Ctdsp1 (CTD small phosphatase 1) - Rat Genome Database

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Gene: Ctdsp1 (CTD small phosphatase 1) Rattus norvegicus
Analyze
Symbol: Ctdsp1
Name: CTD small phosphatase 1
RGD ID: 1305629
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in protein dephosphorylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle; negative regulation of cell differentiation; and negative regulation of protein phosphorylation. Predicted to be located in nucleoplasm. Orthologous to human CTDSP1 (CTD small phosphatase 1); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; RNA polymerase II transcription pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1; LOC363249
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,422,755 - 83,428,411 (+)NCBIGRCr8
mRatBN7.2975,973,694 - 75,979,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,973,962 - 75,979,297 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,419,092 - 84,424,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,548,036 - 89,553,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,934,220 - 87,939,465 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,672,613 - 81,677,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,672,758 - 81,677,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,437,162 - 81,442,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,731,542 - 73,736,764 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,878,323 - 73,884,036 (+)NCBI
Celera973,547,362 - 73,552,583 (+)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-bromohexadecanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
hypochlorous acid  (ISO)
iron dichloride  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
propanal  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Organization of SCP1 protein molecules within synaptonemal complexes of the rat. Schmekel K, etal., Exp Cell Res. 1996 Jul 10;226(1):20-30.
Additional References at PubMed
PMID:12477932   PMID:12721286   PMID:17403776   PMID:22210897   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Ctdsp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,422,755 - 83,428,411 (+)NCBIGRCr8
mRatBN7.2975,973,694 - 75,979,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,973,962 - 75,979,297 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,419,092 - 84,424,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,548,036 - 89,553,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,934,220 - 87,939,465 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,672,613 - 81,677,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,672,758 - 81,677,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,437,162 - 81,442,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,731,542 - 73,736,764 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,878,323 - 73,884,036 (+)NCBI
Celera973,547,362 - 73,552,583 (+)NCBICelera
Cytogenetic Map9q33NCBI
CTDSP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,396,351 - 218,405,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,397,136 - 218,405,941 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,261,074 - 219,270,664 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,972,722 - 218,978,908 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,090,318 - 219,094,653NCBI
Celera2213,031,099 - 213,037,286 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,116,361 - 211,123,788 (+)NCBIHuRef
CHM1_12219,269,716 - 219,277,310 (+)NCBICHM1_1
T2T-CHM13v2.02218,882,480 - 218,892,071 (+)NCBIT2T-CHM13v2.0
Ctdsp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,430,625 - 74,436,444 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,430,668 - 74,436,444 (+)EnsemblGRCm39 Ensembl
GRCm38174,391,609 - 74,397,285 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,391,509 - 74,397,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,438,183 - 74,443,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,324,806 - 74,330,492 (+)NCBIMGSCv36mm8
Celera174,949,106 - 74,954,751 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.54NCBI
Ctdsp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,968,484 - 14,976,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,971,276 - 14,976,667 (-)NCBIChiLan1.0ChiLan1.0
CTDSP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,030,133 - 121,037,379 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,046,174 - 121,052,346 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,658,394 - 105,664,571 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,255,827 - 224,262,000 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,254,460 - 224,262,000 (+)Ensemblpanpan1.1panPan2
CTDSP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,051,839 - 25,057,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,050,267 - 25,056,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,871,675 - 25,876,792 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,067,383 - 25,072,492 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,067,283 - 25,073,037 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,972,928 - 24,978,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,906,589 - 24,911,706 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,926,942 - 24,932,060 (+)NCBIUU_Cfam_GSD_1.0
Ctdsp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,558,749 - 174,562,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936569900,439 - 903,622 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936569901,357 - 905,149 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDSP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,450,760 - 120,456,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,450,649 - 120,456,874 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTDSP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,291,494 - 104,298,982 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,293,073 - 104,299,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604095,103,403 - 95,110,514 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdsp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,601,919 - 6,608,552 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,603,095 - 6,608,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctdsp1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:117
