Rbmxl1 (RNA binding motif protein, X-linked like-1) - Rat Genome Database

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Gene: Rbmxl1 (RNA binding motif protein, X-linked like-1) Mus musculus
Analyze
Symbol: Rbmxl1
Name: RNA binding motif protein, X-linked like-1
RGD ID: 1315547
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and chromatin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system and sensory organ. Orthologous to human RBMXL1 (RBMX like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein G; heterogeneous nuclear ribonucleoprotein G (hnRNP G); heterogeneous nuclear ribonucleoprotein G-like 1; Hn; hnRNP G; Hnrpg; MGC102184; Rbmx; Rbmxrt; RNA binding motif protein, X chromosome retrogene; RNA binding motif protein, X linked-like-1; RNA binding motif protein, X-linked-like-1; RNA-binding motif protein, X chromosome
RGD Orthologs
Human
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7324  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,231,898 - 79,235,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,231,898 - 79,235,527 (-)EnsemblGRCm39 Ensembl
GRCm38878,505,269 - 78,508,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,505,269 - 78,508,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,029,168 - 81,032,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36881,401,341 - 81,405,000 (-)NCBIMGSCv36mm8
Celera882,781,894 - 82,785,553 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8617202   PMID:9457683   PMID:10349636   PMID:10391207   PMID:10512203   PMID:10716735   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583  
PMID:15782199   PMID:15840001   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16919269   PMID:17188681   PMID:18799693   PMID:19403048   PMID:19723774   PMID:19858291   PMID:21873635  
PMID:22794259   PMID:23604909   PMID:24457600   PMID:28378742   PMID:30068389   PMID:30595499   PMID:31138677   PMID:32098917   PMID:32325033   PMID:32434143   PMID:32968282   PMID:33601422  
PMID:36293380   PMID:37839992  


Genomics

Comparative Map Data
Rbmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,231,898 - 79,235,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,231,898 - 79,235,527 (-)EnsemblGRCm39 Ensembl
GRCm38878,505,269 - 78,508,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,505,269 - 78,508,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37881,029,168 - 81,032,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36881,401,341 - 81,405,000 (-)NCBIMGSCv36mm8
Celera882,781,894 - 82,785,553 (-)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.04NCBI
RBMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38188,979,456 - 88,992,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl188,979,456 - 88,992,960 (-)EnsemblGRCh38hg38GRCh38
GRCh37189,445,139 - 89,458,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,218,710 - 89,231,104 (-)NCBINCBI36Build 36hg18NCBI36
Celera187,690,929 - 87,704,434 (-)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef187,562,493 - 87,576,019 (-)NCBIHuRef
CHM1_1189,560,200 - 89,573,685 (-)NCBICHM1_1
T2T-CHM13v2.0188,822,848 - 88,836,026 (-)NCBIT2T-CHM13v2.0
Rbmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,312,176 - 46,315,802 (+)NCBIGRCr8
mRatBN7.21929,407,902 - 29,411,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,407,912 - 29,412,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1936,255,618 - 36,259,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,909,490 - 36,913,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01939,158,601 - 39,162,176 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01933,081,473 - 33,084,988 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,083,412 - 33,084,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,973,668 - 43,977,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,310,317 - 31,313,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11931,314,771 - 31,318,720 (+)NCBI
Celera1928,906,579 - 28,910,137 (+)NCBICelera
Cytogenetic Map19q11NCBI
RBMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,985,862 - 137,990,552 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11137,141,657 - 137,146,346 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0191,695,452 - 91,708,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RBMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12044,416,179 - 44,428,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603373,478,836 - 73,491,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rbmxl1
141 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:46
Interacting mature miRNAs:47
Transcripts:ENSMUST00000049245
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse

Markers in Region
Rbmxrt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C1UniSTS
cM Map8 UniSTS
cM Map837.04UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC101757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY262810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB886963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC944372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049245   ⟹   ENSMUSP00000048153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl879,231,898 - 79,235,527 (-)Ensembl
GRCm38.p6 Ensembl878,505,269 - 78,508,898 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211719   ⟹   ENSMUSP00000147384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl879,231,906 - 79,235,508 (-)Ensembl
GRCm38.p6 Ensembl878,505,277 - 78,508,879 (-)Ensembl
RefSeq Acc Id: NM_001252089   ⟹   NP_001239018
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,231,898 - 79,235,557 (-)NCBI
GRCm38878,505,269 - 78,508,928 (-)ENTREZGENE
Celera882,781,894 - 82,785,553 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358974   ⟹   NP_001345903
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,231,898 - 79,235,197 (-)NCBI
GRCm38878,505,269 - 78,508,568 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358975   ⟹   NP_001345904
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,231,898 - 79,235,197 (-)NCBI
GRCm38878,505,269 - 78,508,568 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009033   ⟹   NP_033059
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,231,898 - 79,235,557 (-)NCBI
GRCm38878,505,269 - 78,508,928 (-)ENTREZGENE
MGSCv37881,029,168 - 81,032,827 (-)RGD
Celera882,781,894 - 82,785,553 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033059   ⟸   NM_009033
- UniProtKB: O35479 (UniProtKB/Swiss-Prot),   Q91VM5 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239018   ⟸   NM_001252089
- UniProtKB: O35479 (UniProtKB/Swiss-Prot),   Q91VM5 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345904   ⟸   NM_001358975
- UniProtKB: Q91VM5 (UniProtKB/Swiss-Prot),   O35479 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345903   ⟸   NM_001358974
- UniProtKB: Q91VM5 (UniProtKB/Swiss-Prot),   O35479 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000147384   ⟸   ENSMUST00000211719
RefSeq Acc Id: ENSMUSP00000048153   ⟸   ENSMUST00000049245
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91VM5-F1-model_v2 AlphaFold Q91VM5 1-388 view protein structure

Promoters
RGD ID:8667533
Promoter ID:EPDNEW_M11798
Type:initiation region
Name:Rbmxl1_1
Description:Mus musculus RNA binding motif protein, X-linked like-1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38878,508,899 - 78,508,959EPDNEW
RGD ID:6843615
Promoter ID:MM_KWN:54933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000093415,   ENSMUST00000093416,   ENSMUST00000109899,   NM_009033,   NM_029736,   UC009MIA.1,   UC009MIB.1,   UC009MIC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36881,031,961 - 81,033,602 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1343045 AgrOrtholog
Ensembl Genes ENSMUSG00000037070 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049245 ENTREZGENE
  ENSMUST00000049245.10 UniProtKB/Swiss-Prot
  ENSMUST00000211719 ENTREZGENE
  ENSMUST00000211719.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM1CTR UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  RRM_dom_euk UniProtKB/Swiss-Prot
KEGG Report mmu:19656 UniProtKB/Swiss-Prot
MGD MGI:1343045 ENTREZGENE
NCBI Gene 19656 ENTREZGENE
PANTHER RNA-BINDING MOTIF PROTEIN, X CHROMOSOME UniProtKB/Swiss-Prot
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RBM1CTR UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbmxl1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A2I3BRL8 ENTREZGENE
  B0LAC3_MOUSE UniProtKB/TrEMBL
  O35479 ENTREZGENE
  Q91VM5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35479 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-20 Rbmxl1  RNA binding motif protein, X-linked like-1    RNA binding motif protein, X linked-like-1  Symbol and/or name change 5135510 APPROVED
2011-11-22 Rbmxl1  RNA binding motif protein, X linked-like-1  Rbmxl1  RNA binding motif protein, X-linked-like-1  Symbol and/or name change 5135510 APPROVED
2011-11-08 Rbmxl1  RNA binding motif protein, X-linked-like-1  Rbmxrt  RNA binding motif protein, X chromosome retrogene  Symbol and/or name change 5135510 APPROVED