Rbmxl1 (Rbmx like 1) - Rat Genome Database

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Pathways
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Gene: Rbmxl1 (Rbmx like 1) Rattus norvegicus
Analyze
Symbol: Rbmxl1
Name: Rbmx like 1
RGD ID: 1306751
Description: Enables RNA binding activity. Involved in protein-containing complex assembly and regulation of mRNA splicing, via spliceosome. Part of supraspliceosomal complex. Orthologous to human RBMXL1 (RBMX like 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heterogeneous nuclear ribonucleoprotein G; heterogeneous nuclear ribonucleoprotein G retrogene-like; hnRNP G; LOC307779; Rbmx; Rbmxrt; Rbmxrtl; RNA binding motif protein, X chromosome retrogene; RNA binding motif protein, X chromosome retrogene-like; RNA binding motif protein, X-linked-like 1; RNA-binding motif protein, X chromosome; RNA-binding motif protein, X chromosome retrogene; RNA-binding motif protein, X chromosome retrogene-like
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,312,176 - 46,315,802 (+)NCBIGRCr8
mRatBN7.21929,407,902 - 29,411,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1936,255,618 - 36,259,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,909,490 - 36,913,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01939,158,601 - 39,162,176 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01933,081,473 - 33,084,988 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,973,668 - 43,977,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,310,317 - 31,313,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11931,314,771 - 31,318,720 (+)NCBI
Celera1928,906,579 - 28,910,137 (+)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA. Heinrich B, etal., J Biol Chem. 2009 May 22;284(21):14303-15. Epub 2009 Mar 12.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors. Wang J, etal., J Neurochem. 2004 Mar;88(5):1078-90.
Additional References at PubMed
PMID:10716735   PMID:17188681   PMID:19403048   PMID:24625528   PMID:25931508   PMID:35352799  


Genomics

Comparative Map Data
Rbmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,312,176 - 46,315,802 (+)NCBIGRCr8
mRatBN7.21929,407,902 - 29,411,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1936,255,618 - 36,259,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,909,490 - 36,913,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01939,158,601 - 39,162,176 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01933,081,473 - 33,084,988 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,973,668 - 43,977,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,310,317 - 31,313,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11931,314,771 - 31,318,720 (+)NCBI
Celera1928,906,579 - 28,910,137 (+)NCBICelera
Cytogenetic Map19q11NCBI
RBMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38188,979,456 - 88,992,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl188,979,456 - 88,992,960 (-)EnsemblGRCh38hg38GRCh38
GRCh37189,445,139 - 89,458,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,218,710 - 89,231,104 (-)NCBINCBI36Build 36hg18NCBI36
Celera187,690,929 - 87,704,434 (-)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef187,562,493 - 87,576,019 (-)NCBIHuRef
CHM1_1189,560,200 - 89,573,685 (-)NCBICHM1_1
T2T-CHM13v2.0188,822,848 - 88,836,026 (-)NCBIT2T-CHM13v2.0
Rbmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,231,898 - 79,235,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,231,898 - 79,235,527 (-)EnsemblGRCm39 Ensembl
GRCm38878,505,269 - 78,508,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,505,269 - 78,508,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,029,168 - 81,032,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36881,401,341 - 81,405,000 (-)NCBIMGSCv36mm8
Celera882,781,894 - 82,785,553 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.04NCBI
RBMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,985,862 - 137,990,552 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,141,657 - 137,146,346 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0191,695,452 - 91,708,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RBMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12044,416,179 - 44,428,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603373,478,836 - 73,491,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rbmxl1
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:16
Count of miRNA genes:14
Interacting mature miRNAs:16
Transcripts:ENSRNOT00000016184
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat

Markers in Region
D19Got116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,406,060 - 29,406,201 (+)MAPPERmRatBN7.2
Rnor_6.01933,079,592 - 33,079,732NCBIRnor6.0
Rnor_5.01943,971,787 - 43,971,927UniSTSRnor5.0
RGSC_v3.41931,308,436 - 31,308,576UniSTSRGSC3.4
Celera1928,904,698 - 28,904,838UniSTS
Cytogenetic Map19q11UniSTS
UniSTS:479241  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,410,712 - 29,411,252 (+)MAPPERmRatBN7.2
Rnor_6.01933,084,184 - 33,084,723NCBIRnor6.0
Rnor_5.01943,976,379 - 43,976,918UniSTSRnor5.0
RGSC_v3.41931,313,088 - 31,313,627UniSTSRGSC3.4
Celera1928,909,333 - 28,909,872UniSTS
Cytogenetic Map19q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 36 28 17 28 68 27 38 9
Low 15 21 13 2 13 8 11 6 8 3 2 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016184   ⟹   ENSRNOP00000016184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098054   ⟹   ENSRNOP00000079505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)Ensembl
RefSeq Acc Id: NM_001107420   ⟹   NP_001100890
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,312,225 - 46,315,800 (+)NCBI
mRatBN7.21929,407,942 - 29,411,517 (+)NCBI
Rnor_6.01933,081,473 - 33,084,988 (+)NCBI
Rnor_5.01943,973,668 - 43,977,183 (+)NCBI
RGSC_v3.41931,310,317 - 31,313,892 (+)RGD
Celera1928,906,579 - 28,910,137 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097729   ⟹   XP_038953657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,312,176 - 46,315,802 (+)NCBI
mRatBN7.21929,407,902 - 29,411,519 (+)NCBI
RefSeq Acc Id: XM_063278022   ⟹   XP_063134092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,313,074 - 46,315,802 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953657 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134092 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079505
  ENSRNOP00000079505.1
  ENSRNOP00000094400.1
GenBank Protein P84586 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001100890   ⟸   NM_001107420
- UniProtKB: P84586 (UniProtKB/Swiss-Prot),   A6IYJ5 (UniProtKB/TrEMBL),   A0A8I6AKQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016184   ⟸   ENSRNOT00000016184
RefSeq Acc Id: XP_038953657   ⟸   XM_039097729
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZN66 (UniProtKB/TrEMBL),   A0A8I6AKQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079505   ⟸   ENSRNOT00000098054
RefSeq Acc Id: XP_063134092   ⟸   XM_063278022
- Peptide Label: isoform X2
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P84586-F1-model_v2 AlphaFold P84586 1-388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306751 AgrOrtholog
BioCyc Gene G2FUF-5929 BioCyc
Ensembl Genes ENSRNOG00000000866 UniProtKB/TrEMBL
  ENSRNOG00000012138 Ensembl
  ENSRNOG00000062375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000098054.1 UniProtKB/TrEMBL
  ENSRNOT00000101124.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM1CTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:307779 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 307779 ENTREZGENE
PANTHER RNA BINDING MOTIF PROTEIN, X-LINKED-LIKE-1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING MOTIF PROTEIN, X CHROMOSOME UniProtKB/TrEMBL
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RBM1CTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbmxl1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000866 RatGTEx
  ENSRNOG00000012138 RatGTEx
  ENSRNOG00000062375 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZN66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKQ4 ENTREZGENE, UniProtKB/TrEMBL
  A6IYJ5 ENTREZGENE, UniProtKB/TrEMBL
  P84586 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-06 Rbmxl1  Rbmx like 1  Rbmxl1  RBMX like 1  Name changed 629549 APPROVED
2018-05-04 Rbmxl1  RBMX like 1  Rbmxl1  RNA binding motif protein, X-linked-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-19 Rbmxl1  RNA binding motif protein, X-linked-like 1  Rbmxrtl  RNA binding motif protein, X chromosome retrogene-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-05 Rbmxrtl  RNA binding motif protein, X chromosome retrogene-like  Rbmxrt_predicted  RNA binding motif protein, X chromosome retrogene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Rbmxrt_predicted  RNA binding motif protein, X chromosome retrogene (predicted)      Symbol and Name status set to approved 70820 APPROVED