Zbtb17 (zinc finger and BTB domain containing 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zbtb17 (zinc finger and BTB domain containing 17) Rattus norvegicus
Analyze
Symbol: Zbtb17
Name: zinc finger and BTB domain containing 17
RGD ID: 1307143
Description: Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; transcription cis-regulatory region binding activity; and transcription coactivator binding activity. Predicted to be involved in negative regulation of cell population proliferation; regulation of gene expression; and regulation of immune system process. Predicted to act upstream of with a negative effect on G1 to G0 transition. Predicted to act upstream of or within ectoderm development; gastrulation with mouth forming second; and positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of protein-DNA complex. Predicted to be active in nucleoplasm. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC313666; Zfp100; zinc finger and BTB domain-containing protein 17; zinc finger protein 100
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,036,482 - 159,057,580 (+)NCBIGRCr8
mRatBN7.25153,753,508 - 153,774,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,753,569 - 153,774,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,440,859 - 156,461,960 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,214,147 - 158,235,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,203,320 - 158,224,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,993,799 - 160,014,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,993,799 - 160,014,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,713,685 - 163,734,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,337,988 - 160,359,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,348,175 - 160,369,246 (+)NCBI
Celera5152,113,183 - 152,134,155 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9312026   PMID:11068878   PMID:12244100   PMID:12477932   PMID:14560010   PMID:18045875   PMID:19160485   PMID:24912190  


Genomics

Comparative Map Data
Zbtb17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,036,482 - 159,057,580 (+)NCBIGRCr8
mRatBN7.25153,753,508 - 153,774,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,753,569 - 153,774,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,440,859 - 156,461,960 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,214,147 - 158,235,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,203,320 - 158,224,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,993,799 - 160,014,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,993,799 - 160,014,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,713,685 - 163,734,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,337,988 - 160,359,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,348,175 - 160,369,246 (+)NCBI
Celera5152,113,183 - 152,134,155 (+)NCBICelera
Cytogenetic Map5q36NCBI
ZBTB17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,941,869 - 15,976,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,941,869 - 15,976,132 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,268,364 - 16,302,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,140,951 - 16,175,101 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,013,671 - 16,047,820NCBI
Celera114,748,238 - 14,782,515 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef114,787,372 - 14,821,661 (-)NCBIHuRef
CHM1_1116,066,899 - 16,101,159 (-)NCBICHM1_1
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBIT2T-CHM13v2.0
Zbtb17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,171,984 - 141,195,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,171,965 - 141,195,241 (+)EnsemblGRCm39 Ensembl
GRCm384141,444,673 - 141,467,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,444,654 - 141,467,930 (+)EnsemblGRCm38mm10GRCm38
MGSCv374141,000,588 - 141,023,852 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,716,760 - 140,739,305 (+)NCBIMGSCv36mm8
Celera4143,261,157 - 143,285,202 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.17NCBI
Zbtb17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555272,252,074 - 2,282,787 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555272,252,118 - 2,278,127 (+)NCBIChiLan1.0ChiLan1.0
ZBTB17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,944,784 - 210,977,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,193,373 - 210,226,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,080,880 - 15,113,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,074,005 - 16,106,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,074,005 - 16,106,700 (-)Ensemblpanpan1.1panPan2
ZBTB17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,652,015 - 81,682,647 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,652,157 - 81,682,660 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,188,685 - 78,220,088 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,297,860 - 82,329,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,297,873 - 82,329,761 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,051,015 - 79,083,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,069,989 - 80,101,528 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,136,103 - 81,167,412 (+)NCBIUU_Cfam_GSD_1.0
Zbtb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,712,259 - 37,738,912 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,537,043 - 3,563,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,535,351 - 3,563,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,107,427 - 75,144,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,108,728 - 75,144,103 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,324,794 - 116,358,600 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605419,851,110 - 19,885,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,144,878 - 2,174,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,144,555 - 2,174,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb17
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000014399
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat

Markers in Region
RH142253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25153,774,337 - 153,774,528 (+)MAPPERmRatBN7.2
Rnor_6.05160,014,624 - 160,014,814NCBIRnor6.0
Rnor_5.05163,734,440 - 163,734,630UniSTSRnor5.0
RGSC_v3.45160,358,789 - 160,358,979UniSTSRGSC3.4
Celera5152,133,884 - 152,134,074UniSTS
RH 3.4 Map14182.09UniSTS
Cytogenetic Map5q36UniSTS
AW536047  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25153,763,015 - 153,763,170 (+)MAPPERmRatBN7.2
Rnor_6.05160,003,302 - 160,003,456NCBIRnor6.0
Rnor_5.05163,723,118 - 163,723,272UniSTSRnor5.0
RGSC_v3.45160,347,467 - 160,347,621UniSTSRGSC3.4
Celera5152,122,581 - 152,122,735UniSTS
RH 3.4 Map51052.3UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 22 14 19 14 3 73 28 41 11
Low 8 35 27 27 8 8 1 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014399   ⟹   ENSRNOP00000014399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5153,753,569 - 153,774,609 (+)Ensembl
Rnor_6.0 Ensembl5159,993,799 - 160,014,895 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088644   ⟹   ENSRNOP00000071596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5160,009,422 - 160,014,788 (+)Ensembl
RefSeq Acc Id: NM_001012105   ⟹   NP_001012105
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,482 - 159,057,580 (+)NCBI
mRatBN7.25153,753,508 - 153,774,609 (+)NCBI
Rnor_6.05159,993,799 - 160,014,895 (+)NCBI
Rnor_5.05163,713,685 - 163,734,715 (+)NCBI
RGSC_v3.45160,337,988 - 160,359,060 (+)RGD
Celera5152,113,183 - 152,134,155 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239303   ⟹   XP_006239365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
mRatBN7.25153,753,513 - 153,774,613 (+)NCBI
Rnor_6.05159,993,804 - 160,014,899 (+)NCBI
Rnor_5.05163,713,685 - 163,734,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110079   ⟹   XP_038966007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
mRatBN7.25153,753,513 - 153,774,613 (+)NCBI
RefSeq Acc Id: XM_039110080   ⟹   XP_038966008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
mRatBN7.25153,753,521 - 153,774,613 (+)NCBI
RefSeq Acc Id: XM_063287815   ⟹   XP_063143885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
RefSeq Acc Id: XM_063287816   ⟹   XP_063143886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
RefSeq Acc Id: XM_063287817   ⟹   XP_063143887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
RefSeq Acc Id: XM_063287818   ⟹   XP_063143888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
RefSeq Acc Id: XM_063287819   ⟹   XP_063143889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,036,512 - 159,057,580 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012105   ⟸   NM_001012105
- UniProtKB: Q5XIU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239365   ⟸   XM_006239303
- Peptide Label: isoform X2
- UniProtKB: A6ITU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014399   ⟸   ENSRNOT00000014399
RefSeq Acc Id: ENSRNOP00000071596   ⟸   ENSRNOT00000088644
RefSeq Acc Id: XP_038966007   ⟸   XM_039110079
- Peptide Label: isoform X1
- UniProtKB: F7FQA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966008   ⟸   XM_039110080
- Peptide Label: isoform X1
- UniProtKB: F7FQA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143885   ⟸   XM_063287815
- Peptide Label: isoform X1
- UniProtKB: F7FQA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143889   ⟸   XM_063287819
- Peptide Label: isoform X2
- UniProtKB: A6ITU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143886   ⟸   XM_063287816
- Peptide Label: isoform X2
- UniProtKB: A6ITU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143888   ⟸   XM_063287818
- Peptide Label: isoform X2
- UniProtKB: A6ITU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143887   ⟸   XM_063287817
- Peptide Label: isoform X2
- UniProtKB: A6ITU0 (UniProtKB/TrEMBL)
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIU3-F1-model_v2 AlphaFold Q5XIU3 1-801 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694227
Promoter ID:EPDNEW_R4751
Type:initiation region
Name:Zbtb17_1
Description:zinc finger and BTB domain containing 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05159,993,848 - 159,993,908EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307143 AgrOrtholog
BioCyc Gene G2FUF-39342 BioCyc
Ensembl Genes ENSRNOG00000010436 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014399.8 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113925 IMAGE-MGC_LOAD
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:313666 UniProtKB/TrEMBL
MGC_CLONE MGC:93950 IMAGE-MGC_LOAD
NCBI Gene 313666 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 60-LIKE UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 711 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb17 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010436 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A6ITU0 ENTREZGENE, UniProtKB/TrEMBL
  F7FQA4 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIU3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zbtb17  zinc finger and BTB domain containing 17  Zfp100  zinc finger protein 100  Symbol and Name updated 1299863 APPROVED
2005-12-06 Zfp100  zinc finger protein 100  Zfp100_predicted  zinc finger protein 100 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zfp100_predicted  zinc finger protein 100 (predicted)      Symbol and Name status set to approved 70820 APPROVED