Tcas7 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Tcas7 (Tongue tumor susceptibility QTL 7) Rattus norvegicus

Symbol: Tcas7
Name: Tongue tumor susceptibility QTL 7
RGD ID: 1549835
Also known as: Tts7; Tscc1
Trait: tongue integrity trait   (VT:0010553)    
Measurement Type: squamous cell carcinoma of the head and neck tumor number   (CMO:0001876)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21924,817,978 - 39,654,489RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01924,455,726 - 43,907,843RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01935,433,730 - 54,715,514RGDRnor5.0
RGSC_v3.41926,536,747 - 41,612,881RGDRGSC3.4
RGSC_v3.11926,541,573 - 41,617,762RGD
Cross Type: Not Available
Strains Crossed: WF.DA-(D19Mit1-D19Mit6)/Kop 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method
necropsy  (IDA)

Vertebrate Trait

Rat Strain

References

References - curated
1. Hirano M, etal., Cancer Lett 2005 May 2;.
Related QTLs

Related QTL Description Reference
Tcas1 sub_region RGD:1358147


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2503Nqo1NAD(P)H quinone dehydrogenase 1193529563335310528Rat
3094Nr3c2nuclear receptor subfamily 3, group C, member 2193071564831059885Rat
2068Agrpagouti related neuropeptide193344799233523068Rat
2535Ednraendothelin receptor type A193023354030303727Rat
2825Hphaptoglobin193753962637544178Rat
69279Cdh1cadherin 1193449237134561775Rat
619785Ap1g1adaptor related protein complex 1 subunit gamma 1193774466637831131Rat
69345Glg1golgi glycoprotein 1193912489239224178Rat
2835Hsd11b2hydroxysteroid 11-beta dehydrogenase 2193339765633402899Rat
3030Smad1SMAD family member 1192851313028573665Rat
68413St3gal2ST3 beta-galactoside alpha-2,3-sialyltransferase 2193888885138939874Rat
3687Slc12a4solute carrier family 12 member 4193383841833860369Rat
2444Ctrb1chymotrypsinogen B1193965293139657666Rat
3820Tattyrosine aminotransferase193794715337957717Rat
620473Slc9a5solute carrier family 9 member A5193322548133246913Rat
2887Il15interleukin 15192564001325706818Rat
631410Vac14VAC14 component of PIKFYVE complex193859056938691911Rat
708558Nol3nucleolar protein 3193315406133158250Rat
620075Pou4f2POU class 4 homeobox 2192948668629490327Rat
620981Calb2calbindin 2193811443538141438Rat
2993Lcatlecithin cholesterol acyltransferase193383474833838214Rat
68352Dhodhdihydroorotate dehydrogenase (quinone)193755185837573327Rat
620493Cbfbcore-binding factor subunit beta193304916233092752Rat
621677Pmfbp1polyamine modulated factor 1 binding protein 1193744343237507880Rat
621089Cdh3cadherin 3193439359634444084Rat
628810Vps4avacuolar protein sorting 4 homolog A193493499934948267Rat
621313TraddTNFRSF1A-associated via death domain193313614833142714Rat
1303136Ddx19aDEAD-box helicase 19A193894249738962853Rat
1303273Pard6apar-6 family cell polarity regulator alpha193358958333591900Rat
620069Nip7nucleolar pre-rRNA processing protein NIP7193496255734964700Rat
1304832Aars1alanyl-tRNA synthetase 1193899913039021152Rat
1304869Prmt7protein arginine methyltransferase 7193411072434161531Rat
621551Cyb5bcytochrome b5 type B193506287135096741Rat
620470Inpp4binositol polyphosphate-4-phosphatase type II B192592018926670085Rat
708394Slc7a6ossolute carrier family 7, member 6 opposite strand193410197834110666Rat
619754Smpd3sphingomyelin phosphodiesterase 3193416233734245786Rat
628656Has3hyaluronan synthase 3193476842134782170Rat
1304734Elmo3engulfment and cell motility 3193318195233186399Rat
1304648Pskh1protein serine kinase H1193379491933827040Rat
1304572Rnf150ring finger protein 150192500697825229273Rat
1307418Ces4acarboxylesterase 4A193301173133030119Rat
1307510Zfp330zinc finger protein 330192531365525324958Rat
1305127Txnl4bthioredoxin-like 4B193753015737539827Rat
621098Phaf1phagosome assembly factor 1193310145333138920Rat
1307074Cog8component of oligomeric golgi complex 8193495162534962377Rat
