Vopp1 (VOPP1 WW domain binding protein)

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Gene: Vopp1 (VOPP1 WW domain binding protein) Rattus norvegicus

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Symbol:

Vopp1

Name:

VOPP1 WW domain binding protein

RGD ID:

1306494

Description:

Predicted to enable enzyme binding activity. Predicted to be located in cytoplasmic vesicle membrane; late endosome; and lysosome. Predicted to be active in organelle membrane. Orthologous to human VOPP1 (VOPP1 WW domain binding protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ecop; EGFR-coamplified and overexpressed protein; LOC362374; RGD1306494; similar to EGFR-coamplified and overexpressed protein; similar to Expressed sequence AW146242; vesicular, overexpressed in cancer, prosurvival protein 1; VOPP1, WBP1/VOPP1 family member; WW domain binding protein VOPP1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VOPP1 (VOPP1 WW domain binding protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Vopp1 (vesicular, overexpressed in cancer, prosurvival protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vopp1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VOPP1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VOPP1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vopp1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VOPP1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VOPP1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vopp1 (VOPP1 WW domain binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Vopp1 (vesicular, overexpressed in cancer, prosurvival protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	VOPP1 (VOPP1 WW domain binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-24c2.9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	vopp1 (VOPP1 WW domain binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vopp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	88,692,784 - 88,762,903 (+)	NCBI		GRCr8
mRatBN7.2	4	87,363,678 - 87,432,747 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	87,363,477 - 87,450,375 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	92,585,343 - 92,654,451 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	88,360,746 - 88,429,856 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	86,723,766 - 86,792,952 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	88,441,067 - 88,515,141 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	88,441,067 - 88,515,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	153,266,271 - 153,337,779 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	87,116,146 - 87,186,828 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	87,358,867 - 87,429,606 (+)	NCBI
Celera	4	82,130,454 - 82,198,637 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

autistic disorder (ISO)

Experimental Liver Cirrhosis (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-chloro-7-iodoquinolin-8-ol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

cisplatin (EXP)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

indometacin (ISO)

isotretinoin (ISO)

lead(0) (ISO)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (EXP)

oxaliplatin (EXP)

ozone (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasmic vesicle membrane (ISO)

endosome (ISO)

late endosome (ISO)

late endosome membrane (IEA)

lysosomal membrane (IEA)

lysosome (ISO)

organelle membrane (IBA,ISO)

Molecular Function

enzyme binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12761501	PMID:20571887

Genomics

Comparative Map Data

Vopp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	88,692,784 - 88,762,903 (+)	NCBI		GRCr8
mRatBN7.2	4	87,363,678 - 87,432,747 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	87,363,477 - 87,450,375 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	92,585,343 - 92,654,451 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	88,360,746 - 88,429,856 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	86,723,766 - 86,792,952 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	88,441,067 - 88,515,141 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	88,441,067 - 88,515,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	153,266,271 - 153,337,779 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	87,116,146 - 87,186,828 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	87,358,867 - 87,429,606 (+)	NCBI
Celera	4	82,130,454 - 82,198,637 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

VOPP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	55,434,964 - 55,572,502 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	55,436,056 - 55,572,988 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	55,538,301 - 55,640,195 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	55,505,800 - 55,607,694 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	55,641,499 - 55,692,013 (-)	NCBI		Celera
Cytogenetic Map	7	p11.2	NCBI
HuRef	7	55,373,863 - 55,475,623 (-)	NCBI		HuRef
CHM1_1	7	55,540,980 - 55,642,824 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	55,594,635 - 55,732,784 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	55,542,585 - 55,644,447 (-)	NCBI

Vopp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	57,729,249 - 57,802,110 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	57,704,792 - 57,802,144 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	57,752,264 - 57,827,983 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	57,727,807 - 57,825,159 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	57,702,258 - 57,775,119 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	57,681,842 - 57,754,703 (-)	NCBI		MGSCv36	mm8
Celera	6	58,495,992 - 58,569,211 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	27.82	NCBI