Interacting mature miRNAs:141
Transcripts:ENSRNOT00000020646
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat

Markers in Region
RH141035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2975,978,983 - 75,979,183 (+)MAPPERmRatBN7.2
Rnor_6.0981,677,663 - 81,677,862NCBIRnor6.0
Rnor_5.0981,442,212 - 81,442,411UniSTSRnor5.0
RGSC_v3.4973,736,450 - 73,736,649UniSTSRGSC3.4
Celera973,552,269 - 73,552,468UniSTS
RH 3.4 Map9707.7UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000020646   ⟹   ENSRNOP00000020646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl975,973,962 - 75,979,297 (+)Ensembl
Rnor_6.0 Ensembl981,672,758 - 81,677,979 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,675,364 - 81,676,521 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,672,817 - 81,674,827 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,674,006 - 81,675,642 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,675,203 - 81,675,999 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,675,365 - 81,676,354 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102796   ⟹   ENSRNOP00000081485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl975,974,961 - 75,979,297 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116086   ⟹   ENSRNOP00000077527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl975,975,360 - 75,979,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120210   ⟹   ENSRNOP00000091895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl975,974,794 - 75,979,297 (+)Ensembl
RefSeq Acc Id: NM_001128079   ⟹   NP_001121551
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,423,166 - 83,428,411 (+)NCBI
mRatBN7.2975,974,053 - 75,979,298 (+)NCBI
Rnor_6.0981,672,613 - 81,677,977 (+)NCBI
Rnor_5.0981,437,162 - 81,442,528 (+)NCBI
RGSC_v3.4973,731,542 - 73,736,764 (+)RGD
Celera973,547,362 - 73,552,583 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245236   ⟹   XP_006245298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,424,215 - 83,428,410 (+)NCBI
mRatBN7.2975,975,102 - 75,979,298 (+)NCBI
Rnor_6.0981,672,933 - 81,677,979 (+)NCBI
Rnor_5.0981,437,162 - 81,442,528 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083876   ⟹   XP_038939804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,422,817 - 83,428,410 (+)NCBI
mRatBN7.2975,973,694 - 75,979,298 (+)NCBI
RefSeq Acc Id: XM_063267386   ⟹   XP_063123456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,422,787 - 83,428,410 (+)NCBI
RefSeq Acc Id: XM_063267387   ⟹   XP_063123457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,424,199 - 83,428,410 (+)NCBI
RefSeq Acc Id: XM_063267389   ⟹   XP_063123459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,422,755 - 83,428,410 (+)NCBI
RefSeq Acc Id: NP_001121551   ⟸   NM_001128079
- UniProtKB: B1WC24 (UniProtKB/TrEMBL),   F7F6Y7 (UniProtKB/TrEMBL),   A0A8I6ACZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245298   ⟸   XM_006245236
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZS34 (UniProtKB/TrEMBL),   A0A8I6ACZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020646   ⟸   ENSRNOT00000020646
RefSeq Acc Id: XP_038939804   ⟸   XM_039083876
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ACZ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091895   ⟸   ENSRNOT00000120210
Ensembl Acc Id: ENSRNOP00000077527   ⟸   ENSRNOT00000116086
Ensembl Acc Id: ENSRNOP00000081485   ⟸   ENSRNOT00000102796
RefSeq Acc Id: XP_063123459   ⟸   XM_063267389
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123456   ⟸   XM_063267386
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123457   ⟸   XM_063267387
- Peptide Label: isoform X2
Protein Domains
FCP1 homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC24-F1-model_v2 AlphaFold B1WC24 1-261 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696751
Promoter ID:EPDNEW_R7276
Type:initiation region
Name:Ctdsp1_1
Description:CTD small phosphatase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0981,672,817 - 81,672,877EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305629 AgrOrtholog
BioCyc Gene G2FUF-27136 BioCyc
Ensembl Genes ENSRNOG00000015295 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020646.7 UniProtKB/TrEMBL
  ENSRNOT00000102796.1 UniProtKB/TrEMBL
  ENSRNOT00000116086.1 UniProtKB/TrEMBL
  ENSRNOT00000120210.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7375527 IMAGE-MGC_LOAD
  IMAGE:9029838 IMAGE-MGC_LOAD
InterPro Dullard UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
  RNA_Pol_CTD_Phosphatase UniProtKB/TrEMBL
  TIM50 UniProtKB/TrEMBL
KEGG Report rno:363249 UniProtKB/TrEMBL
MGC_CLONE MGC:125181 IMAGE-MGC_LOAD
  MGC:187787 IMAGE-MGC_LOAD
NCBI Gene 363249 ENTREZGENE
PANTHER CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A SMALL PHOSPHATASE 1 UniProtKB/TrEMBL
  DULLARD PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
PhenoGen Ctdsp1 PhenoGen
PROSITE FCP1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015295 RatGTEx
SMART CPDc UniProtKB/TrEMBL
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A8I5Y9K9_RAT UniProtKB/TrEMBL
  A0A8I5ZS34 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACZ1 ENTREZGENE, UniProtKB/TrEMBL
  B1WC24 ENTREZGENE, UniProtKB/TrEMBL
  F7F6Y7 ENTREZGENE, UniProtKB/TrEMBL
  Q3B8P1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Ctdsp1  CTD small phosphatase 1  Ctdsp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ctdsp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1  Ctdsp1_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ctdsp1_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED