Rbmxl1 (RNA binding motif protein, X-linked like-1)

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Gene: Rbmxl1 (RNA binding motif protein, X-linked like-1) Mus musculus

Analyze

Symbol:

Rbmxl1

Name:

RNA binding motif protein, X-linked like-1

RGD ID:

1315547

MGI Page

MGI

Description:

Exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Localizes to nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human RBMXL1 (RBMX like 1); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

heterogeneous nuclear ribonucleoprotein G; heterogeneous nuclear ribonucleoprotein G (hnRNP G); heterogeneous nuclear ribonucleoprotein G-like 1; Hn; hnRNP G; Hnrpg; MGC102184; Rbmx; Rbmxrt; RNA binding motif protein, X chromosome retrogene; RNA binding motif protein, X linked-like-1; RNA binding motif protein, X-linked-like-1; RNA-binding motif protein, X chromosome

RGD Orthologs

Human

Rat

Bonobo

Green Monkey

Alliance Genes

More Info

more info ...

Related Pseudogenes:

Gm7324

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	79,231,898 - 79,235,557 (-)	NCBI	GRCm39		mm39
GRCm38	8	78,505,269 - 78,508,928 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	78,505,269 - 78,508,898 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	81,029,168 - 81,032,827 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	81,401,341 - 81,405,000 (-)	NCBI			mm8
Celera	8	82,781,894 - 82,785,553 (-)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

aflatoxin B1 (ISO)

Aroclor 1254 (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

calcitriol (ISO)

carbon nanotube (EXP)

cyclosporin A (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (ISO)

folic acid (EXP)

gentamycin (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (EXP)

oxaliplatin (ISO)

paracetamol (EXP)

pentachlorophenol (EXP)

piperonyl butoxide (EXP)

sunitinib (ISO)

testosterone (ISO)

topotecan (ISO)

trimellitic anhydride (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

mRNA splice site selection (ISO)

negative regulation of mRNA splicing, via spliceosome (ISO)

positive regulation of mRNA splicing, via spliceosome (IBA,ISO)

positive regulation of transcription by RNA polymerase II (IDA,IMP)

protein homooligomerization (ISO)

regulation of alternative mRNA splicing, via spliceosome (ISO)

RNA splicing (IEA)

Cellular Component

nucleus (IDA)

spliceosomal complex (IBA)

supraspliceosomal complex (ISO)

Molecular Function

chromatin binding (IDA)

nucleic acid binding (IEA)

protein binding (IPI)

RNA binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IDA)

References

References - curated


1.	MGD data from the GO Consortium
2.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8617202	PMID:9457683	PMID:10349636	PMID:10391207	PMID:10512203	PMID:10716735	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12904583
PMID:15782199	PMID:15840001	PMID:16033648	PMID:16141072	PMID:16141073	PMID:16919269	PMID:17188681	PMID:18799693	PMID:19403048	PMID:19723774	PMID:19858291	PMID:21873635
PMID:23604909	PMID:24457600	PMID:28378742	PMID:30068389	PMID:30595499	PMID:31138677	PMID:32098917	PMID:32325033	PMID:32968282

Genomics

Comparative Map Data

Rbmxl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	79,231,898 - 79,235,557 (-)	NCBI	GRCm39		mm39
GRCm38	8	78,505,269 - 78,508,928 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	78,505,269 - 78,508,898 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	81,029,168 - 81,032,827 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	81,401,341 - 81,405,000 (-)	NCBI			mm8
Celera	8	82,781,894 - 82,785,553 (-)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

RBMXL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	88,979,456 - 88,992,960 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	88,979,456 - 88,992,629 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	89,445,139 - 89,458,643 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	89,218,710 - 89,231,104 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	1	87,690,929 - 87,704,434 (-)	NCBI
Cytogenetic Map	1	p22.2	NCBI
HuRef	1	87,562,493 - 87,576,019 (-)	NCBI		HuRef
CHM1_1	1	89,560,200 - 89,573,685 (-)	NCBI		CHM1_1

Rbmxl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	33,081,473 - 33,084,988 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	33,083,412 - 33,084,915 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	43,973,668 - 43,977,183 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	31,310,317 - 31,313,892 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	31,314,771 - 31,318,720 (+)	NCBI
Celera	19	28,906,579 - 28,910,137 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

RBMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Mhudiblu_PPA_v0	1	91,695,452 - 91,708,711 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RBMXL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	44,416,179 - 44,428,807 (+)	NCBI

Position Markers

Rbmxrt

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	8	C1	UniSTS
cM Map	8		UniSTS
cM Map	8	37.04	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	46
Interacting mature miRNAs:	47
Transcripts:	ENSMUST00000049245
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001252089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001358974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001358975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC101757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF031568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK041927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK177134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK180335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK180901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK182290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK184414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK207688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK214325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC011441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY262810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF437351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HB886963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HC944372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000049245 ⟹ ENSMUSP00000048153

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	78,505,269 - 78,508,898 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000211719 ⟹ ENSMUSP00000147384

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	78,505,277 - 78,508,879 (-)	Ensembl

RefSeq Acc Id:

NM_001252089 ⟹ NP_001239018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	79,231,898 - 79,235,557 (-)	NCBI
GRCm38	8	78,505,269 - 78,508,928 (-)	ENTREZGENE
Celera	8	82,781,894 - 82,785,553 (-)	ENTREZGENE
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTTGACGTTGCGCGGGGGGAGGGGAAGCCATTCGCGGCCTCTGGTTCTCGGCGGGAGCGGCGGC
GGCAGACGCGTGTGGCGACCGGCGCGGGAAAGCGGCTTCCTAGTTAGGGAAGCGTTAGCCCCGT
GGACCCAGCAGCTGTCACCGGTGAGCTACTTGGAAGGCCGATTTGGCGAGCTTGTAGGAGGAGC
TTGAGACCTTCACGTCCCCTCCGACTCTCAGCTGGAAGGCAAGATGGTTGAAGCAGATCGCCCA
GGAAAGCTCTTCATTGGTGGGCTTAATACAGAAACAAATGAGAAAGCCCTTGAAGCAGTATTTG
GCAAGTATGGACGAATAGTGGAAATACTTTTGATGAAAGACCGGGAAACCAACAAATCAAGAGG
ATTTGCTTTTGTTACCTTCGAAAGCCCAGCAGATGCTAAAGATGCAGCTAGAGATATGAATGGA
AAGTCCTTGGATGGAAAAGCCATCAAGGTGGAGCAAGCTACCAAACCATCTTTTGAAAGTGGCA
GGCGTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCCCAGAGGTCTTCGAGGAGGAAGTGG
AGGAACTAGGGGACCCCCTTCACGTGGAGGATACATGGATGATGGTGGTTATTCCATGAACTTT
AACATGAGTTCTTCCAGGGGACCACTTCCAGTAAAGAGAGGACCACCACCACGAAGCGGGGGTC
CCCCTCCTAAAAGATCAACACCTTCCGGACCAGTTCGAAGCAGCAGTGGAATGGGCGGAAGAAC
ACCAGTGTCCCGTGGAAGAGATAGCTACGGGGGTCCACCACGAAGGGAACCCCTGCCATCTCGC
AGAGATGTTTATTTGTCCCCAAGAGATGATGGATATTCTACAAAAGATAGCTATTCAAGCAGAG
ATTACCCAAGCTCCCGAGACACCAGAGATTATGCACCGCCACCAAGAGATTATACTTACCGTGA
TTACAGTCATTCCAGTTCCCGTGATGACTATCCATCAAGAGGCTACGGTGATAGAGATGGATAT
GGTCGGGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTT
ATGGAAACTCACGCAGTGCACCCCCTACACGAGGGCCACCACCATCTTATGGAGGAAGCAGTCG
CTATGATGATTACAGCAGCTCACGTGATGGCTACGGTGGAAGTCGAGACAGTTACTCAAGCAGC
AGAAGTGATCTCTACTCAAGTGGCCGTGATCGAGTTGGCAGACAAGAACGAGGGCTTCCCCCTT
CTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGAGGAGCGCCAAG
AGGAGGTGGCCGTGGAGGGAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAGAAACAA
ATAAGACTTTGGATCAAGGTCTCCATGCAAAGAAACAAAGGATGGAAAGTCTTCTGTCATAACT
ACCCAAGGACTACTAAAAGAAAAGTTGTGTTACCTTTTTAAATTTTCTGTTTTAAGTTTCCCTT
CATTTTTGTGTTCTTGTGAAGAAAAAGTAAAACATGATTAATTTTGATATTATGAATTGCTTTC
AACAAGCAAATGTTAAATGTGTAAGACTTGACTTGTACTAGTGTTGTAATTTTCCAAGTAAAAG
TGTTCCTAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001358974 ⟹ NP_001345903

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	79,231,898 - 79,235,197 (-)	NCBI
GRCm38	8	78,505,269 - 78,508,568 (-)	NCBI

Sequence:

show sequence

GGCTCCTCCCCACCCGTGTGCCGCGCGTGGGCGGGCGATTCCGGAGGCCGCGTGGTGCGGGCCT
TTGCCTGACCCCGAACCACTAAAGCAACAGGACAACTGAGAGGGGGCCAGGAACTCAGAACAAA
AGCAGTGAGGGCCAGATCCAGGGTGGAGGGTCTGATGTCCGCCCCCTCCCCCAACCCTCGGTTT
CTTGCATTGCATTTTGGCGAATCTATGACATAGTTTCACGAATGGTCTTCCGAGCATCAACCCT
TCCTCTTTATGCACCCAAAGAAAGAAAGGAACAAAGTATTGTGGGACATTTTGAAGCAGCCTGG
TATCAGCTACTTGAATAGTTTACTATGGAACGTAACGTTCGAAAGGGATTGTACCAGACTTTCA
TTCTGAATGCATTCAAAGCTTGAAAGAGACTCGGCGTGCAATTTGCTCTATTTAACTTTATCTT
GCTGACATGACTCGCTATCCAAAAACTAAGCTGCTTTAAGCAGTTGTGCTATCAGTTCTCAGTT
GCACAGCCCCCACTGCTCGGTAATTACGCATCAGGCAGCATGAAGAAAAGCTAATCTCAAGATA
AAAAGAACTTAATAGGGAGACATTAAACAATTTACCAGGCAAAAGAAGTACATGAAATGTGATA
AAGGCTTATTATAAGACAGTCACAAGGTGCTCGTGTGCAGTAGTCCTAGTGGCTTTTCTGTTCT
GTTCTGAGACCCAGCAGCTGTCACCGGTGAGCTACTTGGAAGGCCGATTTGGCGAGCTTGTAGG
AGGAGCTTGAGACCTTCACGTCCCCTCCGACTCTCAGCTGGAAGGCAAGATGGTTGAAGCAGAT
CGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACAGAAACAAATGAGAAAGCCCTTGAAGCAG
TATTTGGCAAGTATGGACGAATAGTGGAAATACTTTTGATGAAAGACCGGGAAACCAACAAATC
AAGAGGATTTGCTTTTGTTACCTTCGAAAGCCCAGCAGATGCTAAAGATGCAGCTAGAGATATG
AATGGAAAGTCCTTGGATGGAAAAGCCATCAAGGTGGAGCAAGCTACCAAACCATCTTTTGAAA
GTGGCAGGCGTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCCCAGAGGTCTTCGAGGAGG
AAGTGGAGGAACTAGGGGACCCCCTTCACGTGGAGGATACATGGATGATGGTGGTTATTCCATG
AACTTTAACATGAGTTCTTCCAGGGGACCACTTCCAGTAAAGAGAGGACCACCACCACGAAGCG
GGGGTCCCCCTCCTAAAAGATCAACACCTTCCGGACCAGTTCGAAGCAGCAGTGGAATGGGCGG
AAGAACACCAGTGTCCCGTGGAAGAGATAGCTACGGGGGTCCACCACGAAGGGAACCCCTGCCA
TCTCGCAGAGATGTTTATTTGTCCCCAAGAGATGATGGATATTCTACAAAAGATAGCTATTCAA
GCAGAGATTACCCAAGCTCCCGAGACACCAGAGATTATGCACCGCCACCAAGAGATTATACTTA
CCGTGATTACAGTCATTCCAGTTCCCGTGATGACTATCCATCAAGAGGCTACGGTGATAGAGAT
GGATATGGTCGGGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATG
AGAGTTATGGAAACTCACGCAGTGCACCCCCTACACGAGGGCCACCACCATCTTATGGAGGAAG
CAGTCGCTATGATGATTACAGCAGCTCACGTGATGGCTACGGTGGAAGTCGAGACAGTTACTCA
AGCAGCAGAAGTGATCTCTACTCAAGTGGCCGTGATCGAGTTGGCAGACAAGAACGAGGGCTTC
CCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGAGGAGC
GCCAAGAGGAGGTGGCCGTGGAGGGAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAG
AAACAAATAAGACTTTGGATCAAGGTCTCCATGCAAAGAAACAAAGGATGGAAAGTCTTCTGTC
ATAACTACCCAAGGACTACTAAAAGAAAAGTTGTGTTACCTTTTTAAATTTTCTGTTTTAAGTT
TCCCTTCATTTTTGTGTTCTTGTGAAGAAAAAGTAAAACATGATTAATTTTGATATTATGAATT
GCTTTCAACAAGCAAATGTTAAATGTGTAAGACTTGACTTGTACTAGTGTTGTAATTTTCCAAG
TAAAAGTGTTCCTAAAGGCAA