Vopp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	141,848 - 179,859 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	88,525 - 181,480 (+)	NCBI	ChiLan1.0	ChiLan1.0

VOPP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	60,300,895 - 60,402,679 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	108,625,620 - 108,727,401 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	56,061,704 - 56,163,517 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	56,372,027 - 56,422,495 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	56,372,027 - 56,463,310 (-)	Ensembl	panpan1.1		panPan2

VOPP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	6,282,050 - 6,387,687 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	6,282,426 - 6,386,703 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	6,127,459 - 6,232,357 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	6,324,333 - 6,429,496 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	6,324,335 - 6,430,510 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	6,314,150 - 6,419,178 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	6,288,335 - 6,387,218 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	6,394,579 - 6,499,861 (-)	NCBI		UU_Cfam_GSD_1.0

Vopp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	109,696,141 - 109,793,922 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936678	95,041 - 191,488 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936678	95,655 - 193,415 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VOPP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	48,607,919 - 48,693,815 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	48,607,923 - 48,693,858 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

VOPP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	3,295,395 - 3,395,206 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	3,295,521 - 3,397,529 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	19,196,523 - 19,296,703 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vopp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	375,944 - 469,111 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	375,651 - 470,841 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Vopp1
433 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	646
Count of miRNA genes:	280
Interacting mature miRNAs:	375
Transcripts:	ENSRNOT00000008885
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	103194791	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	86730991	131730991	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78885890	102684881	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	87327165	132327165	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	87327165	132327165	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	83428419	95853334	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65882107	96130297	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	62933269	87483707	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat

Markers in Region

RH128593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	87,432,487 - 87,432,682 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	88,514,879 - 88,515,073	NCBI	Rnor6.0
Rnor_5.0	4	153,337,517 - 153,337,711	UniSTS	Rnor5.0
RGSC_v3.4	4	87,186,569 - 87,186,763	UniSTS	RGSC3.4
Celera	4	82,198,378 - 82,198,572	UniSTS
RH 3.4 Map	4	543.3	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH135269

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	4	153,286,821 - 153,287,007	NCBI	Rnor5.0
RGSC_v3.4	4	87,136,698 - 87,136,883	UniSTS	RGSC3.4
Celera	4	82,151,002 - 82,151,187	UniSTS
RH 3.4 Map	4	544.6	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008885 ⟹ ENSRNOP00000008885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	87,363,552 - 87,432,750 (+)	Ensembl
Rnor_6.0 Ensembl	4	88,441,067 - 88,515,138 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095430 ⟹ ENSRNOP00000080713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	87,363,552 - 87,450,375 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118002 ⟹ ENSRNOP00000083388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	87,363,477 - 87,432,750 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119220 ⟹ ENSRNOP00000092555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	87,389,885 - 87,432,750 (+)	Ensembl

RefSeq Acc Id:

NM_001108630 ⟹ NP_001102100

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,693,839 - 88,762,900 (+)	NCBI
mRatBN7.2	4	87,363,678 - 87,432,747 (+)	NCBI
Rnor_6.0	4	88,441,067 - 88,515,138 (+)	NCBI
Rnor_5.0	4	153,266,271 - 153,337,779 (+)	NCBI
RGSC_v3.4	4	87,116,146 - 87,186,828 (+)	RGD
Celera	4	82,130,454 - 82,198,637 (+)	RGD

Sequence:

show sequence

GGTGGGTCGGGAGCGCGCGGCGAGGGTGGCTTGGCACGTCCTCCAGCTCTGCCGGCCTGCGGCG
CGTCCTTCTGCCGGCGTCGGCTCATATCCCCGGAGTCCACCCGCCCGCCCCGGGCTGTGCAGCC
CGGCTTCAGGCGGTCCTCGCCGGAGCCATGGCCCGCCCGCTCGGCAGAGTGGCAGCGCTGCTGC
TAGGGCTGCTAATGGAGTGCACAGAGGCCAAAAAACATTGCTGGTATTTTGAAGGACTCTATCC
CACATACTATATATGCCGTTCCTATGAAGACTGCTGTGGCTCCAGGTGCTGTGTGCGGGCCCTC
TCCATACAGAGGCTGTGGTATTTTTGGTTCCTGCTGATGATGGGTGTGCTGTTCTGTTGTGGAG
CTGGCTTCTTCATCCGCCGGCGCATGTATCCACCACCGCTCATTGAGGAGCCCACATTCAACGT
GTCCTATACCAGGCAGCCACCAAATCCTGCTCCAGGAGCACAGCAAATGGGGCCGCCATATTAC
ACCGACCCTGGAGGACCTGGAATGAATCCTGTTGGCAATACCATGGCTATGGCTTTCCAGGTCC
AGCCCAATTCACCCCACGGAGGCACAACTTACCCACCTCCTCCCTCCTACTGCAACACGCCCCC
ACCCCCCTATGAACAGGTGGTGAAGGACAAGTAGCAAGATGGTACATCGAAGGCAAAGAGGATG
GACAGGCCCTTTTGTATTCCTCTCCATCCTCACTGATTCTTGCTAATAGAGTGGTCCAAGGGCA
CACTTCTCTTTGATATTTTCAAAGCAAGCCCAGCTCTCTTTCAAGTTTTTTGTGGAGGACATTT
GAATCCACACTGTCTCCTCTGTTGCTTCTGTTTCTGATGTAGTTTGTGCTCTCTGAGAGAGTGT
GGCAGCAGTCCCTGAGGGCCGATATTCCTAGGGTGGCATGGGTAGATCCTCGAGAGAGAGGCTA
AGAGGGAAGGAAGGCATAGCCTATGTGTCAGGGAGCAGATAAAGCGGTCAGGCTGAGCTAAGAC
TCACATGTGCAGTAGCTGGCAGTGAAGTCCCAAGAGACACTATCCCAGCCCCTTCCCCTAATAG
AAGCTGTGGGGATGTGCTGCTGATGCTCTTGGTGTCCACTCACAGTTTGAAAATAGGCTTTCCT
CTGCAGGAATAAGAAAGACCCAAGTGCATATTGCTTCCACTAAAAAACGAGGGTCGGAATCAGG
CCTCAGTTGGACATGTGTAGTTAAATAAAGACCAGTAGAGAGGGCAAGTCTTTAAGTTAGGGAA
AATTCTCTAAATGGAGACATTACATTTTATGAATCACAGTCTGGCTTTTCTTTTAGTGCATGTA
TTAAAGTGAGGGCGTGTTCTTTGAGATCATATGGAGAATGGAAACTGGGGGGATCTCTGCTCAA
AGGGCTTCAACACCCTTTTCTTAAGTAGTTCTGGTGATGGGCTTTATGGACCCTATAGAGCTGA
GGGACACATTAGGCTGGGTAGTTACATTGACCCCTGGAGAGGGGGAGAGAACAGCCAAAGAGAC
CCAGCAAAGCAAGCCCAGCATTGCTGAGTAAAAGCTAGGGTTATATGTGATTCCAGCAGAGATG
TGCTGGCCTCAGAAAAGGGGATGTTTGTGGATAGAACAGTGAAAACCTACTTAGTTGCACAGAC
CACATAATCAAAAGTAGAGAAAGAAGTGTAGTTAGAGATGCTGTTTCCTGGGTGAGAATCAGAG
CTCATCCATAGATTTACAAGTAGTAGCGGGAGTTGTTAGCAGTGCCGAGTTCTGTTCCCTTTTA
TAGTTAGTCATGTTGATGTGTATTTAAACCCAGGTTGAGACCTTGTGTACTAAGAGCAAGAAAG
TATAGCTAAGATGCCTAGATTATTTATGTGTAGTATGGTGGGGAGTGGGCTGCAAGGAAGGGGA
CTGACTGAAAATGAACTAACCAGAGCCATTTGATAAACCGTTACTTGTTTAACCGGGCATCTAA
ACGTGTCTCTTGAGTGGACACTGAGTATTCTTTATCATCCACAAGACCAGGAGGCAAGGTGTCA
TTCTCCGTTGGGATATTTATAGGAGGCAGAGGTTTAGGAACTGAAAGTAGTTGTGTGGGCTTAG
TTTAAGGACAGAAGGCTTGGAGACTTGCAGACTGTTTCATAGGAAATTGCAGGGAAGAAATGGA
TATCTTTAAAGACAGTTTGCGGATGCAGATGCTGCTGCCAATCATTGAGCACCCTTGTGTCTGG
TTTCCTGTCACTGGATCCATTACCCTTCCATGCTTGGGTCCTTGTTTTACATAAGACGACAAAG
CACAATGTCTGCTGTTTACAATCAAGACGACTACACGGTCCAAACATTTCCTCTCTCCTCTATC
ACTTGTGGCTTTAACTTCAATTTCTTCTGTTCCTTTTTAAAACCAAGAAGCACAGTCAGAGCTG
CCCCTGGGATTACACCAGGGAACGGCTGATCAAGGCACTCGGTGTCCGTGACTAAATCTAATCT
TTTTGATAGCAAATCCTTTTGAGAAACTGAACGACTGATAGGGCTCAGCAATTTTATACTCCAA
TGTCTGTTTAAGATACATTTTGTTCCCATCGAGCCCGCATTGGAATTCCTTCAGACGTAAATAC
TGACGATGCCTATGGAAACTGCACCTCTAGGGGATGTTTCCTAGCATTCTTGTTTTCTTCTGTT
TGGTGAGTAAGGCTCACCTCTTCCAGCAGCTCCACTTGTGTGCTGAGGTCCTGTACAGCCGGTG
CTTGGAGACAGACCTGAAGCAGACTTGTGCATGCTCTCTTTTGGCAACACTTGGCTGACGTTTC
TTCTTTGTTCTCTTTTGATAGAGTCCTGTTTCCTATGTATTTAAAAAAAATAAAAGTGAATTTA
GTC

