Ctdsp1 (CTD small phosphatase 1) - Rat Genome Database

Name: Ctdsp1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ctdsp1 (CTD small phosphatase 1) Rattus norvegicus

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Symbol:

Ctdsp1

Name:

CTD small phosphatase 1

RGD ID:

1305629

Description:

Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle; negative regulation of cell differentiation; and negative regulation of protein phosphorylation. Predicted to be located in nucleoplasm. Orthologous to human CTDSP1 (CTD small phosphatase 1); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; RNA polymerase II transcription pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1; LOC363249

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTDSP1 (CTD small phosphatase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ctdsp1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctdsp1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTDSP1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTDSP1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctdsp1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTDSP1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTDSP1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctdsp1 (CTD small phosphatase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDIPT (CDP-diacylglycerol--inositol 3-phosphatidyltransferase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CTDSP1 (CTD small phosphatase 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ctdsp1 (CTD small phosphatase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ctdsp1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5830	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PSR1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PSR2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	scpl-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctdspl	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctdsp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,422,755 - 83,428,411 (+)	NCBI		GRCr8
mRatBN7.2	9	75,973,694 - 75,979,298 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,973,962 - 75,979,297 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,419,092 - 84,424,337 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,548,036 - 89,553,281 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,934,220 - 87,939,465 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,672,613 - 81,677,979 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,672,758 - 81,677,979 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,437,162 - 81,442,528 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,731,542 - 73,736,764 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,878,323 - 73,884,036 (+)	NCBI
Celera	9	73,547,362 - 73,552,583 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-bromohexadecanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

acrylamide (EXP,ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clofibric acid (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

iron dichloride (ISO)

lead(0) (ISO)

mercury dibromide (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

propanal (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of G1/S transition of mitotic cell cycle (ISO)

negative regulation of neurogenesis (ISO)

negative regulation of neuron differentiation (ISO)

negative regulation of protein phosphorylation (ISO)

protein dephosphorylation (ISO)

regulation of transcription by RNA polymerase II (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

myosin phosphatase activity (IEA)

protein binding (ISO)

RNA polymerase II CTD heptapeptide repeat phosphatase activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Bone morphogenetic proteins signaling pathway (ISO)

RNA polymerase II transcription pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Updating the RNA polymerase CTD code: adding gene-specific layers.	Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	The writers, readers, and functions of the RNA polymerase II C-terminal domain code.	Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
5.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Organization of SCP1 protein molecules within synaptonemal complexes of the rat.	Schmekel K, etal., Exp Cell Res. 1996 Jul 10;226(1):20-30.

Additional References at PubMed

PMID:12477932	PMID:12721286	PMID:17403776	PMID:22210897	PMID:23376485	PMID:23533145

Genomics

Comparative Map Data

Ctdsp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,422,755 - 83,428,411 (+)	NCBI		GRCr8
mRatBN7.2	9	75,973,694 - 75,979,298 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,973,962 - 75,979,297 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,419,092 - 84,424,337 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,548,036 - 89,553,281 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,934,220 - 87,939,465 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,672,613 - 81,677,979 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,672,758 - 81,677,979 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,437,162 - 81,442,528 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,731,542 - 73,736,764 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,878,323 - 73,884,036 (+)	NCBI
Celera	9	73,547,362 - 73,552,583 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

CTDSP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	218,396,351 - 218,405,941 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	218,397,136 - 218,405,941 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	219,261,074 - 219,270,664 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	218,972,722 - 218,978,908 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	219,090,318 - 219,094,653	NCBI
Celera	2	213,031,099 - 213,037,286 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,116,361 - 211,123,788 (+)	NCBI		HuRef
CHM1_1	2	219,269,716 - 219,277,310 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	218,882,480 - 218,892,071 (+)	NCBI		T2T-CHM13v2.0

Ctdsp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	74,430,625 - 74,436,444 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	74,430,668 - 74,436,444 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	74,391,609 - 74,397,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,391,509 - 74,397,285 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	74,438,183 - 74,443,859 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	74,324,806 - 74,330,492 (+)	NCBI		MGSCv36	mm8
Celera	1	74,949,106 - 74,954,751 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	38.54	NCBI