1305746Dpep2dipeptidase 2193388355733896487Rat
621344CtcfCCCTC-binding factor193352172633571124Rat
1307000Fcskfucose kinase193884913038874497Rat
1306751Rbmxl1RBMX like 1192940790229411519Rat
1306894Chtf8chromosome transmission fidelity factor 8193478200534792306Rat
1306902Psmd7proteasome 26S subunit, non-ATPase 7193549431735501605Rat
1305061Tppp3tubulin polymerization-promoting protein family member 3193334589733349610Rat
735222Nob1NIN1 (RPN12) binding protein 1 homolog193532280335335354Rat
1307357Enkd1enkurin domain containing 1193359207433596552Rat
1307772Ripor1RHO family interacting cell polarization regulator 1193347775033506424Rat
1307197Zfp612zinc finger protein 612193805395338071196Rat
1307428Psmb10proteasome 20S subunit beta 10193383095833833442Rat
1303118Lrrc36leucine rich repeat containing 36193329207433342426Rat
1305260Tmed6transmembrane p24 trafficking protein 6193496681334972900Rat
1307799Ist1IST1 factor associated with ESCRT-III193764884037671019Rat
621501Ctrlchymotrypsin-like193382727933829129Rat
1305606Otud4OTU deubiquitinase 4192823671328279815Rat
1305612Dus2dihydrouridine synthase 2193390651733954922Rat
1305035Mmaametabolism of cobalamin associated A192861906028649319Rat
1311085Gab1GRB2-associated binding protein 1192713126227239236Rat
1308936Anapc10anaphase promoting complex subunit 10192815229928205552Rat
1310881Terf2telomeric repeat binding factor 2193497696335005813Rat
1308107Ldhdlactate dehydrogenase D193957362139595575Rat
1308307Pdprpyruvate dehydrogenase phosphatase regulatory subunit193906522639109695Rat
1309142Nfat5nuclear factor of activated T-cells 5193519973735286675Rat
1310798Chst4carbohydrate sulfotransferase 4193799347138002123Rat
1309731Mtss2MTSS I-BAR domain containing 2193869279338714575Rat
1308358Ces2gcarboxylesterase 2G193294674832954337Rat
1310855Esrp2epithelial splicing regulatory protein 2193403455934041726Rat
1359213Nutf2nuclear transport factor 2193375231933773595Rat
1311974Usp38ubiquitin specific peptidase 38192700604627037449Rat
1311976Ddx28DEAD-box helicase 28193390979933911729Rat
1310345Dhx38DEAH-box helicase 38193751289137530140Rat
1310347Fa2hfatty acid 2-hydroxylase193931290439364153Rat
727852Tmem184ctransmembrane protein 184C193034518330361275Rat
1310808Hsf4heat shock transcription factor 4193314775533153479Rat
1311341Utp4UTP4 small subunit processome component193479096234820558Rat
1310170B3gnt9UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9193312974033134048Rat
1311636Sf3b3splicing factor 3b, subunit 3193878274938820271Rat
1309383Cenptcentromere protein T193373468433741159Rat
1305243Rfwd3ring finger and WD repeat domain 3193923588339268536Rat
1308221Tbc1d9TBC1 domain family member 9192484216624951383Rat
1309394Cmtr2cap methyltransferase 2193819071838197549Rat
1310091Wwp2WW domain containing E3 ubiquitin protein ligase 2193534682635471251Rat
1311587Ranbp10RAN binding protein 10193365604633716864Rat
1308692Nfatc3nuclear factor of activated T-cells 3193396064334035150Rat
1305301Abce1ATP binding cassette subfamily E member 1192820556628230489Rat
1309832Exosc6exosome component 6193902130839023535Rat
1309193Slc7a6solute carrier family 7 member 6193407347234100268Rat
1308832Smarca5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5192727191827304594Rat
1305484Dpep3dipeptidase 3193386822933876609Rat
1310268Thap11THAP domain containing 11193374697733748794Rat
1306674Zfp821zinc finger protein 821193767993737698831Rat
1310549Cog4component of oligomeric golgi complex 4193882047838854803Rat
1306157Prmt9protein arginine methyltransferase 9193037634230414491Rat
1306159Atp6v0d1ATPase H+ transporting V0 subunit D1193340335233447357Rat
1562857Phlpp2PH domain and leucine rich repeat protein phosphatase 2193783512537901804Rat
1562701Frem3FRAS1 related extracellular matrix 3192730846927366771Rat