hide sequence

RefSeq Acc Id:

XM_006236578 ⟹ XP_006236640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,694,157 - 88,762,903 (+)	NCBI
mRatBN7.2	4	87,364,028 - 87,432,744 (+)	NCBI
Rnor_6.0	4	88,441,309 - 88,515,141 (+)	NCBI
Rnor_5.0	4	153,266,271 - 153,337,779 (+)	NCBI

Sequence:

show sequence

AGGGACGCGGGAAGGGCACTGCGGAGCTCGCGAGTCTGCCGTGTGGGGCGGCGGTGGGGCCTGA
TGTCCGGACCCCCAGTCCTCCCAGCGCGCCTCCTCCTTCTGTCTGCGCCCGGTTTCCCCCATCG
CTGCTTGCTCGGGTTTGCGGCCCCGGGGAGGGACCTTTGTGCGTGTCCACACGCGCATCCCGGC
GCTAGGGGCCTGGGGCGGCGCCTCCCGCAGCTGGTAGGAGGGACAGGGACATTTCTGCCTTTGG
AGATGAAGTGCAAGCTTTTAGAAGCGAGGAGAAAAATTCCACGGGGAGCTTGGGTGTACTGAAG
TGAAGCCGCGGGAACTTGATGTGCACAGAGGCCAAAAAACATTGCTGGTATTTTGAAGGACTCT
ATCCCACATACTATATATGCCGTTCCTATGAAGACTGCTGTGGCTCCAGGTGCTGTGTGCGGGC
CCTCTCCATACAGAGGCTGTGGTATTTTTGGTTCCTGCTGATGATGGGTGTGCTGTTCTGTTGT
GGAGCTGGCTTCTTCATCCGCCGGCGCATGTATCCACCACCGCTCATTGAGGAGCCCACATTCA
ACGTGTCCTATACCAGGCAGCCACCAAATCCTGCTCCAGGAGCACAGCAAATGGGGCCGCCATA
TTACACCGACCCTGGAGGACCTGGAATGAATCCTGTTGGCAATACCATGGCTATGGCTTTCCAG
GTCCAGCCCAATTCACCCCACGGAGGCACAACTTACCCACCTCCTCCCTCCTACTGCAACACGC
CCCCACCCCCCTATGAACAGGTGGTGAAGGACAAGTAGCAAGATGGTACATCGAAGGCAAAGAG
GATGGACAGGCCCTTTTGTATTCCTCTCCATCCTCACTGATTCTTGCTAATAGAGTGGTCCAAG
GGCACACTTCTCTTTGATATTTTCAAAGCAAGCCCAGCTCTCTTTCAAGTTTTTTGTGGAGGAC
ATTTGAATCCACACTGTCTCCTCTGTTGCTTCTGTTTCTGATGTAGTTTGTGCTCTCTGAGAGA
GTGTGGCAGCAGTCCCTGAGGGCCGATATTCCTAGGGTGGCATGGGTAGATCCTCGAGAGAGAG
GCTAAGAGGGAAGGAAGGCATAGCCTATGTGTCAGGGAGCAGATAAAGCGGTCAGGCTGAGCTA
AGACTCACATGTGCAGTAGCTGGCAGTGAAGTCCCAAGAGACACTATCCCAGCCCCTTCCCCTA
ATAGAAGCTGTGGGGATGTGCTGCTGATGCTCTTGGTGTCCACTCACAGTTTGAAAATAGGCTT
TCCTCTGCAGGAATAAGAAAGACCCAAGTGCATATTGCTTCCACTAAAAAACGAGGGTCGGAAT