Ctdsp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,968,484 - 14,976,667 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	14,971,276 - 14,976,667 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTDSP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,030,133 - 121,037,379 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,046,174 - 121,052,346 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	105,658,394 - 105,664,571 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,255,827 - 224,262,000 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,254,460 - 224,262,000 (+)	Ensembl	panpan1.1		panPan2

CTDSP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,051,839 - 25,057,506 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,050,267 - 25,056,113 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	25,871,675 - 25,876,792 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,067,383 - 25,072,492 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,067,283 - 25,073,037 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	24,972,928 - 24,978,034 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	24,906,589 - 24,911,706 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	24,926,942 - 24,932,060 (+)	NCBI		UU_Cfam_GSD_1.0

Ctdsp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	174,558,749 - 174,562,368 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	900,439 - 903,622 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	901,357 - 905,149 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTDSP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	120,450,760 - 120,456,871 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	120,450,649 - 120,456,874 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CTDSP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,291,494 - 104,298,982 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	104,293,073 - 104,299,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	95,103,403 - 95,110,514 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctdsp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	6,601,919 - 6,608,552 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	6,603,095 - 6,608,490 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctdsp1
3 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	185
Count of miRNA genes:	117
Interacting mature miRNAs:	141
Transcripts:	ENSRNOT00000020646
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat

Markers in Region

RH141035

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,978,983 - 75,979,183 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,677,663 - 81,677,862	NCBI	Rnor6.0
Rnor_5.0	9	81,442,212 - 81,442,411	UniSTS	Rnor5.0
RGSC_v3.4	9	73,736,450 - 73,736,649	UniSTS	RGSC3.4
Celera	9	73,552,269 - 73,552,468	UniSTS
RH 3.4 Map	9	707.7	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001128079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC093395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020646 ⟹ ENSRNOP00000020646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,973,962 - 75,979,297 (+)	Ensembl
Rnor_6.0 Ensembl	9	81,672,758 - 81,677,979 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,675,364 - 81,676,521 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,672,817 - 81,674,827 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,674,006 - 81,675,642 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,675,203 - 81,675,999 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	81,675,365 - 81,676,354 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102796 ⟹ ENSRNOP00000081485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,974,961 - 75,979,297 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116086 ⟹ ENSRNOP00000077527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,975,360 - 75,979,284 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120210 ⟹ ENSRNOP00000091895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,974,794 - 75,979,297 (+)	Ensembl

RefSeq Acc Id:

NM_001128079 ⟹ NP_001121551

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,423,166 - 83,428,411 (+)	NCBI
mRatBN7.2	9	75,974,053 - 75,979,298 (+)	NCBI
Rnor_6.0	9	81,672,613 - 81,677,977 (+)	NCBI
Rnor_5.0	9	81,437,162 - 81,442,528 (+)	NCBI
RGSC_v3.4	9	73,731,542 - 73,736,764 (+)	RGD
Celera	9	73,547,362 - 73,552,583 (+)	RGD

Sequence:

