126,205,667 - 126,811,351 (-)NCBI
RefSeq Acc Id: XM_039108177   ⟹   XP_038964105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108178   ⟹   XP_038964106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108179   ⟹   XP_038964107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,349 (-)NCBI
RefSeq Acc Id: XM_039108181   ⟹   XP_038964109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108182   ⟹   XP_038964110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
mRatBN7.24126,205,667 - 126,811,353 (-)NCBI
RefSeq Acc Id: XM_039108183   ⟹   XP_038964111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,228 (-)NCBI
mRatBN7.24126,205,667 - 126,811,352 (-)NCBI
RefSeq Acc Id: XM_039108184   ⟹   XP_038964112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
mRatBN7.24126,205,667 - 126,811,352 (-)NCBI
RefSeq Acc Id: XM_039108185   ⟹   XP_038964113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,996,429 (-)NCBI
mRatBN7.24126,205,667 - 126,439,515 (-)NCBI
RefSeq Acc Id: XM_039108188   ⟹   XP_038964116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,997,322 (-)NCBI
mRatBN7.24126,205,667 - 126,440,399 (-)NCBI
RefSeq Acc Id: XM_039108189   ⟹   XP_038964117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,768,038 - 128,368,225 (-)NCBI
mRatBN7.24126,211,115 - 126,811,352 (-)NCBI
RefSeq Acc Id: XM_039108191   ⟹   XP_038964119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,996,962 (-)NCBI
mRatBN7.24126,205,667 - 126,440,042 (-)NCBI
RefSeq Acc Id: XM_039108192   ⟹   XP_038964120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,227 (-)NCBI
mRatBN7.24126,208,735 - 126,811,354 (-)NCBI
RefSeq Acc Id: XM_039108193   ⟹   XP_038964121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
mRatBN7.24126,205,667 - 126,811,350 (-)NCBI
RefSeq Acc Id: XM_039108194   ⟹   XP_038964122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
mRatBN7.24126,208,735 - 126,811,352 (-)NCBI
RefSeq Acc Id: XM_039108195   ⟹   XP_038964123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
mRatBN7.24126,208,735 - 126,811,352 (-)NCBI
RefSeq Acc Id: XM_063286541   ⟹   XP_063142611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,225 (-)NCBI
RefSeq Acc Id: XM_063286542   ⟹   XP_063142612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286543   ⟹   XP_063142613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286544   ⟹   XP_063142614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286545   ⟹   XP_063142615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286546   ⟹   XP_063142616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286547   ⟹   XP_063142617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,224 (-)NCBI
RefSeq Acc Id: XM_063286548   ⟹   XP_063142618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286549   ⟹   XP_063142619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,227 (-)NCBI
RefSeq Acc Id: XM_063286550   ⟹   XP_063142620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286551   ⟹   XP_063142621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,225 (-)NCBI
RefSeq Acc Id: XM_063286552   ⟹   XP_063142622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,255,614 (-)NCBI
RefSeq Acc Id: XM_063286553   ⟹   XP_063142623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,255,614 (-)NCBI
RefSeq Acc Id: XM_063286554   ⟹   XP_063142624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,255,614 (-)NCBI
RefSeq Acc Id: XM_063286555   ⟹   XP_063142625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,996,987 (-)NCBI
RefSeq Acc Id: XM_063286556   ⟹   XP_063142626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,996,790 (-)NCBI
RefSeq Acc Id: XM_063286557   ⟹   XP_063142627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286558   ⟹   XP_063142628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,768,038 - 128,368,227 (-)NCBI
RefSeq Acc Id: XM_063286559   ⟹   XP_063142629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,025,913 (-)NCBI
RefSeq Acc Id: XM_063286560   ⟹   XP_063142630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,025,913 (-)NCBI
RefSeq Acc Id: XM_063286561   ⟹   XP_063142631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,768,038 - 128,368,227 (-)NCBI
RefSeq Acc Id: XM_063286562   ⟹   XP_063142632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286563   ⟹   XP_063142633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286565   ⟹   XP_063142635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,368,226 (-)NCBI
RefSeq Acc Id: XM_063286566   ⟹   XP_063142636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 127,997,008 (-)NCBI
RefSeq Acc Id: XM_063286567   ⟹   XP_063142637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84127,763,439 - 128,025,917 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001025216 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388754 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236989 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236991 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761355 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964101 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964104 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964106 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964107 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964110 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964111 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964112 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964119 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964120 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964121 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964123 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142619 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142623 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142624 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142627 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142628 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142629 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142631 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142633 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142636 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142637 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT99088 (Get FASTA)   NCBI Sequence Viewer  
  AAT99089 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033083
  ENSRNOP00000033083.7
  ENSRNOP00000065881
  ENSRNOP00000065881.3
  ENSRNOP00000071015
  ENSRNOP00000071015.2
  ENSRNOP00000077345
  ENSRNOP00000077345.1
  ENSRNOP00000090018
  ENSRNOP00000090018.1
GenBank Protein Q4L1J4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001025216   ⟸   NM_001030045
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_006236991   ⟸   XM_006236929
- Peptide Label: isoform X9
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236989   ⟸   XM_006236927
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761355   ⟸   XM_008763133
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448321   ⟸   XM_017592832
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000065881   ⟸   ENSRNOT00000071315
RefSeq Acc Id: ENSRNOP00000071015   ⟸   ENSRNOT00000083271
RefSeq Acc Id: ENSRNOP00000033083   ⟸   ENSRNOT00000037848
RefSeq Acc Id: XP_038964110   ⟸   XM_039108182
- Peptide Label: isoform X21
- UniProtKB: A0A8I6ABL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964112   ⟸   XM_039108184
- Peptide Label: isoform X24
- UniProtKB: A0A8I6ABL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964111   ⟸   XM_039108183
- Peptide Label: isoform X22
- UniProtKB: A0A8I6ABL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964104   ⟸   XM_039108176
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964103   ⟸   XM_039108175
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964121   ⟸   XM_039108193
- Peptide Label: isoform X16
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964105   ⟸   XM_039108177
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964106   ⟸   XM_039108178
- Peptide Label: isoform X10
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964109   ⟸   XM_039108181
- Peptide Label: isoform X18
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964102   ⟸   XM_039108174
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964101   ⟸   XM_039108173
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964107   ⟸   XM_039108179
- Peptide Label: isoform X11
- UniProtKB: F1M7H7 (UniProtKB/TrEMBL),   A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964116   ⟸   XM_039108188
- Peptide Label: isoform X28
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964119   ⟸   XM_039108191
- Peptide Label: isoform X28
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964113   ⟸   XM_039108185
- Peptide Label: isoform X28
- UniProtKB: A0A0G2JZE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964120   ⟸   XM_039108192
- Peptide Label: isoform X40
- UniProtKB: A0A8I5Y118 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964123   ⟸   XM_039108195
- Peptide Label: isoform X44
- UniProtKB: A0A8I6ABL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964122   ⟸   XM_039108194
- Peptide Label: isoform X43
- UniProtKB: A0A8I6ABL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964117   ⟸   XM_039108189
- Peptide Label: isoform X35
- UniProtKB: Q4L1J5 (UniProtKB/Swiss-Prot),   Q4L1J4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000090018   ⟸   ENSRNOT00000096892
RefSeq Acc Id: ENSRNOP00000077345   ⟸   ENSRNOT00000108766
RefSeq Acc Id: NP_001388754   ⟸   NM_001401825
- Peptide Label: isoform 1
RefSeq Acc Id: XP_063142619   ⟸   XM_063286549
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063142633   ⟸   XM_063286563
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063142635   ⟸   XM_063286565
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063142627   ⟸   XM_063286557
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063142632   ⟸   XM_063286562
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063142620   ⟸   XM_063286550
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063142618   ⟸   XM_063286548
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063142611   ⟸   XM_063286541
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063142621   ⟸   XM_063286551
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063142613   ⟸   XM_063286543
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063142617   ⟸   XM_063286547
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063142615   ⟸   XM_063286545
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063142614   ⟸   XM_063286544
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063142616   ⟸   XM_063286546
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063142612   ⟸   XM_063286542
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063142624   ⟸   XM_063286554
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063142623   ⟸   XM_063286553
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063142622   ⟸   XM_063286552
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063142637   ⟸   XM_063286567
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063142629   ⟸   XM_063286559
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063142630   ⟸   XM_063286560
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063142636   ⟸   XM_063286566
- Peptide Label: isoform X41
RefSeq Acc Id: XP_063142625   ⟸   XM_063286555
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063142626   ⟸   XM_063286556
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063142631   ⟸   XM_063286561
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063142628   ⟸   XM_063286558
- Peptide Label: isoform X32
Protein Domains
Guanylate kinase-like   PDZ   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4L1J4-F1-model_v2 AlphaFold Q4L1J4 1-1255 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586025 AgrOrtholog
BioCyc Gene G2FUF-43652 BioCyc
Ensembl Genes ENSRNOG00000022060 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037848.7 UniProtKB/TrEMBL
  ENSRNOT00000071315 ENTREZGENE
  ENSRNOT00000071315.4 UniProtKB/TrEMBL
  ENSRNOT00000083271.2 UniProtKB/TrEMBL
  ENSRNOT00000096892.1 UniProtKB/TrEMBL
  ENSRNOT00000108766.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate Kinase phosphate binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:500261 UniProtKB/Swiss-Prot
NCBI Gene 500261 ENTREZGENE
PANTHER MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10316:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGI_u1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGI_u5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00397 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Magi1 PhenoGen
PROSITE GUANYLATE_KINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GUANYLATE_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022060 RatGTEx
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JZE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y118 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABL7 ENTREZGENE, UniProtKB/TrEMBL
  F1M7H7 ENTREZGENE, UniProtKB/TrEMBL
  M0R8T1_RAT UniProtKB/TrEMBL
  MAGI1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q4L1J5 ENTREZGENE
UniProt Secondary Q4L1J5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Magi1  membrane associated guanylate kinase, WW and PDZ domain containing 1  LOC500261  membrane associated guanylate kinase 1 b NT-short isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC500261  membrane associated guanylate kinase 1 b NT-short isoform      Symbol and Name status set to provisional 70820 PROVISIONAL