CAGGCCTCAGTTGGACATGTGTAGTTAAATAAAGACCAGTAGAGAGGGCAAGTCTTTAAGTTAG
GGAAAATTCTCTAAATGGAGACATTACATTTTATGAATCACAGTCTGGCTTTTCTTTTAGTGCA
TGTATTAAAGTGAGGGCGTGTTCTTTGAGATCATATGGAGAATGGAAACTGGGGGGATCTCTGC
TCAAAGGGCTTCAACACCCTTTTCTTAAGTAGTTCTGGTGATGGGCTTTATGGACCCTATAGAG
CTGAGGGACACATTAGGCTGGGTAGTTACATTGACCCCTGGAGAGGGGGAGAGAACAGCCAAAG
AGACCCAGCAAAGCAAGCCCAGCATTGCTGAGTAAAAGCTAGGGTTATATGTGATTCCAGCAGA
GATGTGCTGGCCTCAGAAAAGGGGATGTTTGTGGATAGAACAGTGAAAACCTACTTAGTTGCAC
AGACCACATAATCAAAAGTAGAGAAAGAAGTGTAGTTAGAGATGCTGTTTCCTGGGTGAGAATC
AGAGCTCATCCATAGATTTACAAGTAGTAGCGGGAGTTGTTAGCAGTGCCGAGTTCTGTTCCCT
TTTATAGTTAGTCATGTTGATGTGTATTTAAACCCAGGTTGAGACCTTGTGTACTAAGAGCAAG
AAAGTATAGCTAAGATGCCTAGATTATTTATGTGTAGTATGGTGGGGAGTGGGCTGCAAGGAAG
GGGACTGACTGAAAATGAACTAACCAGAGCCATTTGATAAACCGTTACTTGTTTAACCGGGCAT
CTAAACGTGTCTCTTGAGTGGACACTGAGTATTCTTTATCATCCACAAGACCAGGAGGCAAGGT
GTCATTCTCCGTTGGGATATTTATAGGAGGCAGAGGTTTAGGAACTGAAAGTAGTTGTGTGGGC
TTAGTTTAAGGACAGAAGGCTTGGAGACTTGCAGACTGTTTCATAGGAAATTGCAGGGAAGAAA
TGGATATCTTTAAAGACAGTTTGCGGATGCAGATGCTGCTGCCAATCATTGAGCACCCTTGTGT
CTGGTTTCCTGTCACTGGATCCATTACCCTTCCATGCTTGGGTCCTTGTTTTACATAAGACGAC
AAAGCACAATGTCTGCTGTTTACAATCAAGACGACTACACGGTCCAAACATTTCCTCTCTCCTC
TATCACTTGTGGCTTTAACTTCAATTTCTTCTGTTCCTTTTTAAAACCAAGAAGCACAGTCAGA
GCTGCCCCTGGGATTACACCAGGGAACGGCTGATCAAGGCACTCGGTGTCCGTGACTAAATCTA
ATCTTTTTGATAGCAAATCCTTTTGAGAAACTGAACGACTGATAGGGCTCAGCAATTTTATACT
CCAATGTCTGTTTAAGATACATTTTGTTCCCATCGAGCCCGCATTGGAATTCCTTCAGACGTAA
ATACTGACGATGCCTATGGAAACTGCACCTCTAGGGGATGTTTCCTAGCATTCTTGTTTTCTTC
TGTTTGGTGAGTAAGGCTCACCTCTTCCAGCAGCTCCACTTGTGTGCTGAGGTCCTGTACAGCC
GGTGCTTGGAGACAGACCTGAAGCAGACTTGTGCATGCTCTCTTTTGGCAACACTTGGCTGACG
TTTCTTCTTTGTTCTCTTTTGATAGAGTCCTGTTTCCTATGTATTTAAAAAAAATAAAAGTGAA
TTTAGTCACA