hide sequence

RefSeq Acc Id:

NM_001358975 ⟹ NP_001345904

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	79,231,898 - 79,235,197 (-)	NCBI
GRCm38	8	78,505,269 - 78,508,568 (-)	NCBI

Sequence:

show sequence

GGCTCCTCCCCACCCGTGTGCCGCGCGTGGGCGGGCGATTCCGGAGGCCGCGTGGTGCGGGCCT
TTGCCTGACCCCGAACCACTAAAGCAACAGGACAACTGAGAGGGGGCCAGGAACTCAGAACAAA
AGCAGTGAGGGCCAGATCCAGGGTGGAGGGTCTGATGTCCGCCCCCTCCCCCAACCCTCGGTTT
CTTGCATTGCATTTTGGCGAATCTATGACATAGTTTCACGAATGGTCTTCCGAGCATCAACCCT
TCCTCTTTATGCACCCAAAGAAAGAAAGGAACAAAGTATTGTGGGACATTTTGAAGCAGCCTGG
TATCAGCTACTTGAATAGTTTACTATGGAACGTAACGTTCGAAAGGGATTGTACCAGACTTTCA
TTCTGAATGCATTCAAAGCTTGAAAGAGACTCGGCGTGCAATTTGCTCTATTTAACTTTATCTT
GCTGACATGACTCGCTATCCAAAAACTAAGCTGCTTTAAGCAGTTGTGCTATCAGTTCTCAGTT
GCACAGCCCCCACTGCTCGGTAATTACGCATCAGGCAGCATGAAGAAAAGCTAATCTCAAGATA
AAAAGAACTTAATAGGGAGACATTAAACAATTTACCAGGCAAAAGAAGTACATGAAATGTGATA
AAGGCTTATTATAAGACAGTCACAAGACCCAGCAGCTGTCACCGGTGAGCTACTTGGAAGGCCG
ATTTGGCGAGCTTGTAGGAGGAGCTTGAGACCTTCACGTCCCCTCCGACTCTCAGCTGGAAGGC
AAGATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACAGAAACAAATG
AGAAAGCCCTTGAAGCAGTATTTGGCAAGTATGGACGAATAGTGGAAATACTTTTGATGAAAGA
CCGGGAAACCAACAAATCAAGAGGATTTGCTTTTGTTACCTTCGAAAGCCCAGCAGATGCTAAA
GATGCAGCTAGAGATATGAATGGAAAGTCCTTGGATGGAAAAGCCATCAAGGTGGAGCAAGCTA
CCAAACCATCTTTTGAAAGTGGCAGGCGTGGACCACCTCCACCTCCAAGAAGCAGGGGCCCTCC
CAGAGGTCTTCGAGGAGGAAGTGGAGGAACTAGGGGACCCCCTTCACGTGGAGGATACATGGAT
GATGGTGGTTATTCCATGAACTTTAACATGAGTTCTTCCAGGGGACCACTTCCAGTAAAGAGAG
GACCACCACCACGAAGCGGGGGTCCCCCTCCTAAAAGATCAACACCTTCCGGACCAGTTCGAAG
CAGCAGTGGAATGGGCGGAAGAACACCAGTGTCCCGTGGAAGAGATAGCTACGGGGGTCCACCA
CGAAGGGAACCCCTGCCATCTCGCAGAGATGTTTATTTGTCCCCAAGAGATGATGGATATTCTA
CAAAAGATAGCTATTCAAGCAGAGATTACCCAAGCTCCCGAGACACCAGAGATTATGCACCGCC
ACCAAGAGATTATACTTACCGTGATTACAGTCATTCCAGTTCCCGTGATGACTATCCATCAAGA
GGCTACGGTGATAGAGATGGATATGGTCGGGATCGTGACTATTCAGATCATCCAAGTGGAGGTT
CCTACAGAGATTCATATGAGAGTTATGGAAACTCACGCAGTGCACCCCCTACACGAGGGCCACC
ACCATCTTATGGAGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGATGGCTACGGTGGA
AGTCGAGACAGTTACTCAAGCAGCAGAAGTGATCTCTACTCAAGTGGCCGTGATCGAGTTGGCA
GACAAGAACGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAG
CAGTTCAAGCCGAGGAGCGCCAAGAGGAGGTGGCCGTGGAGGGAGCCGATCTGATAGAGGGGGA
GGCAGAAGCAGATATTAGAAACAAATAAGACTTTGGATCAAGGTCTCCATGCAAAGAAACAAAG
GATGGAAAGTCTTCTGTCATAACTACCCAAGGACTACTAAAAGAAAAGTTGTGTTACCTTTTTA
AATTTTCTGTTTTAAGTTTCCCTTCATTTTTGTGTTCTTGTGAAGAAAAAGTAAAACATGATTA
ATTTTGATATTATGAATTGCTTTCAACAAGCAAATGTTAAATGTGTAAGACTTGACTTGTACTA
GTGTTGTAATTTTCCAAGTAAAAGTGTTCCTAAAGGCAA

hide sequence

RefSeq Acc Id:

NM_009033 ⟹ NP_033059

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	79,231,898 - 79,235,557 (-)	NCBI
GRCm38	8	78,505,269 - 78,508,928 (-)	ENTREZGENE
MGSCv37	8	81,029,168 - 81,032,827 (-)	RGD
Celera	8	82,781,894 - 82,785,553 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTTGACGTTGCGCGGGGGGAGGGGAAGCCATTCGCGGCCTCTGGTTCTCGGCGGGAGCGGCGGC
GGCAGACGCGTGTGGCGACCGGCGCGGGAAAGCGGCTTCCTAGTTAGGGAAGCGTTAGCCCCGT
GGGTGCTCGTGTGCAGTAGTCCTAGTGGCTTTTCTGTTCTGTTCTGAGACCCAGCAGCTGTCAC
CGGTGAGCTACTTGGAAGGCCGATTTGGCGAGCTTGTAGGAGGAGCTTGAGACCTTCACGTCCC
CTCCGACTCTCAGCTGGAAGGCAAGATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGT
GGGCTTAATACAGAAACAAATGAGAAAGCCCTTGAAGCAGTATTTGGCAAGTATGGACGAATAG
TGGAAATACTTTTGATGAAAGACCGGGAAACCAACAAATCAAGAGGATTTGCTTTTGTTACCTT
CGAAAGCCCAGCAGATGCTAAAGATGCAGCTAGAGATATGAATGGAAAGTCCTTGGATGGAAAA
GCCATCAAGGTGGAGCAAGCTACCAAACCATCTTTTGAAAGTGGCAGGCGTGGACCACCTCCAC
CTCCAAGAAGCAGGGGCCCTCCCAGAGGTCTTCGAGGAGGAAGTGGAGGAACTAGGGGACCCCC
TTCACGTGGAGGATACATGGATGATGGTGGTTATTCCATGAACTTTAACATGAGTTCTTCCAGG
GGACCACTTCCAGTAAAGAGAGGACCACCACCACGAAGCGGGGGTCCCCCTCCTAAAAGATCAA
CACCTTCCGGACCAGTTCGAAGCAGCAGTGGAATGGGCGGAAGAACACCAGTGTCCCGTGGAAG
AGATAGCTACGGGGGTCCACCACGAAGGGAACCCCTGCCATCTCGCAGAGATGTTTATTTGTCC
CCAAGAGATGATGGATATTCTACAAAAGATAGCTATTCAAGCAGAGATTACCCAAGCTCCCGAG
ACACCAGAGATTATGCACCGCCACCAAGAGATTATACTTACCGTGATTACAGTCATTCCAGTTC
CCGTGATGACTATCCATCAAGAGGCTACGGTGATAGAGATGGATATGGTCGGGATCGTGACTAT
TCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGAAACTCACGCAGTG
CACCCCCTACACGAGGGCCACCACCATCTTATGGAGGAAGCAGTCGCTATGATGATTACAGCAG
CTCACGTGATGGCTACGGTGGAAGTCGAGACAGTTACTCAAGCAGCAGAAGTGATCTCTACTCA
AGTGGCCGTGATCGAGTTGGCAGACAAGAACGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACC
CTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGAGGAGCGCCAAGAGGAGGTGGCCGTGGAGG
GAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAGAAACAAATAAGACTTTGGATCAAG
GTCTCCATGCAAAGAAACAAAGGATGGAAAGTCTTCTGTCATAACTACCCAAGGACTACTAAAA
GAAAAGTTGTGTTACCTTTTTAAATTTTCTGTTTTAAGTTTCCCTTCATTTTTGTGTTCTTGTG
AAGAAAAAGTAAAACATGATTAATTTTGATATTATGAATTGCTTTCAACAAGCAAATGTTAAAT
GTGTAAGACTTGACTTGTACTAGTGTTGTAATTTTCCAAGTAAAAGTGTTCCTAAAGGCAAAAA
AAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001239018	(Get FASTA)	NCBI Sequence Viewer
	NP_001345903	(Get FASTA)	NCBI Sequence Viewer
	NP_001345904	(Get FASTA)	NCBI Sequence Viewer
	NP_033059	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB86639	(Get FASTA)	NCBI Sequence Viewer
	AAH11441	(Get FASTA)	NCBI Sequence Viewer
	AAH89350	(Get FASTA)	NCBI Sequence Viewer
	ABS83517	(Get FASTA)	NCBI Sequence Viewer
	BAC31099	(Get FASTA)	NCBI Sequence Viewer
	CBF67638	(Get FASTA)	NCBI Sequence Viewer
	CBU92512	(Get FASTA)	NCBI Sequence Viewer
	Q91VM5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_033059 ⟸ NM_009033

