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Gene: Ammecr1l (AMMECR1 like) Rattus norvegicus

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Symbol:

Ammecr1l

Name:

AMMECR1 like

RGD ID:

1307915

Description:

Predicted to be active in nucleus. Orthologous to human AMMECR1L (AMMECR1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

AMME chromosomal region gene 1-like; AMMECR1-like protein; LOC307526; MGC188040; RGD1307915; similar to hypothetical protein MGC32132

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AMMECR1L (AMMECR1 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ammecr1l (AMME chromosomal region gene 1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ammecr1l (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AMMECR1L (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AMMECR1L (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ammecr1l (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AMMECR1L (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AMMECR1L (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ammecr1l (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ammecr1l (AMMECR1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RNASE12 (ribonuclease A family member 12 (inactive))	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ammecr1l (AMME chromosomal region gene 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ammecr1l (AMME chromosomal region gene 1-like)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AMMECR1L (AMMECR1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AMMECR1L (AMMECR1 like)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5902	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5902	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R166.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R166.3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YOR289W	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YOR289W	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,661,649 - 23,685,391 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,661,341 - 23,685,649 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,386,114 - 23,411,177 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,386,903 - 23,410,920 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,516,338 - 23,539,255 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,265,365 - 24,288,279 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,611,305 - 23,634,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,539,530 - 24,563,576 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,540,659 - 24,563,576 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,175,222 - 24,198,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,140,658 - 23,163,573 (+)	NCBI		Celera
RGSC_v3.1	18	24,201,417 - 24,223,692 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

acetazolamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP)

cadmium sulfate (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

finasteride (EXP)

folic acid (ISO)

FR900359 (ISO)

gallic acid (ISO)

gentamycin (EXP)

Heptachlor epoxide (ISO)

hydrogen peroxide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

melphalan (ISO)

nefazodone (EXP)

ozone (ISO)

paracetamol (ISO)

phenobarbital (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (EXP)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Ammecr1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,661,649 - 23,685,391 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,661,341 - 23,685,649 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,386,114 - 23,411,177 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,386,903 - 23,410,920 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,516,338 - 23,539,255 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,265,365 - 24,288,279 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,611,305 - 23,634,222 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,539,530 - 24,563,576 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,540,659 - 24,563,576 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,175,222 - 24,198,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,140,658 - 23,163,573 (+)	NCBI		Celera
RGSC_v3.1	18	24,201,417 - 24,223,692 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

AMMECR1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	127,861,630 - 127,885,956 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	127,861,630 - 127,885,967 (-)	Ensembl			hg38	GRCh38
GRCh37	2	128,619,204 - 128,643,530 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	128,335,674 - 128,358,904 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	121,930,156 - 121,953,388 (-)	NCBI		Celera
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,925,501 - 120,949,646 (-)	NCBI		HuRef
CHM1_1	2	128,624,214 - 128,648,542 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	128,296,887 - 128,321,215 (-)	NCBI		T2T-CHM13v2.0

Ammecr1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	31,891,457 - 31,917,136 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	31,892,879 - 31,915,796 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	31,758,504 - 31,784,083 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	31,759,826 - 31,782,743 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	31,919,534 - 31,942,397 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	31,902,890 - 31,925,753 (+)	NCBI		MGSCv36	mm8
Celera	18	32,247,440 - 32,270,246 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	17.84	NCBI

Ammecr1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	2,654,361 - 2,678,080 (+)	Ensembl
ChiLan1.0	NW_004955459	2,654,361 - 2,678,080 (+)	NCBI	ChiLan1.0	ChiLan1.0

AMMECR1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	47,759,074 - 47,783,757 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	47,774,318 - 47,812,676 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,391,258 - 32,415,660 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,526,664 - 128,549,436 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,526,669 - 128,549,436 (-)	Ensembl			panPan2	panpan1.1

AMMECR1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	22,715,611 - 22,747,933 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	22,726,419 - 22,744,432 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	22,962,782 - 22,995,123 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	24,041,709 - 24,074,486 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	24,051,437 - 24,074,484 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	22,696,659 - 22,729,413 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	22,940,809 - 22,973,124 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	24,071,887 - 24,104,696 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ammecr1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	98,146,540 - 98,170,991 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,445,725 - 43,471,226 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,445,707 - 43,471,170 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AMMECR1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,453,722 - 59,476,517 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	59,453,070 - 59,476,526 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	66,209,522 - 66,238,678 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AMMECR1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,330,828 - 2,358,239 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	2,335,031 - 2,358,391 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	20,404,483 - 20,429,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ammecr1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	14,313,808 - 14,339,847 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	14,314,257 - 14,339,942 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ammecr1l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	12,459,567 - 12,483,555 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ammecr1l
152 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	817
Count of miRNA genes:	320
Interacting mature miRNAs:	434
Transcripts:	ENSRNOT00000061074
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	15642280	31610627	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	31610627	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

BF390827

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,389,639 - 23,389,797 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,542,297 - 24,542,454	NCBI	Rnor6.0
Rnor_5.0	18	24,259,495 - 24,259,652	UniSTS	Rnor5.0
RGSC_v3.4	18	24,176,860 - 24,177,017	UniSTS	RGSC3.4
Celera	18	23,142,296 - 23,142,453	UniSTS
RH 3.4 Map	18	280.7	UniSTS
Cytogenetic Map	18	p12	UniSTS

AI230801

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,404,978 - 23,405,168 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,557,636 - 24,557,825	NCBI	Rnor6.0
Rnor_5.0	18	24,274,834 - 24,275,023	UniSTS	Rnor5.0
RGSC_v3.4	18	24,192,199 - 24,192,388	UniSTS	RGSC3.4
Celera	18	23,157,634 - 23,157,823	UniSTS
RH 3.4 Map	18	301.3	UniSTS
Cytogenetic Map	18	p12	UniSTS

AI406932

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	23,684,709 - 23,684,910 (+)	Marker Load Pipeline
mRatBN7.2	18	23,410,237 - 23,410,439 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,562,895 - 24,563,095	NCBI	Rnor6.0
Rnor_5.0	18	24,280,093 - 24,280,293	UniSTS	Rnor5.0
RGSC_v3.4	18	24,197,458 - 24,197,658	UniSTS	RGSC3.4
Celera	18	23,162,893 - 23,163,093	UniSTS
RH 3.4 Map	18	280.6	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_361285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC090015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061074 ⟹ ENSRNOP00000057790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,662,474 - 23,685,391 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,387,349 - 23,410,920 (+)	Ensembl
Rnor_6.0 Ensembl	18	24,540,659 - 24,563,576 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094521 ⟹ ENSRNOP00000095073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,661,362 - 23,684,277 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,386,903 - 23,408,968 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150322 ⟹ ENSRNOP00000099320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,661,341 - 23,685,649 (+)	Ensembl

RefSeq Acc Id:

NM_001107399 ⟹ NP_001100869

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,662,474 - 23,685,391 (+)	NCBI
mRatBN7.2	18	23,388,002 - 23,410,920 (+)	NCBI
Rnor_6.0	18	24,540,659 - 24,563,576 (+)	NCBI
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI
RGSC_v3.4	18	24,175,222 - 24,198,139 (+)	RGD
Celera	18	23,140,658 - 23,163,573 (+)	RGD

Sequence:

show sequence

AGATTGCGAAGAAGAGATTCGTGCAAAGCTGAGTAAGGATGAATGGCTCCACCAACACTTACCA
TCGTCTCCTGGCACAAGGTGCCTTGTCCTCAGGGGCCTAGCATGTTGTCCGGTATTGGAAGAAG
GGATGGAATTGGAAGAAAGAAGATTCATTCCAGAGACAAAATAGCTCCCCTCTCCTATTGTAGC
TGTTTCCTCTGGGACTATAAACTTTCTGCTTTCAGGTTCTGCAGCATCCCAGATCACAAACACC
AGATCAGGATGGGAAAAAGACGTTGTGTTCCTCCCCTTGAGCCCAAGTTGGCAGCAGGCTGTTG
TGGGGTCAAGAAGCCCAAATTATCTGGAAGTGGAACACACAGTCCCGGTAACCAGTCCACTACT
GTTCCTGGCTCAAGTTCAGGACCTCTTCAAACCCACCAGCATGTGGACAGCAGCAGTGGTCGGG
AAAATGTATCAGACTTAACTCTGGGACCTGGAAACTCCCCCATCACACGAATGAATCCTGCATC
TGGAGCCCTGAGCCCTCTCCCCCGGCCCAATGGAACTGCCAATACCACTAAGAACCTGGTGGTG
ACTGCAGAAATGTGCTGCTACTGCTTTGATGTACTCTACTGTCACCTCTATGGCTTTCCACAGC
CACGACTTCCTAGATTCACCAATGACCCCTATCCTCTCTTTGTGACCTGGAAGACAGGGCGAGA
CAAGCGGCTCCGTGGCTGCATTGGGACCTTCTCAGCCATGAATCTTCATTCAGGACTCAGGGAA
TACACGTTAACCAGTGCACTTAAGGACAGCCGATTCCCCCCCCTGACCCGAGAGGAGCTGCCCA
AACTTTTCTGTTCTGTCTCCCTCCTTACTAACTTTGAAGATGCCAGTGATTACCTGGACTGGGA
GGTAGGGGTCCATGGGATTCGGATTGAATTCATCAATGAAAAAGGCATCAAACGCACAGCCACA
TATTTACCTGAGGTTGCTAAGGAACAAGACTGGGATCAGATCCAGACAATAGACTCCTTGCTCA
GGAAAGGTGGTTTTAAGGCTCCAATTACCAGTGAATTCAGAAAATCAATCAAACTCACAAGGTA
TCGAAGTGAGAAGGTGACAATCAGTTATGCAGAGTATATTGCTTCTCGACAGCACTGTTTCCAG
AATGGCACTCTTCATGCCCCGCCCCTCTACAATCATTACTCCTGACACAAGGCTACATGACCAG
TCCCACCCCCCTGTGGCCACCAATGGCTATGACATCATTGGAGCAGATGCCTCCTCTTCCTGGT
CCAGTTACTTCTATTACTGCACCATTTTATGATGCTAGCTTCCGTTGCCAAGTCTGCCTCCTGC
TGACTGGAGGGTGTGGGGATACATTGAATGCAACAGAACATGAGGGGCCCAAGCCTTATATCAG
CCTTTCCCTCAATCTGGGGTTCTGTTGGATCAGGGCTCCCCAATAACCAGTGAGAATGGCTGTG
TGGGTTCAGAAGACTGTTGTCTGGCGATTTCCCACATATGTTGGCCACACACTGACTACTGGAA
TTGACGGTGATCCATGGAGGCTTCTTCCCCAACCCCCCACAGCCCACCAGATCAATTAGGTGTA
CTCCCCTGGCAGTCTGGGCAACGGAGACCAACATGAACCACTTTTAGGTTGTTTTAAATTCCTT
TTTTTAAACTTCCAGTTTATTGTGTACCAAGAGTTGATCCACAACCTCCATGCTTCATAAGTGA
ACACCATGTTAGGGTTGAATGTGGGCACCATGAGCCCCTGTGAGTCCTGGACAAGATTCTCGTA
CCAAGATCAGAAGTCCTGTGGATGACATTTCATTGTGCAGTAAGCTGTGAAGGTTTTCATGCTT
ACCTGACTCTCAGCGGACGCTCTGGTACTCTTCCTGCATTGAGTCTCCTGGTGTTGAACAGAGC
TCTGTGGCATAGCCTGCTGAGGAATGGAATGGAGATGCCCATAGAGGTCCAAATGTCATCATCG
TAAGCAGGTGTGAAAGGAGAGATCTCTTCCTCACCACCCGGCTACCTCACCTCTTCTCTGGTAG
CAGTGCCTATGTAGCTGCATCTAGGTTCTCAGAAGCACAGACATGTAAACAGGTGGATGGGTTG
GGCTTTAGGACATACTGTCACAGGAGAGCTTCCAGGGTCTCTGAGCTGATTTTCTTCACAGGCA
AACATCCTGAGGGACCTTTAAGTAGGGGAGTTCTTTCTTCTGATTTGCCTGAAGAAGTAGGAAG
ACTTGATATCAGTCCTCAGTAGGACTCTAGAACAATGCTGTGTAATAAAACAAGGTGAACCTTT
AACTTGCCTACCATACTGGGACTCTTCACCTCACCAGTGCAAATGTCCAAACTGTTCGTGTTGC
TCATTTAAAAACTCTTGACATTCCCTCTCCCATCTTTACTCATTCCAACATAGCTGTTAGCAAA
TTCTTTTCACTCACCTGGTGACAAAACACTTAGTACTAGGAAACTAGGGAGGTGCTTTGAAAGC
TCTGTCTCACAGGCACTGCTCAGGCAACTCAAGGGAACGGCCGGCTGGAAGAAAGGCTCCTGAG
GATGACAAACTGGTTTTCATCAATGTTCATAGAGAACTCATGAGGGGGATGTGGCCTCAAGTCG
GTGAACATATGTTTTGGTTTCGTTTTCAAAATTGATGTGATGGTGTGGTTTCCAAAATGGGCAA
CTATTCAAGTCATATGATCATCTGAGTTTCCTGTGCCAGGCATGGAAGGGAAGTAGGGCTACTT
CCTGTGTGCTATTCTGGCATCACTCAAAAGTTCCTGGGTTTTTGTTTTTTGTTTTTTTTAAACT
GGGCACAGAGGTTGTACCAGAAGTGGTTATGGGCCTGGAACGGATGGGTGAGGGAAGCGTGGAT
AACACTGGAATACCCAGGATGCATGCCCCTTACTGTCAGGTTGGGTTCCTTCACATGCACAGCA
TGAAGGGGTCCCATGCTGCTGAGAGGAATGACGGCTACGTCATTAACATGTGGCAGCAGGTGCT
CTCAGGTGCCATGGATTGATGCAGGGTGCTCAGCTCTGGACTGAGCCACCCACATCTAATTTGT
AAAACAGTATTGATACATAGGGCTACACTCATTCTGTTCAAGCGTTCTGTGTTGAGTTGTTTAA
TTTCTAAAGATTTAAAGCAAAATGCAAAAAAAAAAAAAATGGTGCTAAACTTCACCCCTGAGCA
CTCTCAGTGAGACTGGTCATGTAAGCATCTACAGTGCCATGCTCCTCAAGCCTGTTTTTCTTGT
AGAAATGTTGCCCTATCTTGTCTTCCCCAATGTATAGTATGTATTTTATTTTATCGAGGGTAGG
GTAGAATACCTGCCATTTAAGAAAAATGAACAGAAAGACCCAAAAAGTTGAGGGGGGGGTTAGT
AAACAGAGTCCAGCTGGCAAAGCCTGGCACACTGAAGTGGGCTCAGTGGTTTTAGAGTGAAGAA
GCCTTACTCCCTGCACATTCCCTCGTGTTCCCATGGCAGTACAAATGCTCAAGTTCCTTCTGTC
TTGTCAAAGAGACTTGGAAATCAGGCAAAGAAAACTATTTGGTCCAAAAGAAATGGGCTCTGCT
GGTGTCAGTCCTAACTGGAGCATAGTTATTAACAAGTCGAAGTACACAGTCTTGGTCACCTCAT
GGGAACATGTGGCAGGAAGCTTTCAGGAAAAAGCCACTGTGGATTGTCCACATGAGGGGGGGGA
GGGGCTTTGCATAGGGAGGTAATGCTCTGAATTAGAACTGAGCTGCCTTCTACACGCTGACCAA
AGCAGTGATAAGAATGGCCAGTATGGGGCCAGTAAGTGGTGGTGGTGGAAAGGGACCGTTTCCT
GCCCTGGGTTTCCTTTAGTGATAGGCTGCTCAAACAGAGGTCACCACTGTTCTCAAAGAGCCAG
CTGAACTCTGCTGGCTTGGTTTAGAATTTGTTTCATCCCTAGCTGTGAGTGCCTTTTGGTCTGG
AAAGTTGGCTTGTCTCATCATACCCACAGCTAGGACATATACTCTGTAATTATGAATTGTCCTT
GTTTTCCTGAGCTAAAAGCGAATGTCTTTGATCACTAGAGTTTGTCAGTGTTGGGTTGTTTCCA
CTGTGAGGTTCTTAAAAAACGTTTTCGCTTCATAATGTTAAAATAACTCATGTTAGAAACCCTT
TCCACATGAAGGGTTTGTAGTTGAGACATATATATTTTACTGTTTATAATAAAAAAAATCATCT
ATACAAAAGTCTTGGGTGTTAATTTTAATATTTTGAGCAAAAT

hide sequence

RefSeq Acc Id:

XM_006254590 ⟹ XP_006254652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,664 - 23,685,356 (+)	NCBI
mRatBN7.2	18	23,387,189 - 23,411,177 (+)	NCBI
Rnor_6.0	18	24,539,816 - 24,563,541 (+)	NCBI
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI

Sequence:

show sequence

CTGTGCCGTGCTTTCTCTTGCCAGGCCTTCTCGAGGCCTGTTCAGTTCCGAGGCAGACAGTACC
CTGGAGAGTGGAGTCTCGAGGTGCCGGGCGAGGGGTCCCGGGGCGCCATGGGGGAGGGGCACAT
GGAGGCGGCCACCGCGGGTGGGCAAGGCCTCCTCCGGGCTGTCTGTCCCCGTCGAGGACTAACG
GGATCGTGAGGCCGTGTACCCGAGTTCTGGGTGGCAGGGTCGCCCCTGGCCAAGGAGGCGAGGC
AGCAGTTGTAGCCTCAGTGCCTGAAGTCCCTCCAGGAAACAGTCGGAGGAAAGTTTGGTGGTCT
CCTGCGCCGCCTGGTGGCCCCCCACCCAGAGTCCCCTCCCCCGCCCGGCGTCTGGATTCCACCC
CCGCGGCCCAGACCCAGTTGCTCTACCCGTCGCCCTGTCGTTTCCCCAACTCCCACTGCGCCCT
GTACTCTCCTGTCCCACATCCTCCTTTTCACCTTTTCCTTCTGCCTATTAAACCCCTCCCGGTC
TCCTCTTTCCCCCTTGTCTCATCGTTTTCTTGCTTAACTCTCTTCTCGCGCTTTATTTTCTTTT
TTTCCTCCCGCCCCACCTCCCGTATCTACTTGTAGCCCCTCTTGCCTACAACCATCCCTCCATC
TTAAACTTTGGGTCTTATGCCTGTCCTCGGAGCTGTGTGGCTTTTGCCCTTCATTCCTTGCCCT
GATCTGACCCCTCTCTTTGCTCACTTATCCCTCTGGGCCTATCTGCTTTCAGTGCCCTCTCTTA
GGATTGAGTGGGTGGGGCCTGGAGTTTCTGCTTTGCATAAATTCTGTAGTACTGGGGAAGTAGG
AAAGGTGGAGGAGATTGCGAAGAAGAGATTCGTGCAAAGCTGAGTAAGGATGAATGGCTCCACC
AACACTTACCATCGTCTCCTGGCACAAGGTATTGGAAGAAGGGATGGAATTGGAAGAAAGAAGA
TTCATTCCAGAGACAAAATAGCTCCCCTCTCCTATTGTAGCTGTTTCCTCTGGGACTATAAACT
TTCTGCTTTCAGGTTCTGCAGCATCCCAGATCACAAACACCAGATCAGGATGGGAAAAAGACGT
TGTGTTCCTCCCCTTGAGCCCAAGTTGGCAGCAGGCTGTTGTGGGGTCAAGAAGCCCAAATTAT
CTGGAAGTGGAACACACAGTCCCGGTAACCAGTCCACTACTGTTCCTGGCTCAAGTTCAGGACC
TCTTCAAACCCACCAGCATGTGGACAGCAGCAGTGGTCGGGAAAATGTATCAGACTTAACTCTG
GGACCTGGAAACTCCCCCATCACACGAATGAATCCTGCATCTGGAGCCCTGAGCCCTCTCCCCC
GGCCCAATGGAACTGCCAATACCACTAAGAACCTGGTGGTGACTGCAGAAATGTGCTGCTACTG
CTTTGATGTACTCTACTGTCACCTCTATGGCTTTCCACAGCCACGACTTCCTAGATTCACCAAT
GACCCCTATCCTCTCTTTGTGACCTGGAAGACAGGGCGAGACAAGCGGCTCCGTGGCTGCATTG
GGACCTTCTCAGCCATGAATCTTCATTCAGGACTCAGGGAATACACGTTAACCAGTGCACTTAA
GGACAGCCGATTCCCCCCCCTGACCCGAGAGGAGCTGCCCAAACTTTTCTGTTCTGTCTCCCTC
CTTACTAACTTTGAAGATGCCAGTGATTACCTGGACTGGGAGGTAGGGGTCCATGGGATTCGGA
TTGAATTCATCAATGAAAAAGGCATCAAACGCACAGCCACATATTTACCTGAGGTTGCTAAGGA
ACAAGACTGGGATCAGATCCAGACAATAGACTCCTTGCTCAGGAAAGGTGGTTTTAAGGCTCCA
ATTACCAGTGAATTCAGAAAATCAATCAAACTCACAAGGTATCGAAGTGAGAAGGTGACAATCA
GTTATGCAGAGTATATTGCTTCTCGACAGCACTGTTTCCAGAATGGCACTCTTCATGCCCCGCC
CCTCTACAATCATTACTCCTGACACAAGGCTACATGACCAGTCCCACCCCCCTGTGGCCACCAA
TGGCTATGACATCATTGGAGCAGATGCCTCCTCTTCCTGGTCCAGTTACTTCTATTACTGCACC
ATTTTATGATGCTAGCTTCCGTTGCCAAGTCTGCCTCCTGCTGACTGGAGGGTGTGGGGATACA
TTGAATGCAACAGAACATGAGGGGCCCAAGCCTTATATCAGCCTTTCCCTCAATCTGGGGTTCT
GTTGGATCAGGGCTCCCCAATAACCAGTGAGAATGGCTGTGTGGGTTCAGAAGACTGTTGTCTG
GCGATTTCCCACATATGTTGGCCACACACTGACTACTGGAATTGACGGTGATCCATGGAGGCTT
CTTCCCCAACCCCCCACAGCCCACCAGATCAATTAGGTGTACTCCCCTGGCAGTCTGGGCAACG
GAGACCAACATGAACCACTTTTAGGTTGTTTTAAATTCCTTTTTTTAAACTTCCAGTTTATTGT
GTACCAAGAGTTGATCCACAACCTCCATGCTTCATAAGTGAACACCATGTTAGGGTTGAATGTG
GGCACCATGAGCCCCTGTGAGTCCTGGACAAGATTCTCGTACCAAGATCAGAAGTCCTGTGGAT
GACATTTCATTGTGCAGTAAGCTGTGAAGGTTTTCATGCTTACCTGACTCTCAGCGGACGCTCT
GGTACTCTTCCTGCATTGAGTCTCCTGGTGTTGAACAGAGCTCTGTGGCATAGCCTGCTGAGGA
ATGGAATGGAGATGCCCATAGAGGTCCAAATGTCATCATCGTAAGCAGGTGTGAAAGGAGAGAT
CTCTTCCTCACCACCCGGCTACCTCACCTCTTCTCTGGTAGCAGTGCCTATGTAGCTGCATCTA
GGTTCTCAGAAGCACAGACATGTAAACAGGTGGATGGGTTGGGCTTTAGGACATACTGTCACAG
GAGAGCTTCCAGGGTCTCTGAGCTGATTTTCTTCACAGGCAAACATCCTGAGGGACCTTTAAGT
AGGGGAGTTCTTTCTTCTGATTTGCCTGAAGAAGTAGGAAGACTTGATATCAGTCCTCAGTAGG
ACTCTAGAACAATGCTGTGTAATAAAACAAGGTGAACCTTTAACTTGCCTACCATACTGGGACT
CTTCACCTCACCAGTGCAAATGTCCAAACTGTTCGTGTTGCTCATTTAAAAACTCTTGACATTC
CCTCTCCCATCTTTACTCATTCCAACATAGCTGTTAGCAAATTCTTTTCACTCACCTGGTGACA
AAACACTTAGTACTAGGAAACTAGGGAGGTGCTTTGAAAGCTCTGTCTCACAGGCACTGCTCAG
GCAACTCAAGGGAACGGCCGGCTGGAAGAAAGGCTCCTGAGGATGACAAACTGGTTTTCATCAA
TGTTCATAGAGAACTCATGAGGGGGATGTGGCCTCAAGTCGGTGAACATATGTTTTGGTTTCGT
TTTCAAAATTGATGTGATGGTGTGGTTTCCAAAATGGGCAACTATTCAAGTCATATGATCATCT
GAGTTTCCTGTGCCAGGCATGGAAGGGAAGTAGGGCTACTTCCTGTGTGCTATTCTGGCATCAC
TCAAAAGTTCCTGGGTTTTTGTTTTTTGTTTTTTTTAAACTGGGCACAGAGGTTGTACCAGAAG
TGGTTATGGGCCTGGAACGGATGGGTGAGGGAAGCGTGGATAACACTGGAATACCCAGGATGCA
TGCCCCTTACTGTCAGGTTGGGTTCCTTCACATGCACAGCATGAAGGGGTCCCATGCTGCTGAG
AGGAATGACGGCTACGTCATTAACATGTGGCAGCAGGTGCTCTCAGGTGCCATGGATTGATGCA
GGGTGCTCAGCTCTGGACTGAGCCACCCACATCTAATTTGTAAAACAGTATTGATACATAGGGC
TACACTCATTCTGTTCAAGCGTTCTGTGTTGAGTTGTTTAATTTCTAAAGATTTAAAGCAAAAT
GCAAAAAAAAAAAAAATGGTGCTAAACTTCACCCCTGAGCACTCTCAGTGAGACTGGTCATGTA
AGCATCTACAGTGCCATGCTCCTCAAGCCTGTTTTTCTTGTAGAAATGTTGCCCTATCTTGTCT
TCCCCAATGTATAGTATGTATTTTATTTTATCGAGGGTAGGGTAGAATACCTGCCATTTAAGAA
AAATGAACAGAAAGACCCAAAAAGTTGAGGGGGGGGTTAGTAAACAGAGTCCAGCTGGCAAAGC
CTGGCACACTGAAGTGGGCTCAGTGGTTTTAGAGTGAAGAAGCCTTACTCCCTGCACATTCCCT
CGTGTTCCCATGGCAGTACAAATGCTCAAGTTCCTTCTGTCTTGTCAAAGAGACTTGGAAATCA
GGCAAAGAAAACTATTTGGTCCAAAAGAAATGGGCTCTGCTGGTGTCAGTCCTAACTGGAGCAT
AGTTATTAACAAGTCGAAGTACACAGTCTTGGTCACCTCATGGGAACATGTGGCAGGAAGCTTT
CAGGAAAAAGCCACTGTGGATTGTCCACATGAGGGGGGGGAGGGGCTTTGCATAGGGAGGTAAT
GCTCTGAATTAGAACTGAGCTGCCTTCTACACGCTGACCAAAGCAGTGATAAGAATGGCCAGTA
TGGGGCCAGTAAGTGGTGGTGGTGGAAAGGGACCGTTTCCTGCCCTGGGTTTCCTTTAGTGATA
GGCTGCTCAAACAGAGGTCACCACTGTTCTCAAAGAGCCAGCTGAACTCTGCTGGCTTGGTTTA
GAATTTGTTTCATCCCTAGCTGTGAGTGCCTTTTGGTCTGGAAAGTTGGCTTGTCTCATCATAC
CCACAGCTAGGACATATACTCTGTAATTATGAATTGTCCTTGTTTTCCTGAGCTAAAAGCGAAT
GTCTTTGATCACTAGAGTTTGTCAGTGTTGGGTTGTTTCCACTGTGAGGTTCTTAAAAAACGTT
TTCGCTTCATAATGTTAAAATAACTCATGTTAGAAACCCTTTCCACATGAAGGGTTTGTAGTTG
AGACATATATATTTTACTGTTTATAATAAAAAAAAATCATCTATACAAAA

hide sequence

RefSeq Acc Id:

XM_006254591 ⟹ XP_006254653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,649 - 23,682,384 (+)	NCBI
mRatBN7.2	18	23,387,176 - 23,411,177 (+)	NCBI
Rnor_6.0	18	24,539,814 - 24,563,541 (+)	NCBI
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI

Sequence:

show sequence

GGCTGTGCCGTGCTTTCTCTTGCCAGGCCTTCTCGAGGCCTGTTCAGTTCCGAGGCAGACAGTA
CCCTGGAGAGTGGAGTCTCGAGGTGCCGGGCGAGGGGTCCCGGGGCGCCATGGGGGAGGGGCAC
ATGGAGGCGGCCACCGCGGGTGGGCAAGGCCTCCTCCGGGCTGTCTGTCCCCGTCGAGGACTAA
CGGGATCGTGAGGCCGTGTACCCGAGTTCTGGGTGGCAGGGTCGCCCCTGGCCAAGGAGGCGAG
GCAGCAGTTGTAGCCTCAGTGCCTGAAGTCCCTCCAGGAAACAGTCGGAGGAAAGTTTGGTGGT
CTCCTGCGCCGCCTGGTGGCCCCCCACCCAGAGTCCCCTCCCCCGCCCGGCGTCTGGATTCCAC
CCCCGCGGCCCAGACCCAGTTGCTCTACCCGTCGCCCTGTCGTTTCCCCAACTCCCACTGCGCC
CTGTACTCTCCTGTCCCACATCCTCCTTTTCACCTTTTCCTTCTGCCTATTAAACCCCTCCCGG
TCTCCTCTTTCCCCCTTGTCTCATCGTTTTCTTGCTTAACTCTCTTCTCGCGCTTTATTTTCTT
TTTTTCCTCCCGCCCCACCTCCCGTATCTACTTGTAGCCCCTCTTGCCTACAACCATCCCTCCA
TCTTAAACTTTGGGTCTTATGCCTGTCCTCGGAGCTGTGTGGCTTTTGCCCTTCATTCCTTGCC
CTGATCTGACCCCTCTCTTTGCTCACTTATCCCTCTGGGCCTATCTGCTTTCAGTGCCCTCTCT
TAGGATTGAGTGGGTGGGGCCTGGAGTTTCTGCTTTGCATAAATTCTGTAGTACTGGGGAAGTA
GGAAAGGTGGAGGAGATTGCGAAGAAGAGATTCGTGCAAAGCTGAGTAAGGATGAATGGCTCCA
CCAACACTTACCATCGTCTCCTGGCACAAGGTGCCTTGTCCTCAGGGGCCTAGCATGTTGTCCG
GTATTGGAAGAAGGGATGGAATTGGAAGAAAGAAGATTCATTCCAGAGACAAAATAGCTCCCCT
CTCCTATTGTAGCTGTTTCCTCTGGGACTATAAACTTTCTGCTTTCAGGTTCTGCAGCATCCCA
GATCACAAACACCAGATCAGGATGGGAAAAAGACGTTGTGTTCCTCCCCTTGAGCCCAAGTTGG
CAGCAGGCTGTTGTGGGGTCAAGAAGCCCAAATTATCTGGAAGTGGAACACACAGTCCCGGTAA
CCAGTCCACTACTGTTCCTGGCTCAAGTTCAGGACCTCTTCAAACCCACCAGCATGTGGACAGC
AGCAGTGGTCGGGAAAATGTATCAGACTTAACTCTGGGACCTGGAAACTCCCCCATCACACGAA
TGAATCCTGCATCTGGAGCCCTGAGCCCTCTCCCCCGGCCCAATGGAACTGCCAATACCACTAA
GAACCTGGTGGTGACTGCAGAAATGTGCTGCTACTGCTTTGATGTACTCTACTGTCACCTCTAT
GGCTTTCCACAGCCACGACTTCCTAGATTCACCAATGACCCCTATCCTCTCTTTGTGACCTGGA
AGACAGGGCGAGACAAGCGGCTCCGTGGCTGCATTGGGACCTTCTCAGCCATGAATCTTCATTC
AGGACTCAGGGAATACACGTTAACCAGTGCACTTAAGGACAGCCGATTCCCCCCCCTGACCCGA
GAGGAGCTGCCCAAACTTTTCTGTTCTGTCTCCCTCCTTACTAACTTTGAAGATGCCAGTGATT
ACCTGGACTGGGAGGTAGGGGTCCATGGGATTCGGATTGAATTCATCAATGAAAAAGGCATCAA
ACGCACAGCCACATATTTACCTGAGGTTGCTAAGGAACAAGACTGGGATCAGATCCAGACAATA
GACTCCTTGCTCAGGAAAGGTGGTTTTAAGGCTCCAATTACCAGTGAATTCAGAAAATCAATCA
AACTCACAAGAGCAAAGCCAAAGTGCTATGAATTCTGTTCTGATGACCCCGTGATATGGCATAT
TCATCTGGGGAGTGAGACCTTCCTATAGCCAAGGATCCATTAACCTGCTTCACCAGAATTTGAC
CCAGAATTAGGTATCGAAGTGAGAAGGTGACAATCAGTTATGCAGAGTATATTGCTTCTCGACA
GCACTGTTTCCAGAATGGCACTCTTCATGCCCCGCCCCTCTACAATCATTACTCCTGACACAAG
GCTACATGACCAGTCCCACCCCCCTGTGGCCACCAATGGCTATGACATCATTGGAGCAGATGCC
TCCTCTTCCTGGTCCAGTTACTTCTATTACTGCACCATTTTATGATGCTAGCTTCCGTTGCCAA
GTCTGCCTCCTGCTGACTGGAGGGTGTGGGGATACATTGAATGCAACAGAACATGAGGGGCCCA
AGCCTTATATCAGCCTTTCCCTCAATCTGGGGTTCTGTTGGATCAGGGCTCCCCAATAACCAGT
