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Gene: Cert1 (ceramide transporter 1) Rattus norvegicus

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Symbol:

Cert1

Name:

ceramide transporter 1

RGD ID:

1309131

Description:

Predicted to enable several functions, including ceramide transfer activity; identical protein binding activity; and phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in ER to Golgi ceramide transport and intermembrane sphingolipid transfer. Predicted to act upstream of or within several processes, including ceramide metabolic process; in utero embryonic development; and lipid homeostasis. Predicted to be located in several cellular components, including Golgi apparatus; nucleoplasm; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 34. Orthologous to human CERT1 (ceramide transporter 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alpha 3 type IV collagen binding protein; Col4a3bp; collagen type IV alpha 3 binding protein; collagen type IV alpha-3-binding protein; collagen, type IV, alpha 3 (Goodpasture antigen) binding protein; LOC365652; procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CERT1 (ceramide transporter 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cert1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cert1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CERT1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CERT1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cert1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CERT1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CERT1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cert1 (ceramide transporter 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DMTN (dematin actin binding protein)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CERT1 (ceramide transporter 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cert1 (ceramide transporter 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	col4a3bpa (collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	col4a3bpb (collagen, type IV, alpha 3 (Goodpasture antigen) binding protein b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F25H2.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cert	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cert1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,617,202 - 29,721,734 (+)	NCBI		GRCr8
mRatBN7.2	2	27,882,546 - 27,987,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	27,882,555 - 27,987,074 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	34,930,260 - 35,034,747 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	33,030,339 - 33,134,827 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	27,844,444 - 27,949,018 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	27,365,145 - 27,469,797 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,365,148 - 27,469,779 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,477,805 - 46,582,454 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	27,012,330 - 27,117,057 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	26,932,579 - 27,035,278 (+)	NCBI
Celera	2	23,928,949 - 24,033,427 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal dominant intellectual developmental disorder 34 (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

lung non-small cell carcinoma (ISO)

microcephaly (ISO)

Neurodevelopmental Disorders (ISO)

Perinatal Asphyxia (IEP)

Sandhoff disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

bleomycin A2 (ISO)

butanal (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

D-glucose (EXP)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (ISO)

fipronil (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gefitinib (ISO)

gentamycin (EXP)

glucose (EXP)

high-density lipoprotein cholesterol (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

lead(0) (ISO)

methamphetamine (EXP)

methimazole (EXP)

N,N-diethyl-m-toluamide (EXP)

nicotinic acid (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

Salidroside (EXP)

selenium atom (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell morphogenesis (ISO)

cell population proliferation (ISO)

ceramide metabolic process (ISO)

endoplasmic reticulum organization (ISO)

ER to Golgi ceramide transport (IBA,ISO)

heart morphogenesis (ISO)

in utero embryonic development (ISO)

intermembrane sphingolipid transfer (ISO)

lipid homeostasis (ISO)

mitochondrion organization (ISO)

muscle contraction (ISO)

response to endoplasmic reticulum stress (ISO)

signal transduction (ISO)

Cellular Component

cytosol (ISO)

endoplasmic reticulum (IEA)

Golgi apparatus (ISO)

membrane (IEA)

mitochondrion (ISO)

nucleoplasm (IEA,ISO)

perinuclear region of cytoplasm (ISO)

Molecular Function

ceramide binding (ISO)

ceramide transfer activity (ISO)

identical protein binding (ISO)

kinase activity (ISO)

phosphatidylinositol-4-phosphate binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Fetal asphyxia induces acute and persisting changes in the ceramide metabolism in rat brain.	Vlassaks E, etal., J Lipid Res. 2013 Jul;54(7):1825-33. doi: 10.1194/jlr.M034447. Epub 2013 Apr 26.

Additional References at PubMed

PMID:11007769	PMID:14685229	PMID:16895911	PMID:18165232	PMID:18184806	PMID:19139267	PMID:19555756	PMID:24642596	PMID:27996060

Genomics

Comparative Map Data

Cert1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,617,202 - 29,721,734 (+)	NCBI		GRCr8
mRatBN7.2	2	27,882,546 - 27,987,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	27,882,555 - 27,987,074 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	34,930,260 - 35,034,747 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	33,030,339 - 33,134,827 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	27,844,444 - 27,949,018 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	27,365,145 - 27,469,797 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,365,148 - 27,469,779 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,477,805 - 46,582,454 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	27,012,330 - 27,117,057 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	26,932,579 - 27,035,278 (+)	NCBI
Celera	2	23,928,949 - 24,033,427 (+)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

CERT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	75,368,486 - 75,511,981 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	75,356,345 - 75,512,138 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	74,664,311 - 74,807,806 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	74,710,821 - 74,843,196 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	74,710,820 - 74,843,196	NCBI
Celera	5	70,560,104 - 70,701,203 (-)	NCBI		Celera
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	69,872,100 - 70,012,981 (-)	NCBI		HuRef
CHM1_1	5	74,099,650 - 74,240,532 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	75,849,379 - 75,993,050 (-)	NCBI		T2T-CHM13v2.0