show sequence

CGCGGGGATCCCTCCCTCCCACCCTCCCCTCCCCCCCGCGCCCCGATTCCGGCCCGAGCCGGGG
GGGAGGCCGGGCGCCGGGGCCAGAGTCCGGCCGGAGCGGAGCGCGCCGGGCCCCATGGACAGCT
CGGCCGTCATTACTCAGATCAGCAAGGAGGAGGCGCGGGGCCCGCTGCGGGGCAAAGGTGACCA
GAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCGGGGCATCCTCCACTCTCTCTTCTGCTGTGTC
TGCCGAGATGATGGGGAGCCCCTGCCTGCCCACAGTGGGGCTCCCCTGCTGGTGGAGGAAAATG
GCGCCATCCCTAAGCATACCCCAGTCCAGTACCTGCTTCCCGAGGTCAAGGCCCAGGACTCAGA
CAAGATCTGCGTTGTCATCGACCTGGACGAGACCCTGGTGCACAGCTCCTTCAAGCCAGTGAAC
AACGCTGACTTCATCATCCCGGTGGAGATTGATGGAGTGGTTCACCAGGTCTATGTACTGAAAC
GGCCCCACGTAGATGAGTTCCTACAGCGAATGGGCGAGCTCTTTGAGTGTGTGTTGTTCACTGC
CAGTCTTGCCAAGTACGCAGACCCTGTAGCTGATCTGCTGGACAAGTGGGGAGCCTTCCGTGCC
AGGCTGTTTCGAGAGTCCTGTGTCTTCCATCGGGGAAACTACGTAAAGGACCTGAGCAGGCTGG
GCCGAGACCTGCGGCGGGTGCTAATCTTAGACAACTCACCCGCCTCATACGTCTTCCATCCAGA
CAATGCCGTTCCAGTGGCCTCGTGGTTTGACAACATGAGTGACACTGAGTTACACGATCTCTTA
CCCTTCTTTGAGCAACTCAGCCGCGTCGACGACGTATACTCAGTGCTCAGACAGCCTAGGCCCG
GGAGCTAGTGAGGTGTCTTGGGGCCAGGACCTGCCCCTCGGCAAGGCCCACCACACCTCTTGCC
AGCAGACTGTGCTGTTAACAAAACCCGAGGGCTATGTCATGTTCATGGCCCTGGGGAAGAGGTG
TCTCCCCTGTCATGTTGCATGGAGGACAGTGAGCCCTTGGGTCCCTATGTCAGTGCCTTCAAAT
TTCTTCCCCTCTTCTCAGGGGACCTGGGGGGCCTGGCCTGCTGCTCCCCACTTCTGTCTTCTCT
TCTCCACACCGCCAGGTTTCTCTGCTGCCAAATTGGGCCTCTTAGCCCCAGTTCTGCTTTGGGG
GGGGGAGGGATAGGGTTTTTGCTGCCCCTTCCCTGTCTGGGAACAGTGGACACCCAAGTGCCTT
GTATAGAACCCTCTTTACTGGTCAGCTTTTCCCAGATCTAGGCTGACCTGAGAGGAACCAATTC
CTCCCCTTCCTCTCCTCCCTCTTGGGTTGATGGTGCCCCGCCAGTGTCTACATGGGAGGGAGAA
GAAGAAAGTCTATTACAGTACACTTGTACAAGAGCTGGGGACCTTCATCAGGGAGGAATGCTCC
CGGTCCAGCTTCTCCAAGGCTGCTCCATATATCCCTTAAGCCCCGTCTCCCCAAAGCCCTGGGG
CTTGGCAGGACGCCCCCACGGTGCCATATAAATATGTATATGTGTATATAGATTTTTAAGGGAA
GGAGAGAGGAAAGGGTGGGAACATTCTTCCCTTGACCCTTCCCTGGGCCCAGAAATTGGGGGAG
GGAGGGAAAGGATTTTTACATTTTTAAAATGACTATTTTCTGAATGGAACAAGCTGGGCTAAGG
GGTCAGGCCCGGTCTTCTGTCTGCTCCCAACCCTTTTACTTTATTCATTCAAAAAACATTTATT
GAGTACCTTCGGTGCCCAGCAGTGAGCTAGTCCCACCGGCTTAGTGGGAGGAGGGTCTCTGCTT
CATCATTGGTGCCTCATCCCTAAACCCCACACTTCACGTGCCTTTAGAGGATCGACAGGAGGTG
GAACCTTTTTGTGGGCCTCAGGAGGTCTCCAAACTTTACCAAGCTGGCTCCTCCTGTCCCAACT
CATCCTCCTTCCCTGTACTCCGTGCAGCCTCCTCCATGGCCCCCTGCTGGCTGGGGGCAGCTCC
CAGGTCTCTGCCAACTCTGACTTCTCTGTTTTTAAAGCCCCTCCCCATACCTGCTGAGTCTGGA
GTTCAAGCCCTTAGGCTCTCTCCCCAGATTATGAGGGTTAAGTGGACCCACAAACAAGTGCCAA
GGGAGTTGGTGAAGGGAGAGGATATGGTTGGCCGGGATTAGATGACCTTCCTAATTAAGTGCCT
TCTCTGTGACCGAGCACCTCCGTGTGATAAGAACTAAAGAGAAAGCTAGACCCCCTACAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245236 ⟹ XP_006245298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,424,215 - 83,428,410 (+)	NCBI
mRatBN7.2	9	75,975,102 - 75,979,298 (+)	NCBI
Rnor_6.0	9	81,672,933 - 81,677,979 (+)	NCBI
Rnor_5.0	9	81,437,162 - 81,442,528 (+)	NCBI

Sequence:

show sequence

AGGGGAGAACGGGACTAGGGGCCGTCCCCGCGCCGCAGTTGCTGCCACTGTCCCGGGCGCGCGC
CTCGGCCCAGCCGGAGCCCCCGCCAGTGGGGAAGTTTGAACTCCGCGAGAGTCTGAGGCGCTGG
GCGGGGCCTGGCGCCACTAGTGCGCTCGCATATGCTTCTAGTAGGGAAACTGAGGCAGGAAGCA
AGCGAGGGGCTAGTAGGCTGCCGATTCCCGGGCGTCGCCCCCTCCCCCAGTTTGGCGCCAATGG
GACTAGAAGGTGGGGGTGAGGCGGCTGCCTGGCCACCCGCTGAGGCTCCGCCCCCTCCAGGCTG
AGGTCTGGAAGGGGTGCGGAGGTGACAGCGGGCTGGGGAGTCTTGCAGAGATCTCCCGCCAACA
CGCAACCAGGTTCCCCCAAACTTGGGCGTCACTCGTGGAGGTGCGGACGACACCCTCGAAGGCA
AAGAGCCGCTAGCCTTGCAAGACAGTCTTGGGGGCCTTGTGTCCAGCTGGGCACGCGGCACCCC
GGCTGCAACAGGCCGGGCCAGTTGGCGTCGGGCCTGTGCACACTCGCACCCACCCTGTAAGGGA
CTCCACCCGCCAATGCGGAGCCCCTGGGGCTCACCCCCCTCTCCCCTGTGTGGATTTCAAAATT
GGGAAGTCACTCGGGGTTTGTCCACCGACCAGTCTTAGCTCTTTTGGCGGGGCTGGAGGCAGAA
AGGGTTAGAGAAGAGGATGCTTGGTGGAGGTAGGTCTGTCAATTAGACAGGCCACTGCCTCTCA
GTAAGTCTAAGGTTGAGACGGGGCGGGGTGAAGGAGGTGGGGCTGGTGGGGCTGACAGCCCTGG
GACACTGGCCTCTGGGCCCAGACTCAATGAGGACTTTGGACTCACTGGGTAGACATTATGGAGG
GAGAGTGGGAGTGGATGATGGGGCCCCGAGCCCTGACGGGCCTGGGCAAGGGCTGCTCAGGTGA
CCAGAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCGGGGCATCCTCCACTCTCTCTTCTGCTGT
GTCTGCCGAGATGATGGGGAGCCCCTGCCTGCCCACAGTGGGGCTCCCCTGCTGGTGGAGGAAA
ATGGCGCCATCCCTAAGCATACCCCAGTCCAGTACCTGCTTCCCGAGGTCAAGGCCCAGGACTC
AGACAAGATCTGCGTTGTCATCGACCTGGACGAGACCCTGGTGCACAGCTCCTTCAAGCCAGTG
AACAACGCTGACTTCATCATCCCGGTGGAGATTGATGGAGTGGTTCACCAGGTCTATGTACTGA
AACGGCCCCACGTAGATGAGTTCCTACAGCGAATGGGCGAGCTCTTTGAGTGTGTGTTGTTCAC
TGCCAGTCTTGCCAAGTACGCAGACCCTGTAGCTGATCTGCTGGACAAGTGGGGAGCCTTCCGT
GCCAGGCTGTTTCGAGAGTCCTGTGTCTTCCATCGGGGAAACTACGTAAAGGACCTGAGCAGGC
TGGGCCGAGACCTGCGGCGGGTGCTAATCTTAGACAACTCACCCGCCTCATACGTCTTCCATCC
AGACAATGCCGTTCCAGTGGCCTCGTGGTTTGACAACATGAGTGACACTGAGTTACACGATCTC