1562056Marveld3MARVEL domain containing 3193790872737923420Rat
1562009Edc4enhancer of mRNA decapping 4193377406233786054Rat
1561806LOC498933LOC498933192866905928704512Rat
1565053AcdACD, shelterin complex subunit and telomerase recruitment factor193358673933589481Rat
1561937Lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated192909825429112858Rat
1561415RGD1561415RGD1561415193359659133598703Rat
1565341Tsnaxip1translin-associated factor X interacting protein 1193371683433734824Rat
1559841Tango6transport and golgi organization 6 homolog193456958834757362Rat
1562390Carmil2capping protein regulator and myosin 1 linker 2193357125533586783Rat
1566420Fbxl8F-box and leucine-rich repeat protein 8193314265333147268Rat
1564100RGD1564100similar to RASD family, member 2193292245832923087Rat
1560889Ces2hcarboxylesterase 2H193297424232988842Rat
1302982Pla2g15phospholipase A2, group XV193405068534068070Rat
1311132Exoc3l1exocyst complex component 3-like 1193316683633174371Rat
1563077Zfp90zinc finger protein 90193432198034333195Rat
1560620Zfp827zinc finger protein 827192872056828887381Rat
1560268Zfhx3zinc finger homeobox 3193625719636886104Rat
1310790Plekhg4pleckstrin homology and RhoGEF domain containing G4193325178833266490Rat
1311198Gfod2glucose-fructose oxidoreductase domain containing 2193359968933647060Rat
1562254HydinHydin, axonemal central pair apparatus protein193823699638583271Rat
1587307LOC364984hypothetical pseudogene 2 on chromosome 19q11192541230925413479Rat
1585272MGC116202LOC688736193315805333166784Rat
1583003LOC688904similar to 60S ribosomal protein L35192712109727121489Rat
1587305LOC364998similar to ribosomal protein L10a193512961135130307Rat
1582894Pdfpeptide deformylase (mitochondrial)193494940834951621Rat
1565049Zfp1zinc finger protein 1193959949739633490Rat
1561326Kctd19potassium channel tetramerization domain containing 19193325986933292011Rat
1559899Clec18aC-type lectin domain family 18, member A193903849839053425Rat
1564108HhipHedgehog-interacting protein192786368427952528Rat
1561851Slc25a36l1solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1193294152332943368Rat
1560953Tmem208transmembrane protein 208193320358733206287Rat
1582935Gypaglycophorin A192745031127465940Rat
1565102RGD1565102similar to 40S ribosomal protein S15 (RIG protein)192664190526650112Rat
1564388Slc10a7solute carrier family 10, member 7192918314329407470Rat
1587348LOC307783similar to TGF beta-inducible nuclear protein 1 (L-name-related protein 42) (LNR42)193003515830035929Rat
1589775Zdhhc1zinc finger, DHHC-type containing 1193335053333375717Rat
1589776Fhod1formin homology 2 domain containing 1193320649233225448Rat
1589777Ttc29tetratricopeptide repeat domain 29192953170729750635Rat
1592274LOC689488similar to AP-3 complex subunit sigma-1 (Adapter-related protein complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin)192981927629820542Rat
1593150Lrrc29leucine rich repeat containing 29193318171333203583Rat
1592195Znrf1zinc and ring finger 1193949688639581600Rat
1588826Rps27a-ps6ribosomal protein S27a, pseudogene 6193091627930916833Rat
1586038Il34interleukin 34193871499038782749Rat
1589885LOC689693similar to myosin light chain 1 slow a193282713532827751Rat
1589916LOC689662hypothetical protein LOC689662193199233732204030Rat
1588859Arhgap10Rho GTPase activating protein 10193044857230710315Rat
1583591LOC679899similar to 40S ribosomal protein S20193551099135511375Rat
1590923LOC291871similar to heat shock protein 1, beta193243005232433227Rat
1585295LOC688712similar to ribosomal protein L22 like 1192542082225421388Rat
1588734Ces3acarboxylesterase 3a193299238633000562Rat
1592246LOC690718similar to 40S ribosomal protein S20193905954639060014Rat
1597608LOC686476similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (38 kDa BFA-dependent ADP-ribosylation substrate) (BARS-38)192835548328356270Rat
1592213Wdr59WD repeat domain 59193941643239483773Rat
1592221Mlklmixed lineage kinase domain like pseudokinase193927812339304555Rat
1592340Sntb2syntrophin, beta 2193483165734922325Rat
1593382Ddx19bDEAD-box helicase 19B193896821538998907Rat
1591046Eif5b-ps1eukaryotic translation initiation factor 5B, pseudogene 1193538789935392006Rat
2301010Nrn1lneuritin 1-like193378641933787879Rat
2322129E2f4E2F transcription factor 4193317439633181806Rat
2322909LOC100360036mitochondrial ribosomal protein S36-like192849490828495203Rat
2321738LOC100360619ribosomal protein L28-like193436727634367670Rat
2322604LOC100363645hypothetical LOC100363645193212209332123262Rat
2321884LOC100360573ribosomal protein S12-like193434391434344569Rat
2324490Pkd1l3polycystin 1 like 3, transient receptor potential channel interacting193758556437650083Rat
2325351Mir140microRNA 140193546557735465675Rat
2325404Mir328microRNA 328193318476633184849Rat
6493594LOC100911357uncharacterized LOC100911357193350745433523068Rat
6498598Tle7TLE family member 7193807268238084942Rat
6495903LOC100910922cytosolic purine 5'-nucleotidase-like192841423828424767Rat
7489044Mir6318microRNA 6318193318419233184300Rat
7614959LOC102548129acylcarnitine hydrolase-like193296512332970188Rat
7610034LOC102552779uncharacterized LOC102552779193028704930345197Rat
7610401LOC102553276uncharacterized LOC102553276193145524731487135Rat
7592245LOC102553877uncharacterized LOC102553877193808955738096725Rat
7578796LOC102549584uncharacterized LOC102549584192805103528075585Rat
7549007LOC102549652uncharacterized LOC102549652192837776228385051Rat
7564574LOC102556082heterogeneous nuclear ribonucleoprotein C-like 1-like193902392439030150Rat
7707469LOC102550010uncharacterized LOC102550010192865588228704532Rat
7690199LOC102554553uncharacterized LOC102554553192495274524958115Rat
7719249LOC102554624uncharacterized LOC102554624193771150537725107Rat
7700714LOC10255066860S ribosomal protein L21-like192945683829457305Rat
7709399LOC102553183uncharacterized LOC102553183193662425736632119Rat
9101037LOC103694327uncharacterized LOC103694327193646357736465740Rat
9145556LOC103694314SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like192612829226131416Rat
9151310LOC103694973uncharacterized LOC103694973192761240027629804Rat
9319286LOC103694328alanine and glycine-rich protein-like193770034137711524Rat
9299867LOC103694321uncharacterized LOC103694321193105760631130156Rat
9685095Mir3084amicroRNA 3084a193880916438809230Rat
11355708Trnag-gcc9transfer RNA glycine (anticodon GCC) 9193860363838603708Rat
11465967LOC10834897940S ribosomal protein S18 pseudogene193816718538167779Rat
11468429LOC108348925small nuclear ribonucleoprotein G pseudogene192821034428212718Rat
11474432LOC108348974uncharacterized LOC108348974192528969425301168Rat
11358650LOC108348918uncharacterized LOC108348918192490969324925713Rat
11444644LOC108353195uncharacterized LOC108353195193669622336701645Rat
11435694LOC108353192uncharacterized LOC108353192193231488632561842Rat
11428350LOC108348923uncharacterized LOC108348923192542649525436109Rat
11450965LOC108348882histone H3.3-like193291050832922382Rat
11366551LOC108348983membrane-associated progesterone receptor component 1 pseudogene193051171630512578Rat
11452043Trnag-gcc11transfer RNA glycine (anticodon GCC) 11193902789839027968Rat
11442314Trnah-gug11transfer RNA histidine (anticodon GUG) 11193198233331982404Rat
11402022LOC10834888140S ribosomal protein S25 pseudogene192976874529769406Rat
11501100LOC10834893760S ribosomal protein L29 pseudogene193875426538754899Rat
11496770LOC10834893660S ribosomal protein L7a pseudogene193880603938806845Rat
11514155LOC108348930uncharacterized LOC108348930193368320033686829Rat
11490898Trnag-gcc10transfer RNA glycine (anticodon GCC) 10193860287438602944Rat
21079726DerpcDERPC proline and glycine rich nuclear protein193478223434792306Rat
41322043LOC120098577uncharacterized LOC120098577192892691528940920Rat
41085875LOC120098626uncharacterized LOC120098626193882518438829056Rat
41112025LOC120098604uncharacterized LOC120098604192714050927149999Rat
41167744LOC120098738U4 spliceosomal RNA192914193029142070Rat
41281721LOC120098617small nuclear ribonucleoprotein E-like193345391033454760Rat
41139013LOC120098631transcription factor BTF3-like193568002035680809Rat
41114231LOC120098708small nucleolar RNA SNORD111193881248638812574Rat
41146791LOC120098612uncharacterized LOC120098612193336831333375959Rat
41391977LOC120098750U6 spliceosomal RNA193925961939259722Rat
41343011LOC120098687small nucleolar RNA SNORA17193016270530162832Rat
41213568LOC120098611uncharacterized LOC120098611193314723233149323Rat
41265748LOC120098614uncharacterized LOC120098614193403964934046460Rat
41394269LOC120098734small nucleolar RNA U3193288980032889874Rat
41345086NEWGENE_40938314transfer RNA serine (anticodon AGA)193778142737781501Rat
41194492LOC120098746U6 spliceosomal RNA193303935833039455Rat
41160097LOC12009862960S ribosomal protein L29-like193947078839471394Rat
41160673Reeld1reeler domain containing 1192914189829159970Rat
41291857LOC120098658small nuclear ribonucleoprotein G-like193363696533637340Rat
41374766LOC120098630uncharacterized LOC120098630193948357039484117Rat
41072776LOC120098703small nucleolar RNA SNORA17193082363230823744Rat
41130166LOC120098640uncharacterized LOC120098640193384514433848140Rat
41402383LOC120098729U2 spliceosomal RNA192642919226429345Rat
41403740LOC120098694small nucleolar RNA SNORA17193192771031927841Rat
41110705LOC120098643uncharacterized LOC120098643193611607736124602Rat
40944694LOC12009856660S ribosomal protein L28-like192931088529316984Rat
40972128LOC120098498uncharacterized LOC120098498193782042037835029Rat
41012179LOC120098706small nucleolar RNA SNORD71193780686937806952Rat
40973828LOC120098602uncharacterized LOC120098602192717508827178216Rat
41014607LOC120098554uncharacterized LOC120098554192519944825209488Rat
40927555LOC120098669U6 spliceosomal RNA193491212134912222Rat
40928770LOC120098657dynein light chain Tctex-type 3-like193264733832647777Rat
40931516LOC120098709small nucleolar RNA SNORD111193881587438815949Rat
40959505LOC120098688small nucleolar RNA SNORA17193303843133038569Rat
40987892LOC12009863960S ribosomal protein L27-like193307557633076637Rat
40991131LOC120098633uncharacterized LOC120098633192821608428220114Rat
40966524LOC120098594uncharacterized LOC120098594193019709130198483Rat
41316782LOC120098487uncharacterized LOC120098487192530601225313603Rat
41051304LOC120098689small nucleolar RNA SNORA17193937922039379349Rat
41298336LOC120098483uncharacterized LOC120098483193707533937206890Rat
41314690LOC120098575RNA-binding protein 8A-like193547283735479346Rat
41224249NEWGENE_6576114transfer RNA threonine (anticodon AGU)193657448536574557Rat
41299976LOC120098624uncharacterized LOC120098624193806961538071861Rat
41334234LOC120098516uncharacterized LOC120098516193599280135996408Rat
41303783LOC120098527uncharacterized LOC120098527193691368636926337Rat
41237132LOC120098673U7 small nuclear RNA193004933630049401Rat
41067308LOC120098628uncharacterized LOC120098628193900001239001196Rat
41022843LOC120098735small nucleolar RNA U3193255065132550858Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10418D19Mit6144193965437739654489Ratregion
10726D19Arb2352193754440137544765Ratregion
10727D19Wox9157193754064437540803Ratregion
34033D19Mit5109193306179233061905Ratregion
11389D19Mgh2131193795578937955932Ratregion
11390D19Wox4194193794720737947399Ratregion
11472D19Wox8111192481797824818103Ratregion
33602D19Mit10183193108194131082124Ratregion
33741D15Mit4201192605267726052794Ratregion
36384D19Mgh11111193673968236739793Ratregion
35376D19Rat12178192570467125704884Ratregion
35415D19Rat22129193467442834674557Ratregion
37102D19Rat10236193819779138198023Ratregion
37758D19Rat33207193536868135368908Ratregion
34904D19Rat23172193445536834455540Ratregion
35128D19Rat24166193651145036511619Ratregion
35881D19Rat11128192968965629689776Ratregion
39670D19Rat9184193601893136019027Ratregion
39854D19Rat69195193934887039349071Ratregion
38110D19Rat35206193815251238152724Ratregion
38242D19Rat41161192629651126296662Ratregion
38298D19Rat48179192702113127021310Ratregion
38394D19Rat53121193297346832973603Ratregion
38808D19Rat54203192515071125150917Ratregion
39018D19Rat29206192932249029322676Ratregion
39212D19Rat46143193452169434521833Ratregion
39300D19Rat40200193010343730103633Ratregion
39394D19Rat92201193281101932811220Ratregion
41174D19Rat71232193813009538130307Ratregion
41280D19Rat72147193701207837012217Ratregion
41342D19Rat70160193905225639052416Ratregion
42428D19Rat124210192905967329059881Ratregion
42429D19Rat118243193458415834584401Ratregion
42430D19Rat117201193877799138778194Ratregion
41714D19Rat109126193006321930063337Ratregion
43131D19Rat120200192618261526182815Ratregion
43132D19Rat110227192735660227356819Ratregion
45606D19Got14168192843871428438882Ratregion
45607D19Got16158192849407628494234Ratregion
45609D19Got17157192849407628494234Ratregion
45610D19Got15156193046225130462407Ratregion
45611D19Got18132193177567731775809Ratregion
45615D19Got25136193330652933306665Ratregion
45618D19Got26146193459370834593854Ratregion
45619D19Got23158193464690334647061Ratregion
45620D19Got24249193420535934205608Ratregion
45621D19Got27238193513534735135584Ratregion
45622D19Got29164193568315235683316Ratregion
45623D19Got57225193420543634205661Ratregion
45624D19Got30152193640615636406310Ratregion
45625D19Got32259193714986237150121Ratregion
45626D19Got28255193627446536274720Ratregion
45627D19Wox6324193793716837937490Ratregion
45628D19Got31196193775666937756863Ratregion
60780D19Wox2114193827513238275246Ratregion
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5503722NUTF2_9060500193377202333772523Ratregion
5504566PMC305633P30193313659333137120Ratregion
5506092UniSTS:498356539193416451134165050Ratregion
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5506427UniSTS:479241540192941071229411252Ratregion
5506529E2F4_601796193318103033181826Ratregion
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5507027fk81g07.x1974192516846525169439Ratregion
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5500829STS-Z407031034192765877827659812Ratregion
5503532ATBF1_4388923193688098936881912Ratregion
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5501546WI-11812143192981938629819529Ratregion
5501934MARC_17823-17824:1024943874:1491193687074236871233Ratregion
5501928MARC_17527-17528:1016478546:11350193546679135468141Ratregion
5501956MARC_20750-20751:1025022208:1515193356965833570173Ratregion
5502425RH124805270193782803637828306Ratregion
Position Markers

Flank 1: (D19Wox8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21924,817,978 - 24,818,103 (-)MAPPER
Rnor_6.01924,455,726 - 24,455,850NCBI
Rnor_5.01935,433,730 - 35,433,854UniSTS
RGSC_v3.41926,536,747 - 26,536,872RGD
RGSC_v3.41926,536,748 - 26,536,872UniSTS
RGSC_v3.11926,541,573 - 26,541,698RGD
Celera1924,357,643 - 24,357,761UniSTS
Cytogenetic Map19p11-q11UniSTS
Flank 2: (D19Mit6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21939,654,377 - 39,654,489 (+)MAPPER
Rnor_6.01943,907,732 - 43,907,843NCBI
Rnor_5.01954,715,403 - 54,715,514UniSTS
RGSC_v3.41941,612,770 - 41,612,881UniSTS
RGSC_v3.11941,617,650 - 41,617,762RGD
RH 3.4 Map19489.9RGD
RH 3.4 Map19489.9UniSTS
RH 2.0 Map19550.3RGD
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Tcas7  Tongue tumor susceptibility QTL 7  Tts7    Symbol updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details QTL is significant for tongue tumor susceptibility as measured by number of cancers per rat, p<0.001; and diameter of largest carcinoma, p<0.05 1358147