- UniProtKB:

Q91VM5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD
AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDD
GGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPR
REPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG
YGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGS
RDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGG
RSRY

hide sequence

RefSeq Acc Id:

NP_001239018 ⟸ NM_001252089

- UniProtKB:

Q91VM5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD
AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDD
GGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPR
REPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG
YGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGS
RDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGG
RSRY

hide sequence

RefSeq Acc Id:

NP_001345904 ⟸ NM_001358975

RefSeq Acc Id:

NP_001345903 ⟸ NM_001358974

RefSeq Acc Id:

ENSMUSP00000147384 ⟸ ENSMUST00000211719

RefSeq Acc Id:

ENSMUSP00000048153 ⟸ ENSMUST00000049245

Protein Domains

RRM

Promoters

RGD ID:

8667533

Promoter ID:

EPDNEW_M11798

Type:

initiation region

Name:

Rbmxl1_1

Description:

Mus musculus RNA binding motif protein, X-linked like-1 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	78,508,899 - 78,508,959	EPDNEW

RGD ID:

6843615

Promoter ID:

MM_KWN:54933

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000093415, ENSMUST00000093416, ENSMUST00000109899, NM_009033, NM_029736, UC009MIA.1, UC009MIB.1, UC009MIC.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	81,031,961 - 81,033,602 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1343045	AgrOrtholog
Ensembl Genes	ENSMUSG00000037070	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000048153	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000147384	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000049245	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000211719	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM1CTR	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	RRM_dom_euk	UniProtKB/Swiss-Prot
KEGG Report	mmu:19656	UniProtKB/Swiss-Prot
MGD	MGI:1343045	ENTREZGENE
NCBI Gene	19656	ENTREZGENE
Pfam	RBM1CTR	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbmxl1	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
SMART	RRM	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniGene	Mm.24718	ENTREZGENE
UniProt	B0LAC3_MOUSE	UniProtKB/TrEMBL
	Q91VM5	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	O35479	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-10-20	Rbmxl1	RNA binding motif protein, X-linked like-1		RNA binding motif protein, X linked-like-1	Symbol and/or name change	5135510	APPROVED
2011-11-22	Rbmxl1	RNA binding motif protein, X linked-like-1	Rbmxl1	RNA binding motif protein, X-linked-like-1	Symbol and/or name change	5135510	APPROVED
2011-11-08	Rbmxl1	RNA binding motif protein, X-linked-like-1	Rbmxrt	RNA binding motif protein, X chromosome retrogene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)