hide sequence

RefSeq Acc Id:

XM_063286274 ⟹ XP_063142344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,693,846 - 88,760,637 (+)	NCBI

RefSeq Acc Id:

XM_063286275 ⟹ XP_063142345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,692,784 - 88,762,903 (+)	NCBI

RefSeq Acc Id:

XM_063286276 ⟹ XP_063142346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,696,554 - 88,762,903 (+)	NCBI

RefSeq Acc Id:

XM_063286277 ⟹ XP_063142347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	88,693,907 - 88,762,903 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102100	(Get FASTA)	NCBI Sequence Viewer
	XP_006236640	(Get FASTA)	NCBI Sequence Viewer
	XP_063142344	(Get FASTA)	NCBI Sequence Viewer
	XP_063142345	(Get FASTA)	NCBI Sequence Viewer
	XP_063142346	(Get FASTA)	NCBI Sequence Viewer
	XP_063142347	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68709	(Get FASTA)	NCBI Sequence Viewer
	B5DEK8	(Get FASTA)	NCBI Sequence Viewer
	EDL88041	(Get FASTA)	NCBI Sequence Viewer
	EDL88042	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008885.4
	ENSRNOP00000080713.1
	ENSRNOP00000083388.1
	ENSRNOP00000092555.1
	ENSRNOP00055015550
	ENSRNOP00060032014
	ENSRNOP00065014335

RefSeq Acc Id:	NP_001102100 ⟸ NM_001108630
- Peptide Label:	precursor
- UniProtKB:	B5DEK8 (UniProtKB/Swiss-Prot), A0A8I6AIE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARPLGRVAALLLGLLMECTEAKKHCWYFEGLYPTYYICRSYEDCCGSRCCVRALSIQRLWYFW FLLMMGVLFCCGAGFFIRRRMYPPPLIEEPTFNVSYTRQPPNPAPGAQQMGPPYYTDPGGPGMN PVGNTMAMAFQVQPNSPHGGTTYPPPPSYCNTPPPPYEQVVKDK hide sequence