GAGAATGGCTGTGTGGGTTCAGAAGACTGTTGTCTGGCGATTTCCCACATATGTTGGCCACACA
CTGACTACTGGAATTGACGGTGATCCATGGAGGCTTCTTCCCCAACCCCCCACAGCCCACCAGA
TCAATTAGGTGTACTCCCCTGGCAGTCTGGGCAACGGAGACCAACATGAACCACTTTTAGGTTG
TTTTAAATTCCTTTTTTTAAACTTCCAGTTTATTGTGTACCAAGAGTTGATCCACAACCTCCAT
GCTTCATAAGTGAACACCATGTTAGGGTTGAATGTGGGCACCATGAGCCCCTGTGAGTCCTGGA
CAAGATTCTCGTACCAAGATCAGAAGTCCTGTGGATGACATTTCATTGTGCAGTAAGCTGTGAA
GGTTTTCATGCTTACCTGACTCTCAGCGGACGCTCTGGTACTCTTCCTGCATTGAGTCTCCTGG
TGTTGAACAGAGCTCTGTGGCATAGCCTGCTGAGGAATGGAATGGAGATGCCCATAGAGGTCCA
AATGTCATCATCGTAAGCAGGTGTGAAAGGAGAGATCTCTTCCTCACCACCCGGCTACCTCACC
TCTTCTCTGGTAGCAGTGCCTATGTAGCTGCATCTAGGTTCTCAGAAGCACAGACATGTAAACA
GGTGGATGGGTTGGGCTTTAGGACATACTGTCACAGGAGAGCTTCCAGGGTCTCTGAGCTGATT
TTCTTCACAGGCAAACATCCTGAGGGACCTTTAAGTAGGGGAGTTCTTTCTTCTGATTTGCCTG
AAGAAGTAGGAAGACTTGATATCAGTCCTCAGTAGGACTCTAGAACAATGCTGTGTAATAAAAC
AAGGTGAACCTTTAACTTGCCTACCATACTGGGACTCTTCACCTCACCAGTGCAAATGTCCAAA
CTGTTCGTGTTGCTCATTTAAAAACTCTTGACATTCCCTCTCCCATCTTTACTCATTCCAACAT
AGCTGTTAGCAAATTCTTTTCACTCACCTGGTGACAAAACACTTAGTACTAGGAAACTAGGGAG
GTGCTTTGAAAGCTCTGTCTCACAGGCACTGCTCAGGCAACTCAAGGGAACGGCCGGCTGGAAG
AAAGGCTCCTGAGGATGACAAACTGGTTTTCATCAATGTTCATAGAGAACTCATGAGGGGGATG
TGGCCTCAAGTCGGTGAACATATGTTTTGGTTTCGTTTTCAAAATTGATGTGATGGTGTGGTTT
CCAAAATGGGCAACTATTCAAGTCATATGATCATCTGAGTTTCCTGTGCCAGGCATGGAAGGGA
AGTAGGGCTACTTCCTGTGTGCTATTCTGGCATCACTCAAAAGTTCCTGGGTTTTTGTTTTTTG
TTTTTTTTAAACTGGGCACAGAGGTTGTACCAGAAGTGGTTATGGGCCTGGAACGGATGGGTGA
GGGAAGCGTGGATAACACTGGAATACCCAGGATGCATGCCCCTTACTGTCAGGTTGGGTTCCTT
CACATGCACAGCATGAAGGGGTCCCATGCTGCTGAGAGGAATGACGGCTACGTCATTAACATGT
GGCAGCAGGTGCTCTCAGGTGCCATGGATTGATGCAGGGTGCTCAGCTCTGGACTGAGCCACCC
ACATCTAATTTGTAAAACAGTATTGATACATAGGGCTACACTCATTCTGTTCAAGCGTTCTGTG
TTGAGTTGTTTAATTTCTAAAGATTTAAAGCAAAATGCAAAAAAAAAAAAAATGGTGCTAAACT
TCACCCCTGAGCACTCTCAGTGAGACTGGTCATGTAAGCATCTACAGTGCCATGCTCCTCAAGC
CTGTTTTTCTTGTAGAAATGTTGCCCTATCTTGTCTTCCCCAATGTATAGTATGTATTTTATTT
TATCGAGGGTAGGGTAGAATACCTGCCATTTAAGAAAAATGAACAGAAAGACCCAAAAAGTTGA
GGGGGGGGTTAGTAAACAGAGTCCAGCTGGCAAAGCCTGGCACACTGAAGTGGGCTCAGTGGTT
TTAGAGTGAAGAAGCCTTACTCCCTGCACATTCCCTCGTGTTCCCATGGCAGTACAAATGCTCA
AGTTCCTTCTGTCTTGTCAAAGAGACTTGGAAATCAGGCAAAGAAAACTATTTGGTCCAAAAGA
AATGGGCTCTGCTGGTGTCAGTCCTAACTGGAGCATAGTTATTAACAAGTCGAAGTACACAGTC
TTGGTCACCTCATGGGAACATGTGGCAGGAAGCTTTCAGGAAAAAGCCACTGTGGATTGTCCAC
ATGAGGGGGGGGAGGGGCTTTGCATAGGGAGGTAATGCTCTGAATTAGAACTGAGCTGCCTTCT
ACACGCTGACCAAAGCAGTGATAAGAATGGCCAGTATGGGGCCAGTAAGTGGTGGTGGTGGAAA
GGGACCGTTTCCTGCCCTGGGTTTCCTTTAGTGATAGGCTGCTCAAACAGAGGTCACCACTGTT
CTCAAAGAGCCAGCTGAACTCTGCTGGCTTGGTTTAGAATTTGTTTCATCCCTAGCTGTGAGTG
CCTTTTGGTCTGGAAAGTTGGCTTGTCTCATCATACCCACAGCTAGGACATATACTCTGTAATT
ATGAATTGTCCTTGTTTTCCTGAGCTAAAAGCGAATGTCTTTGATCACTAGAGTTTGTCAGTGT
TGGGTTGTTTCCACTGTGAGGTTCTTAAAAAACGTTTTCGCTTCATAATGTTAAAATAACTCAT
GTTAGAAACCCTTTCCACATGAAGGGTTTGTAGTTGAGACATATATATTTTACTGTTTATAATA
AAAAAAAATCATCTATACAAAA