Cert1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	96,679,243 - 96,782,362 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	96,679,243 - 96,776,675 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	96,542,709 - 96,640,167 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	96,542,618 - 96,640,167 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	97,312,690 - 97,410,122 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	97,643,445 - 97,738,249 (+)	NCBI		MGSCv36	mm8
Celera	13	100,179,310 - 100,279,400 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	50.58	NCBI

Cert1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	25,233,556 - 25,357,802 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	25,228,216 - 25,355,597 (+)	NCBI	ChiLan1.0	ChiLan1.0

CERT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	39,789,812 - 39,928,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	37,943,448 - 38,082,459 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	39,788,858 - 39,927,626 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	40,400,615 - 40,539,921 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	40,400,900 - 40,539,921 (+)	Ensembl	panpan1.1		panPan2

CERT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	30,860,103 - 30,964,991 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	30,859,569 - 30,962,337 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	32,103,058 - 32,208,205 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	30,790,108 - 30,895,067 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	30,789,601 - 30,894,150 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	30,720,122 - 30,825,163 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	30,690,724 - 30,795,472 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	31,068,667 - 31,173,845 (+)	NCBI		UU_Cfam_GSD_1.0

Cert1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,487,607 - 189,597,296 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936549	1,261,931 - 1,371,380 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936549	1,261,913 - 1,368,743 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CERT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	84,413,340 - 84,537,783 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	84,410,425 - 84,538,018 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	86,049,673 - 86,174,690 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CERT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	69,696,926 - 69,843,000 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	69,708,205 - 69,842,338 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	18,481,646 - 18,628,324 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cert1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624951	721,411 - 828,150 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624951	718,380 - 828,220 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cert1
274 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	412
Count of miRNA genes:	211
Interacting mature miRNAs:	282
Transcripts:	ENSRNOT00000021549
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	11591100	56591100	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22384627	67384627	Rat
631682	Bp115	Blood pressure QTL 115	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	1	37410502	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	41244106	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	9023519	54023519	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27157160	72157160	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	26999571	43154682	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	7887772	42804738	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1643006	Pain1	Pain QTL 1	3.63	0.005	mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	2	26999571	48268661	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	11852062	49003364	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

Markers in Region

D2Rat6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,960,387 - 27,960,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,443,096 - 27,443,254	NCBI	Rnor6.0
Rnor_5.0	2	46,555,753 - 46,555,911	UniSTS	Rnor5.0
RGSC_v3.4	2	27,090,371 - 27,090,529	UniSTS	RGSC3.4
RGSC_v3.4	2	27,090,370 - 27,090,529	RGD	RGSC3.4
RGSC_v3.1	2	27,010,739 - 27,010,898	RGD
Celera	2	24,006,730 - 24,006,888	UniSTS
RH 3.4 Map	2	13.3	UniSTS
RH 3.4 Map	2	13.3	RGD
RH 2.0 Map	2	90.6	RGD
SHRSP x BN Map	2	8.2799	RGD
Cytogenetic Map	2	q12	UniSTS

D2Rat192

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,940,259 - 27,940,466 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,422,969 - 27,423,175	NCBI	Rnor6.0
Rnor_5.0	2	46,535,626 - 46,535,832	UniSTS	Rnor5.0
RGSC_v3.4	2	27,070,241 - 27,070,447	UniSTS	RGSC3.4
RGSC_v3.4	2	27,070,028 - 27,070,465	RGD	RGSC3.4
RGSC_v3.1	2	26,990,610 - 26,990,816	RGD
Celera	2	23,986,609 - 23,986,815	UniSTS
RH 3.4 Map	2	19.8	UniSTS
RH 3.4 Map	2	19.8	RGD
RH 2.0 Map	2	86.4	RGD
SHRSP x BN Map	2	8.2698	RGD
Cytogenetic Map	2	q12	UniSTS

BE097464

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,924,288 - 27,924,443 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,406,883 - 27,407,037	NCBI	Rnor6.0
Rnor_5.0	2	46,519,540 - 46,519,694	UniSTS	Rnor5.0
RGSC_v3.4	2	27,054,062 - 27,054,216	UniSTS	RGSC3.4
Celera	2	23,970,694 - 23,970,848	UniSTS
RH 3.4 Map	2	19.8	UniSTS
Cytogenetic Map	2	q12	UniSTS

RH130511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,986,845 - 27,987,038 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,469,551 - 27,469,743	NCBI	Rnor6.0
Rnor_5.0	2	46,582,208 - 46,582,400	UniSTS	Rnor5.0
RGSC_v3.4	2	27,116,829 - 27,117,021	UniSTS	RGSC3.4
Celera	2	24,033,199 - 24,033,391	UniSTS
Cytogenetic Map	2	q12	UniSTS