RefSeq Acc Id:	XP_006236640 ⟸ XM_006236578
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AIE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCTEAKKHCWYFEGLYPTYYICRSYEDCCGSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFI RRRMYPPPLIEEPTFNVSYTRQPPNPAPGAQQMGPPYYTDPGGPGMNPVGNTMAMAFQVQPNSP HGGTTYPPPPSYCNTPPPPYEQVVKDK hide sequence

Ensembl Acc Id:

ENSRNOP00000008885 ⟸ ENSRNOT00000008885

Ensembl Acc Id:

ENSRNOP00000083388 ⟸ ENSRNOT00000118002

Ensembl Acc Id:

ENSRNOP00000080713 ⟸ ENSRNOT00000095430

Ensembl Acc Id:

ENSRNOP00000092555 ⟸ ENSRNOT00000119220

RefSeq Acc Id:	XP_063142345 ⟸ XM_063286275
- Peptide Label:	isoform X3
- UniProtKB:	A6K127 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142344 ⟸ XM_063286274
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZTM1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142347 ⟸ XM_063286277
- Peptide Label:	isoform X3
- UniProtKB:	A6K127 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142346 ⟸ XM_063286276
- Peptide Label:	isoform X3
- UniProtKB:	A6K127 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEK8-F1-model_v2	AlphaFold	B5DEK8	1-172	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693083

Promoter ID:

EPDNEW_R3607

Type:

initiation region

Name:

Vopp1_1

Description:

VOPP1, WBP1/VOPP1 family member

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	88,441,103 - 88,441,163	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306494	AgrOrtholog
BioCyc Gene	G2FUF-44667	BioCyc
Ensembl Genes	ENSRNOG00000006646	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055011358	UniProtKB/Swiss-Prot
	ENSRNOG00060022292	UniProtKB/Swiss-Prot
	ENSRNOG00065011518	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008885.6	UniProtKB/Swiss-Prot
	ENSRNOT00000095430.1	UniProtKB/TrEMBL
	ENSRNOT00000118002.1	UniProtKB/TrEMBL
	ENSRNOT00000119220.1	UniProtKB/TrEMBL
	ENSRNOT00055019278	UniProtKB/Swiss-Prot
	ENSRNOT00060038761	UniProtKB/Swiss-Prot
	ENSRNOT00065018759	UniProtKB/Swiss-Prot
InterPro	VOPP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362374	UniProtKB/Swiss-Prot
NCBI Gene	362374	ENTREZGENE
PANTHER	PTHR14971	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Vopp1	PhenoGen
PRINTS	VOPPROTEIN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006646	RatGTEx
	ENSRNOG00055011358	RatGTEx
	ENSRNOG00060022292	RatGTEx
	ENSRNOG00065011518	RatGTEx
UniProt	A0A8I5ZTM1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZW8_RAT	UniProtKB/TrEMBL
	A0A8I6AIE2	ENTREZGENE, UniProtKB/TrEMBL
	A6K127	ENTREZGENE, UniProtKB/TrEMBL
	B5DEK8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-02	Vopp1	VOPP1 WW domain binding protein	Vopp1	VOPP1, WBP1/VOPP1 family member	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-10-30	Vopp1	VOPP1, WBP1/VOPP1 family member	Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1	LOC691236	similar to EGFR-coamplified and overexpressed protein	Data merged from RGD:1586270	1643240	APPROVED
2011-08-02	Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1	Ecop	EGFR-coamplified and overexpressed protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ecop	EGFR-coamplified and overexpressed protein	RGD1306494_predicted	similar to Expressed sequence AW146242 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC691236	similar to EGFR-coamplified and overexpressed protein			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1306494_predicted	similar to Expressed sequence AW146242 (predicted)	LOC362374_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362374_predicted	similar to Expressed sequence AW146242 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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