hide sequence

RefSeq Acc Id:

XM_039096877 ⟹ XP_038952805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,651 - 23,682,384 (+)	NCBI
mRatBN7.2	18	23,387,178 - 23,411,177 (+)	NCBI

RefSeq Acc Id:

XM_039096878 ⟹ XP_038952806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,651 - 23,681,725 (+)	NCBI
mRatBN7.2	18	23,387,178 - 23,407,248 (+)	NCBI

RefSeq Acc Id:

XR_005496041

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,656 - 23,682,231 (+)	NCBI
mRatBN7.2	18	23,387,182 - 23,407,772 (+)	NCBI

RefSeq Acc Id:

XR_010059577

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,650 - 23,682,237 (+)	NCBI

RefSeq Acc Id:

XR_361285

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,661,651 - 23,680,528 (+)	NCBI
mRatBN7.2	18	23,387,178 - 23,406,010 (+)	NCBI
Rnor_6.0	18	24,539,813 - 24,558,696 (+)	NCBI
Rnor_5.0	18	24,256,630 - 24,281,031 (+)	NCBI

Sequence:

show sequence

GGGCTGTGCCGTGCTTTCTCTTGCCAGGCCTTCTCGAGGCCTGTTCAGTTCCGAGGCAGACAGT
ACCCTGGAGAGTGGAGTCTCGAGGTGCCGGGCGAGGGGTCCCGGGGCGCCATGGGGGAGGGGCA
CATGGAGGCGGCCACCGCGGGTGGGCAAGGCCTCCTCCGGGCTGTCTGTCCCCGTCGAGGACTA
ACGGGATCGTGAGGCCGTGTACCCGAGTTCTGGGTGGCAGGGTCGCCCCTGGCCAAGGAGGCGA
GGCAGCAGTTGTAGCCTCAGTGCCTGAAGTCCCTCCAGGAAACAGTCGGAGGAAAGTTTGGTGG
TCTCCTGCGCCGCCTGGTGGCCCCCCACCCAGAGTCCCCTCCCCCGCCCGGCGTCTGGATTCCA
CCCCCGCGGCCCAGACCCAGTTGCTCTACCCGTCGCCCTGTCGTTTCCCCAACTCCCACTGCGC
CCTGTACTCTCCTGTCCCACATCCTCCTTTTCACCTTTTCCTTCTGCCTATTAAACCCCTCCCG
GTCTCCTCTTTCCCCCTTGTCTCATCGTTTTCTTGCTTAACTCTCTTCTCGCGCTTTATTTTCT
TTTTTTCCTCCCGCCCCACCTCCCGTATCTACTTGTAGCCCCTCTTGCCTACAACCATCCCTCC
ATCTTAAACTTTGGGTCTTATGCCTGTCCTCGGAGCTGTGTGGCTTTTGCCCTTCATTCCTTGC
CCTGATCTGACCCCTCTCTTTGCTCACTTATCCCTCTGGGCCTATCTGCTTTCAGTGCCCTCTC
TTAGGATTGAGTGGGTGGGGCCTGGAGTTTCTGCTTTGCATAAATTCTGTAGTACTGGGGAAGT
AGGAAAGGTGGAGGAGATTGCGAAGAAGAGATTCGTGCAAAGCTGAGTAAGGATGAATGGCTCC
ACCAACACTTACCATCGTCTCCTGGCACAAGGTGCCTTGTCCTCAGGGGCCTAGCATGTTGTCC
GGTATTGGAAGAAGGGATGGAATTGGAAGAAAGAAGATTCATTCCAGAGACAAAATAGCTCCCC
TCTCCTATTGTAGCTGTTTCCTCTGGGACTATAAACTTTCTGCTTTCAGGTTCTGCAGCATCCC
AGATCACAAACACCAGATCAGGATGGGAAAAAGACGTTGTGTTCCTCCCCTTGAGCCCAAGTTG
GCAGCAGGCTGTTGTGGGGTCAAGAAGCCCAAATTATCTGGAAGTGGAACACACAGTCCCGGTA
ACCAGTCCACTACTGTTCCTGGCTCAAGTTCAGGACCTCTTCAAACCCACCAGCATGTGGACAG
CAGCAGTGGTCGGGAAAATGTATCAGACTTAACTCTGGGACCTGGAAACTCCCCCATCACACGA
ATGAATCCTGCATCTGGAGCCCTGAGCCCTCTCCCCCGGCCCAATGGAACTGCCAATACCACTA
AGAACCTGGTGGTGACTGCAGAAATGTGCTGCTACTGCTTTGATGTACTCTACTGTCACCTCTA
TGGCTTTCCACAGCCACGACTTCCTAGATTCACCAATGACCCCTATCCTCTCTTTGTGACCTGG
AAGACAGGGCGAGACAAGCGGCTCCGTGGCTGCATTGGGACCTTCTCAGCCATGAATCTTCATT
CAGGACTCAGGGAATACACGTTAACCAGTGCACTTAAGGACAGCCGATTCCCCCCCCTGACCCG
AGAGGAGCTGCCCAAACTTTTCTGTTCTGTCTCCCTCCTTACTAACTTTGAAGATGCCAGTGAT
TACCTGGACTGGGAGGTGAGAACAGCTGCATTTGGAACTCTGCATCTCTCGTTGCATTTGGGTT
CGGGTAGGGGTCCATGGGATTCGGATTGAATTCATCAATGAAAAAGGCATCAAACGCACAGCCA
CATATTTACCTGAGGTTGCTAAGGAACAAGACTGGGATCAGATCCAGACAATAGACTCCTTGCT
CAGGAAAGGTGGTTTTAAGGCTCCAATTACCAGTGAATTCAGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100869	(Get FASTA)	NCBI Sequence Viewer
	XP_006254652	(Get FASTA)	NCBI Sequence Viewer
	XP_006254653	(Get FASTA)	NCBI Sequence Viewer
	XP_038952805	(Get FASTA)	NCBI Sequence Viewer
	XP_038952806	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68199	(Get FASTA)	NCBI Sequence Viewer
	EDL76171	(Get FASTA)	NCBI Sequence Viewer
	EDL76172	(Get FASTA)	NCBI Sequence Viewer
	EDL76173	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057790
	ENSRNOP00000057790.4
	ENSRNOP00000095073
	ENSRNOP00000095073.1
	ENSRNOP00000099320.1