RH144594

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	27,961,930 - 27,962,095 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	27,444,639 - 27,444,803	NCBI	Rnor6.0
Rnor_5.0	2	46,557,296 - 46,557,460	UniSTS	Rnor5.0
RGSC_v3.4	2	27,091,914 - 27,092,078	UniSTS	RGSC3.4
Celera	2	24,008,273 - 24,008,437	UniSTS
RH 3.4 Map	2	19.7	UniSTS
Cytogenetic Map	2	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021549 ⟹ ENSRNOP00000021549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	27,882,555 - 27,987,074 (+)	Ensembl
Rnor_6.0 Ensembl	2	27,365,148 - 27,469,779 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110704 ⟹ ENSRNOP00000080901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	27,882,555 - 27,987,074 (+)	Ensembl

RefSeq Acc Id:

NM_001108935 ⟹ NP_001102405

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	29,617,202 - 29,721,718 (+)	NCBI
mRatBN7.2	2	27,882,555 - 27,987,074 (+)	NCBI
Rnor_6.0	2	27,365,148 - 27,469,779 (+)	NCBI
Rnor_5.0	2	46,477,805 - 46,582,454 (+)	NCBI
RGSC_v3.4	2	27,012,330 - 27,117,057 (+)	RGD
Celera	2	23,928,949 - 24,033,427 (+)	RGD

Sequence:

show sequence

GTAAATAGTGGACCCGGCAGGAAGATGGCGGCTGTAGCGGAGGTGTGAGTGGATCTGGGTCTCT
GCTGTTGGCTTGGCTCTTCCCGTCTTCCTCCCCCTCCTCCCTCCCTGACTGAGGTTGGCATCTA
GGGGGCCGAGTTCAGGTGGCGGCGCCGGGCGCAGCGCAGGGGTCACGGCCACGGCGGCTGACGG
CTGGAAGGGCAGGCTTTCTTCGCCGCTCGTCCTCCTTCCCTGGTCCGCTCGGTGTCAGGCGCGG
CGGCGGCGGCGCAGCGGGCGCGCTTCGTCCCTCTTCCTGTTCCCTCACTCCCCGGAGCGGGCAC
TCTTGGCTGTGCCATCCCCCGACCCTTCACCCCAGGGACTAGGCGCCTGCACTGGCGCAGCTCG
CGGAGCGGGGGCCGGTCTCCTGCTCGGCTGTCGCGTCTCCATGTCGGATAACCAGAGCTGGAAC
TCGTCGGGCTCGGAGGAGGATCCGGAGACAGAGTCCGGGCCGCCTGTGGAGCGCTGCGGAGTCC
TCAGCAAGTGGACAAACTATATTCATGGGTGGCAGGATCGTTGGGTTGTTTTGAAAAATAATAC
TTTGAGTTACTACAAATCTGAAGATGAAACAGAATATGGCTGTAGGGGATCCATCTGTCTAAGC
AAGGCTGTGATCACGCCTCATGACTTTGATGAATGCCGGTTTGATATTAGTGTGAATGATAGTG
TTTGGTATCTTCGTGCTCAGGACCCAGATCATAGACAGCAGTGGGTAGACGCCATTGAGCAGCA
CAAGACTGAATCAGGATATGGATCTGAGTCCAGCTTGCGTAGACATGGCTCAATGGTGTCACTG
GTGTCTGGAGCAAGTGGCTATTCTGCTACGTCCACATCTTCATTCAAGAAAGGCCACAGTTTAC
GTGAGAAGTTGGCTGAAATGGAAACCTTTAGAGACATCCTGTGTAGGCAGGTTGATACTCTGCA
GAAGTACTTTGATGTCTGTGCTGATGCTGTCTCCAAGGATGAACTTCAAAGGGATAAAGTGGTA
GAAGACGATGAAGATGACTTCCCTACAACTCGCTCTGATGGAGACTTCTTGCACAATACCAATG
GTAATAAGGAAAAATTATTTCCACATGTAACACCAAAAGGAATTAATGGCATAGACTTTAAGGG
GGAAGCAATAACTTTTAAAGCAACTACTGCTGGCATCCTTGCTACACTGTCTCATTGTATTGAA
CTGATGGTAAAACGCGAAGAAAGCTGGCAAAAAAGGCATGATAGGGAAGTGGAAAAGCGGAGAC
GAGTAGAGGAAGCATACAAGAATGTGACGGAGGAACTTAAGAAGAAACCTCGCTTCGGAGGGCC
AGACTATGAAGAAGGTCCAAACAGTCTGATTAATGAGGAAGAGTTCTTTGATGCTGTTGAAGCT
GCTCTTGACAGACAAGATAAAATAGAGGAACAGTCACAGAGTGAAAAGGTCAGGTTACACTGGC
CTCCGTCATTGCCATCTGGAGATACCTTTTCTTCAGTTGGGACTCACAGATTCGTACAAAAGCC
CTATAGTCGCTCTCCCTCCATGTCTTCCATTGATCTAGTCAGTGCCTCTGACGATGTCCACAGA
TTCAGCTCCCAGGTTGAAGAGATGGTACAGAACCACATGAATTATTCATTACAGGATGTAGGTG
GTGATGCAAATTGGCAGCTGGTTGTAGAAGAAGGAGAAATGAAGGTGTACAGAAGAGAAGTTGA
AGAAAATGGAATCGTTCTGGATCCTTTGAAAGCTACTCATGCAGTTAAAGGTGTTACAGGACAC
GAGGTCTGCAATTACTTTTGGAATGTTGATGTTCGCAATGACTGGGAAACTACTATAGAAAACT
TTCATGTGGTGGAAACATTAGCTGATAATGCAATCATCATTTATCAAACGCACAAGAGAGTGTG
GCCCGCTTCTCAGAGAGACGTGCTGTATCTTTCTGCTATTCGGAAGATCCCAGCCTTGACTGAG
AACGACCCTGAGACTTGGATAGTTTGTAATTTCTCTGTGGACCATGACAGTGCTCCTCTGAACA
ATCGATGTGTCCGTGCCAAAATCAATATTGCTTTGATTTGTCAAACTTTGGTAAGCCCACCAGA
GGGAGACCAGGAGATAAGCAGAGACAACATTCTGTGCAAGATTACATATGTAGCTAATGTGAAC
CCAGGAGGATGGGCGCCAGCCTCGGTGTTAAGAGCAGTGGCAAAGCGAGAATACCCTAAGTTTC
TAAAACGATTTACTTCTTATGTCCAAGAAAAAACTGCAGGAAAACCAATTTTGTTTTAGTGTTA
ACAGTGACTGAAGCAAGGCTGTGTGACATTCCATGTTGGAGAAAGAAGGAAAGAAAAATCCTCT
AAACTGGAACGCAGGATCTACAGCCTTGTCTGGCCCGGAAGAAACGTTGCAATAGTAAAGCTGG
GTACCCAACTAGCCATCTCCTGCTAGATCTCCTCGCTCGGCGTGTAACTATAAATACATGAGAC
TCACATGTATATGGCTATATTTTTATTTGCTTGCTCCTAGGAGTGAAAAAAATTAACTTTGAAT
TACAACTAGGAATTAACCGATGCTTTAATTTTGAGGAACTTTTTCAGAATTTTTTATTTACCGT
GGTCCAGCCTAAGACCCTCAGCTGCATCAGGTTTTGTGCATAAAAGAAAAGCACAAAAGTTGAC
CGCACCTGAGATGTGTGCTCTCTGTGCACCAAATATTCAGATGGGCTTCTTTTTACAGGCCTAT
GTCTGTGTGTCTGTCTGGAAGTTTTTGACTTTTTTGCTTTGTATAATCATAGAGTCTATTGCTG
CTGGTTTCTACATGGACTCATGTCGTGTGTCTCTTCATAACTGAGGACTGTCAATAACCTGTGA
TTTTGCCTTTTCTATAGTCTTACTCCCATGAAGAACGTTGGTTCTGATGGAGGAAGAATGAAAA
GCTTTATCCCCCAGATATCTTTATATTTTTATTATGTATTTTAGTTGTGTACTATGTGCTACCA
ACTTTTTTCAGTTTGTTACAAACACAATTTGGTAATTTTTAAATTGGTTCTGCCTGCCTCCAGT
CAGACAACTGTACATCTCTTATGGTATAGAGTACTTTATATACAGAGGTCAGGATAAAGTGGGT
TCATATTTTCCCTGAAATTTGTAAGAGAATATATGGTATTACTTGTTAAACCAAATCAGACTGT
TTGAATTTGACATTTGATTTAATATTTCTAGTATTCTGTAACAAATATGGGAGTTTTTCTAGCT
TGGATCACTTTAAATGATCTATCGAAGGTATGTATAGAAATCTGAACAATGCTCAATTTTCCTC
TTGATCATAAATTTCAGCAGAGCAGTGAAATTCCACACTATTCAAACTGAAATGCTGTCTTTAG
TTGCTATGAGAAGCTAAGGTAAAATACCTGATTTAGTTGTAGTCCTCTATGAAAAACTTTGCAG
CATGGAGTTGAGGCAAGGAATGTACTCACTTCAGCTGGGATGACTGCCCACTTCAAACTCTTGA
TTGTGTTTACAAGCAGATGTATTTATGTAAATCAGGCATTTTGTAAATGCTTTGCTGACTTGTT
CCTCTCCTTAGAAACACAAAAATCAGACCCTTTTGTAAAGCAGAGAGTCATGTCATGTAAAACA
TGACCTGTATATATTCCATCCATCGAAATGGAGTCTAAAGATGAATGCAAGGTGTGCTAATTTA
ATGATGGGATTAGTCTGAACACTTAGGATGCACAATCCTGGAAGTGAAGCACTTGCATCAGATA
GAATGATATTTATTACTCTGTACAGAGAGGAAAGTACATATAAATCATAGAGCTTACATTACAT
GCACGCAGTTTCACGTCCCATAAATCCTTTATATTTTTAATTTACCTTCTCTAAATGATGTGCA
TGGAATCTGCCTTATTACAGAAATGCTATTCATAATTTGACTCTGTGGAAAAGTGCCTATACGG
TGGTAAAGCTAGGAAGGCAAGGAGGACTATCGCACCAGTTTACATCACCAGTTAGCATTTTATA
GTATGACGTTTAAAAAGAAAAGTTTATACCTCAAATGTGTGTTTTATTTTGCAATCAGCTGTGG
GGTTGGGATGGGAGAACGGGAGGGTTGGGAGGGAAAGTTTATTTGCCATAGGCACTGGTGGGAA
TCTTAGGGAAAAAAACAAAACAAAAACAAACAGCCAAAAAAAAAACCCAAAAAAGCAAAACAAA
ACTCTCTACACCCACTATAAATGTTCCTCTGTTTGCATTTGTGGTAACTCTGTTGAACCAGGCA
AATAACTCTTTCAAAACTAAATTGAATAGCTTTATTTTACAAACAGGCGCAAAGTTTATGAGGC
AGGGTCTGCATCTAATTATCACCAGTTGCATTTGCACCAAATGGGGTGATAATCTTTTACAATT
TATTCTGTAAATAAAATGTTACACTAAAAATGTTTGTGGTAAAAAAAAGATAAGGAATGACCAT
TTTACCGCTAAGTAATTGACTGGTACTTTATTGGAGCTGTCCCTGTCTAGTCAGATTTAGAACT
GAGTTCAGAAATACTGACAGCAGCCAGAGTCAGAGTCAGGAGGAGCACTGGCCGCGTTAGAATA
TTCAGACCCTCAAGGGTTCCTTCCATTAGGCTGAGTCCTACATACTGAAGATTTATTATATTTC
TTCTCACCTGGGTATTTATCTTGGCCCAAGTCCCCATCCCACAACCCCCCAAAACAAGCCCCTT
TACTCAATTCTGCTGGATTATTTCATGATGTTAGACACCTGAAAAATACTGGTGCTGCGGGGAT
TTGTCCCTGCGTGTGAGTGAATGCCATGGGAGAGCACAGTGCTCCTCTAGAGATTGAGGACTCC
GTATTTGAGGTGGAGAAACTTGATTTGGTGTTGCTATAGGAGGAGCAGCAAAGGCAGGAGGGAG
GTGTGTGGAGGCAAAGAAAGATAAAGGAGCCACGGTTCTCATCTGTTGGTTTTCATGACTACTT
TATTAAAACACCTATACAATAGCAGTGTCGGTGGCTACAGAATGTGAGCTGAGCTGAGCTGGTT
CGCTGGTGAGACTGCTGGTTACCTTGAAGCTTACGGTCGTTTGTCGGCTCAGACGCTGGGCCAG
TACTTAGTCCAGGCTGTACAGACAGTGTATTGGATCGTTGTCCTTGGTCATCTACAGACTCAAA
ACATAATCATTTTCAAATACCTTGGGAGTGTGTAGAGTGTAACTATAATAGCTTTATGATTCTG
ATGATGTTTTTTAAAAATATAAAAGATGGATCTTCCATGTTACAATCACAAAATTAAAACCAGT
ATTTAAAAGTGGAGAAGTATTAAA