RefSeq Acc Id:

NP_001100869 ⟸ NM_001107399

- UniProtKB:

A6J2N9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPPTLTIVSWHKVPCPQGPSMLSGIGRRDGIGRKKIHSRDKIAPLSYCSCFLWDYKLSAFRFC
SIPDHKHQIRMGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSPGNQSTTVPGSSSGPLQTHQH
VDSSSGRENVSDLTLGPGNSPITRMNPASGALSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYC
HLYGFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPP
LTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGIKRTATYLPEVAKEQDWDQI
QTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEYIASRQHCFQNGTLHAPPLYNHYS

hide sequence

RefSeq Acc Id:	XP_006254653 ⟸ XM_006254591
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GL02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPPTLTIVSWHKVPCPQGPSMLSGIGRRDGIGRKKIHSRDKIAPLSYCSCFLWDYKLSAFRFC SIPDHKHQIRMGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSPGNQSTTVPGSSSGPLQTHQH VDSSSGRENVSDLTLGPGNSPITRMNPASGALSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYC HLYGFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPP LTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGIKRTATYLPEVAKEQDWDQI QTIDSLLRKGGFKAPITSEFRKSIKLTRAKPKCYEFCSDDPVIWHIHLGSETFL hide sequence

RefSeq Acc Id:	XP_006254652 ⟸ XM_006254590
- Peptide Label:	isoform X1
- UniProtKB:	G3V9S2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGSTNTYHRLLAQGIGRRDGIGRKKIHSRDKIAPLSYCSCFLWDYKLSAFRFCSIPDHKHQIR MGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSPGNQSTTVPGSSSGPLQTHQHVDSSSGRENV SDLTLGPGNSPITRMNPASGALSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRL PRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLF CSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKG GFKAPITSEFRKSIKLTRYRSEKVTISYAEYIASRQHCFQNGTLHAPPLYNHYS hide sequence

Ensembl Acc Id:

ENSRNOP00000057790 ⟸ ENSRNOT00000061074

RefSeq Acc Id:	XP_038952805 ⟸ XM_039096877
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038952806 ⟸ XM_039096878
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000095073 ⟸ ENSRNOT00000094521

Ensembl Acc Id:

ENSRNOP00000099320 ⟸ ENSRNOT00000150322

Protein Domains

AMMECR1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V9S2-F1-model_v2	AlphaFold	G3V9S2	1-384	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700674

Promoter ID:

EPDNEW_R11198

Type:

single initiation site

Name:

Ammecr1l_1

Description:

AMMECR1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,540,648 - 24,540,708	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307915	AgrOrtholog
BioCyc Gene	G2FUF-8056	BioCyc
Ensembl Genes	ENSRNOG00000016250	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061074	ENTREZGENE
	ENSRNOT00000061074.4	UniProtKB/TrEMBL
	ENSRNOT00000094521	ENTREZGENE
	ENSRNOT00000094521.2	UniProtKB/TrEMBL
	ENSRNOT00000150322.1	UniProtKB/TrEMBL
Gene3D-CATH	Hypothetical protein ph0010, domain 1	UniProtKB/TrEMBL
InterPro	AMMECR1	UniProtKB/TrEMBL
	AMMECR1_dom_sf	UniProtKB/TrEMBL
	AMMECR1_domain	UniProtKB/TrEMBL
	AMMECR1_N	UniProtKB/TrEMBL
KEGG Report	rno:307526	UniProtKB/TrEMBL
NCBI Gene	307526	ENTREZGENE
PANTHER	AMMECR1-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR13016	UniProtKB/TrEMBL
Pfam	AMMECR1	UniProtKB/TrEMBL
PhenoGen	Ammecr1l	PhenoGen
PROSITE	AMMECR1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016250	RatGTEx
Superfamily-SCOP	SSF143447	UniProtKB/TrEMBL
UniProt	A0A8I6GL02	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L963_RAT	UniProtKB/TrEMBL
	A6J2N9	ENTREZGENE, UniProtKB/TrEMBL
	A6J2P1_RAT	UniProtKB/TrEMBL
	B4F7A8_RAT	UniProtKB/TrEMBL
	G3V9S2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Ammecr1l	AMMECR1 like	Ammecr1l	AMME chromosomal region gene 1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ammecr1l	AMME chromosomal region gene 1-like	RGD1307915_predicted	similar to hypothetical protein MGC32132 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307915_predicted	similar to hypothetical protein MGC32132 (predicted)	LOC307526_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307526_predicted	similar to hypothetical protein MGC32132 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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