hide sequence

RefSeq Acc Id:

XM_006231827 ⟹ XP_006231889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	29,617,587 - 29,721,734 (+)	NCBI
mRatBN7.2	2	27,882,546 - 27,987,090 (+)	NCBI
Rnor_6.0	2	27,365,145 - 27,469,797 (+)	NCBI
Rnor_5.0	2	46,477,805 - 46,582,454 (+)	NCBI

Sequence:

show sequence

AGGGTAAATAGTGGACCCGGCAGGAAGATGGCGGCTGTAGCGGAGGTGTGAGTGGATCTGGGTC
TCTGCTGTTGGCTTGGCTCTTCCCGTCTTCCTCCCCCTCCTCCCTCCCTGACTGAGGTTGGCAT
CTAGGGGGCCGAGTTCAGGTGGCGGCGCCGGGCGCAGCGCAGGGGTCACGGCCACGGCGGCTGA
CGGCTGGAAGGGCAGGCTTTCTTCGCCGCTCGTCCTCCTTCCCTGGTCCGCTCGGTGTCAGGCG
CGGCGGCGGCGGCGCAGCGGGCGCGCTTCGTCCCTCTTCCTGTTCCCTCACTCCCCGGAGCGGG
CACTCTTGGCTGTGCCATCCCCCGACCCTTCACCCCAGGGACTAGGCGCCTGCACTGGCGCAGC
TCGCGGAGCGGGGGCCGGTCTCCTGCTCGGCTGTCGCGTCTCCATGTCGGATAACCAGAGCTGG
AACTCGTCGGGCTCGGAGGAGGATCCGGAGACAGAGTCCGGGCCGCCTGTGGAGCGCTGCGGAG
TCCTCAGCAAGTGGACAAACTATATTCATGGGTGGCAGGATCGTTGGGTTGTTTTGAAAAATAA
TACTTTGAGTTACTACAAATCTGAAGATGAAACAGAATATGGCTGTAGGGGATCCATCTGTCTA
AGCAAGGCTGTGATCACGCCTCATGACTTTGATGAATGCCGGTTTGATATTAGTGTGAATGATA
GTGTTTGGTATCTTCGTGCTCAGGACCCAGATCATAGACAGCAGTGGGTAGACGCCATTGAGCA
GCACAAGACTGAATCAGGATATGGATCTGAGTCCAGCTTGCGTAGACATGGCTCAATGGTGTCA
CTGGTGTCTGGAGCAAGTGGCTATTCTGCTACGTCCACATCTTCATTCAAGAAAGGCCACAGTT
TACGTGAGAAGTTGGCTGAAATGGAAACCTTTAGAGACATCCTGTGTAGGCAGGTTGATACTCT
GCAGAAGTACTTTGATGTCTGTGCTGATGCTGTCTCCAAGGATGAACTTCAAAGGGATAAAGTG
GTAGAAGACGATGAAGATGACTTCCCTACAACTCGCTCTGATGGAGACTTCTTGCACAATACCA
ATGGTAATAAGGAAAAATTATTTCCACATGTAACACCAAAAGGAATTAATGGCATAGACTTTAA
GGGGGAAGCAATAACTTTTAAAGCAACTACTGCTGGCATCCTTGCTACACTGTCTCATTGTATT
GAACTGATGGTAAAACGCGAAGAAAGCTGGCAAAAAAGGCATGATAGGGAAGTGGAAAAGCGGA
GACGAGTAGAGGAAGCATACAAGAATGTGACGGAGGAACTTAAGAAGAAACCTCGCTTCGGAGG
GCCAGACTATGAAGAAGGTCCAAACAGTCTGATTAATGAGGAAGAGTTCTTTGATGCTGTTGAA
GCTGCTCTTGACAGACAAGATAAAATAGAGGAACAGTCACAGAGTGAAAAGGTCAGGTTACACT
GGCCTCCGTCATTGCCATCTGGAGATACCTTTTCTTCAGTTGGGACTCACAGATTCGTACAAAA
GGTTGAAGAGATGGTACAGAACCACATGAATTATTCATTACAGGATGTAGGTGGTGATGCAAAT
TGGCAGCTGGTTGTAGAAGAAGGAGAAATGAAGGTGTACAGAAGAGAAGTTGAAGAAAATGGAA
TCGTTCTGGATCCTTTGAAAGCTACTCATGCAGTTAAAGGTGTTACAGGACACGAGGTCTGCAA
TTACTTTTGGAATGTTGATGTTCGCAATGACTGGGAAACTACTATAGAAAACTTTCATGTGGTG
GAAACATTAGCTGATAATGCAATCATCATTTATCAAACGCACAAGAGAGTGTGGCCCGCTTCTC
AGAGAGACGTGCTGTATCTTTCTGCTATTCGGAAGATCCCAGCCTTGACTGAGAACGACCCTGA
GACTTGGATAGTTTGTAATTTCTCTGTGGACCATGACAGTGCTCCTCTGAACAATCGATGTGTC
CGTGCCAAAATCAATATTGCTTTGATTTGTCAAACTTTGGTAAGCCCACCAGAGGGAGACCAGG
AGATAAGCAGAGACAACATTCTGTGCAAGATTACATATGTAGCTAATGTGAACCCAGGAGGATG
GGCGCCAGCCTCGGTGTTAAGAGCAGTGGCAAAGCGAGAATACCCTAAGTTTCTAAAACGATTT
ACTTCTTATGTCCAAGAAAAAACTGCAGGAAAACCAATTTTGTTTTAGTGTTAACAGTGACTGA
AGCAAGGCTGTGTGACATTCCATGTTGGAGAAAGAAGGAAAGAAAAATCCTCTAAACTGGAACG
CAGGATCTACAGCCTTGTCTGGCCCGGAAGAAACGTTGCAATAGTAAAGCTGGGTACCCAACTA
GCCATCTCCTGCTAGATCTCCTCGCTCGGCGTGTAACTATAAATACATGAGACTCACATGTATA
TGGCTATATTTTTATTTGCTTGCTCCTAGGAGTGAAAAAAATTAACTTTGAATTACAACTAGGA
ATTAACCGATGCTTTAATTTTGAGGAACTTTTTCAGAATTTTTTATTTACCGTGGTCCAGCCTA
AGACCCTCAGCTGCATCAGGTTTTGTGCATAAAAGAAAAGCACAAAAGTTGACCGCACCTGAGA
TGTGTGCTCTCTGTGCACCAAATATTCAGATGGGCTTCTTTTTACAGGCCTATGTCTGTGTGTC
TGTCTGGAAGTTTTTGACTTTTTTGCTTTGTATAATCATAGAGTCTATTGCTGCTGGTTTCTAC
ATGGACTCATGTCGTGTGTCTCTTCATAACTGAGGACTGTCAATAACCTGTGATTTTGCCTTTT
CTATAGTCTTACTCCCATGAAGAACGTTGGTTCTGATGGAGGAAGAATGAAAAGCTTTATCCCC
CAGATATCTTTATATTTTTATTATGTATTTTAGTTGTGTACTATGTGCTACCAACTTTTTTCAG
TTTGTTACAAACACAATTTGGTAATTTTTAAATTGGTTCTGCCTGCCTCCAGTCAGACAACTGT
ACATCTCTTATGGTATAGAGTACTTTATATACAGAGGTCAGGATAAAGTGGGTTCATATTTTCC
CTGAAATTTGTAAGAGAATATATGGTATTACTTGTTAAACCAAATCAGACTGTTTGAATTTGAC
ATTTGATTTAATATTTCTAGTATTCTGTAACAAATATGGGAGTTTTTCTAGCTTGGATCACTTT
AAATGATCTATCGAAGGTATGTATAGAAATCTGAACAATGCTCAATTTTCCTCTTGATCATAAA
TTTCAGCAGAGCAGTGAAATTCCACACTATTCAAACTGAAATGCTGTCTTTAGTTGCTATGAGA
AGCTAAGGTAAAATACCTGATTTAGTTGTAGTCCTCTATGAAAAACTTTGCAGCATGGAGTTGA
GGCAAGGAATGTACTCACTTCAGCTGGGATGACTGCCCACTTCAAACTCTTGATTGTGTTTACA
AGCAGATGTATTTATGTAAATCAGGCATTTTGTAAATGCTTTGCTGACTTGTTCCTCTCCTTAG
AAACACAAAAATCAGACCCTTTTGTAAAGCAGAGAGTCATGTCATGTAAAACATGACCTGTATA
TATTCCATCCATCGAAATGGAGTCTAAAGATGAATGCAAGGTGTGCTAATTTAATGATGGGATT
AGTCTGAACACTTAGGATGCACAATCCTGGAAGTGAAGCACTTGCATCAGATAGAATGATATTT
ATTACTCTGTACAGAGAGGAAAGTACATATAAATCATAGAGCTTACATTACATGCACGCAGTTT
CACGTCCCATAAATCCTTTATATTTTTAATTTACCTTCTCTAAATGATGTGCATGGAATCTGCC
TTATTACAGAAATGCTATTCATAATTTGACTCTGTGGAAAAGTGCCTATACGGTGGTAAAGCTA
GGAAGGCAAGGAGGACTATCGCACCAGTTTACATCACCAGTTAGCATTTTATAGTATGACGTTT
AAAAAGAAAAGTTTATACCTCAAATGTGTGTTTTATTTTGCAATCAGCTGTGGGGTTGGGATGG
GAGAACGGGAGGGTTGGGAGGGAAAGTTTATTTGCCATAGGCACTGGTGGGAATCTTAGGGAAA
AAAACAAAACAAAAACAAACAGCCAAAAAAAAAACCCAAAAAAGCAAAACAAAACTCTCTACAC
CCACTATAAATGTTCCTCTGTTTGCATTTGTGGTAACTCTGTTGAACCAGGCAAATAACTCTTT
CAAAACTAAATTGAATAGCTTTATTTTACAAACAGGCGCAAAGTTTATGAGGCAGGGTCTGCAT
CTAATTATCACCAGTTGCATTTGCACCAAATGGGGTGATAATCTTTTACAATTTATTCTGTAAA
TAAAATGTTACACTAAAAATGTTTGTGGTAAAAAAAAGATAAGGAATGACCATTTTACCGCTAA
GTAATTGACTGGTACTTTATTGGAGCTGTCCCTGTCTAGTCAGATTTAGAACTGAGTTCAGAAA
TACTGACAGCAGCCAGAGTCAGAGTCAGGAGGAGCACTGGCCGCGTTAGAATATTCAGACCCTC
AAGGGTTCCTTCCATTAGGCTGAGTCCTACATACTGAAGATTTATTATATTTCTTCTCACCTGG
GTATTTATCTTGGCCCAAGTCCCCATCCCACAACCCCCCAAAACAAGCCCCTTTACTCAATTCT
GCTGGATTATTTCATGATGTTAGACACCTGAAAAATACTGGTGCTGCGGGGATTTGTCCCTGCG
TGTGAGTGAATGCCATGGGAGAGCACAGTGCTCCTCTAGAGATTGAGGACTCCGTATTTGAGGT
GGAGAAACTTGATTTGGTGTTGCTATAGGAGGAGCAGCAAAGGCAGGAGGGAGGTGTGTGGAGG
CAAAGAAAGATAAAGGAGCCACGGTTCTCATCTGTTGGTTTTCATGACTACTTTATTAAAACAC
CTATACAATAGCAGTGTCGGTGGCTACAGAATGTGAGCTGAGCTGAGCTGGTTCGCTGGTGAGA
CTGCTGGTTACCTTGAAGCTTACGGTCGTTTGTCGGCTCAGACGCTGGGCCAGTACTTAGTCCA
GGCTGTACAGACAGTGTATTGGATCGTTGTCCTTGGTCATCTACAGACTCAAAACATAATCATT
TTCAAATACCTTGGGAGTGTGTAGAGTGTAACTATAATAGCTTTATGATTCTGATGATGTTTTT
TAAAAATATAAAAGATGGATCTTCCATGTTACAATCACAAAATTAAAACCAGTATTTAAAAGTG
GAGAAGTATTAAAATATTATGGACAAATATG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102405	(Get FASTA)	NCBI Sequence Viewer
	XP_006231889	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10117	(Get FASTA)	NCBI Sequence Viewer
	EDM10118	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021549.5
	ENSRNOP00000080901.1

RefSeq Acc Id:

NP_001102405 ⟸ NM_001108935

- UniProtKB:

D4ACN6 (UniProtKB/TrEMBL), A6I509 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEYG
CRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWVDAIEQHKTESGYGSESSLR
RHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDVCADAVSKD
ELQRDKVVEDDEDDFPTTRSDGDFLHNTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGIL
ATLSHCIELMVKREESWQKRHDREVEKRRRVEEAYKNVTEELKKKPRFGGPDYEEGPNSLINEE
EFFDAVEAALDRQDKIEEQSQSEKVRLHWPPSLPSGDTFSSVGTHRFVQKPYSRSPSMSSIDLV
SASDDVHRFSSQVEEMVQNHMNYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATH
AVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSAI
RKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINIALICQTLVSPPEGDQEISRDNILCK
ITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF

hide sequence

RefSeq Acc Id:	XP_006231889 ⟸ XM_006231827
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZRB1 (UniProtKB/TrEMBL), A6I510 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDNQSWNSSGSEEDPETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEYG CRGSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWVDAIEQHKTESGYGSESSLR RHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDVCADAVSKD ELQRDKVVEDDEDDFPTTRSDGDFLHNTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGIL ATLSHCIELMVKREESWQKRHDREVEKRRRVEEAYKNVTEELKKKPRFGGPDYEEGPNSLINEE EFFDAVEAALDRQDKIEEQSQSEKVRLHWPPSLPSGDTFSSVGTHRFVQKVEEMVQNHMNYSLQ DVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT IENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSAIRKIPALTENDPETWIVCNFSVDHDSA PLNNRCVRAKINIALICQTLVSPPEGDQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREY PKFLKRFTSYVQEKTAGKPILF hide sequence

Ensembl Acc Id:

ENSRNOP00000021549 ⟸ ENSRNOT00000021549

Ensembl Acc Id:

ENSRNOP00000080901 ⟸ ENSRNOT00000110704

Protein Domains

PH START

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACN6-F1-model_v2	AlphaFold	D4ACN6	1-624	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691083

Promoter ID:

EPDNEW_R1608

Type:

multiple initiation site

Name:

Col4a3bp_1

Description:

collagen type IV alpha 3 binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	27,365,158 - 27,365,218	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309131	AgrOrtholog
BioCyc Gene	G2FUF-54778	BioCyc
Ensembl Genes	ENSRNOG00000015686	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021549.6	UniProtKB/TrEMBL
	ENSRNOT00000110704.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	3.30.530.20	UniProtKB/TrEMBL
InterPro	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	STARD11_START	UniProtKB/TrEMBL
	START-like_dom	UniProtKB/TrEMBL
	START_lipid-bd	UniProtKB/TrEMBL
	START_lipid_transfer	UniProtKB/TrEMBL
KEGG Report	rno:365652	UniProtKB/TrEMBL
NCBI Gene	365652	ENTREZGENE
PANTHER	CERAMIDE TRANSFER PROTEIN	UniProtKB/TrEMBL
	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
PhenoGen	Cert1	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015686	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
	START	UniProtKB/TrEMBL
Superfamily-SCOP	Bet v1-like	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
UniProt	A0A8I5ZRB1	ENTREZGENE, UniProtKB/TrEMBL
	A6I509	ENTREZGENE, UniProtKB/TrEMBL
	A6I510	ENTREZGENE, UniProtKB/TrEMBL
	D4ACN6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-07-02	Cert1	ceramide transporter 1	Col4a3bp	collagen type IV alpha 3 binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-27	Col4a3bp	collagen type IV alpha 3 binding protein	Col4a3bp	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Col4a3bp	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	Col4a3bp_predicted	procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Col4a3bp_predicted	procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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