TTACCCTTCTTTGAGCAACTCAGCCGCGTCGACGACGTATACTCAGTGCTCAGACAGCCTAGGC
CCGGGAGCTAGTGAGGTGTCTTGGGGCCAGGACCTGCCCCTCGGCAAGGCCCACCACACCTCTT
GCCAGCAGACTGTGCTGTTAACAAAACCCGAGGGCTATGTCATGTTCATGGCCCTGGGGAAGAG
GTGTCTCCCCTGTCATGTTGCATGGAGGACAGTGAGCCCTTGGGTCCCTATGTCAGTGCCTTCA
AATTTCTTCCCCTCTTCTCAGGGGACCTGGGGGGCCTGGCCTGCTGCTCCCCACTTCTGTCTTC
TCTTCTCCACACCGCCAGGTTTCTCTGCTGCCAAATTGGGCCTCTTAGCCCCAGTTCTGCTTTG
GGGGGGGGAGGGATAGGGTTTTTGCTGCCCCTTCCCTGTCTGGGAACAGTGGACACCCAAGTGC
CTTGTATAGAACCCTCTTTACTGGTCAGCTTTTCCCAGATCTAGGCTGACCTGAGAGGAACCAA
TTCCTCCCCTTCCTCTCCTCCCTCTTGGGTTGATGGTGCCCCGCCAGTGTCTACATGGGAGGGA
GAAGAAGAAAGTCTATTACAGTACACTTGTACAAGAGCTGGGGACCTTCATCAGGGAGGAATGC
TCCCGGTCCAGCTTCTCCAAGGCTGCTCCATATATCCCTTAAGCCCCGTCTCCCCAAAGCCCTG
GGGCTTGGCAGGACGCCCCCACGGTGCCATATAAATATGTATATGTGTATATAGATTTTTAAGG
GAAGGAGAGAGGAAAGGGTGGGAACATTCTTCCCTTGACCCTTCCCTGGGCCCAGAAATTGGGG
GAGGGAGGGAAAGGATTTTTACATTTTTAAAATGACTATTTTCTGAATGGAACAAGCTGGGCTA
AGGGGTCAGGCCCGGTCTTCTGTCTGCTCCCAACCCTTTTACTTTATTCATTCAAAAAACATTT
ATTGAGTACCTTCGGTGCCCAGCAGTGAGCTAGTCCCACCGGCTTAGTGGGAGGAGGGTCTCTG
CTTCATCATTGGTGCCTCATCCCTAAACCCCACACTTCACGTGCCTTTAGAGGATCGACAGGAG
GTGGAACCTTTTTGTGGGCCTCAGGAGGTCTCCAAACTTTACCAAGCTGGCTCCTCCTGTCCCA
ACTCATCCTCCTTCCCTGTACTCCGTGCAGCCTCCTCCATGGCCCCCTGCTGGCTGGGGGCAGC
TCCCAGGTCTCTGCCAACTCTGACTTCTCTGTTTTTAAAGCCCCTCCCCATACCTGCTGAGTCT
GGAGTTCAAGCCCTTAGGCTCTCTCCCCAGATTATGAGGGTTAAGTGGACCCACAAACAAGTGC
CAAGGGAGTTGGTGAAGGGAGAGGATATGGTTGGCCGGGATTAGATGACCTTCCTAATTAAGTG
CCTTCTCTGTGACCGAGCACCTCCGTGTGATAAGAACTAAAGAGAAAGCTAGACCCCCTACTA

hide sequence

RefSeq Acc Id:

XM_039083876 ⟹ XP_038939804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,422,817 - 83,428,410 (+)	NCBI
mRatBN7.2	9	75,973,694 - 75,979,298 (+)	NCBI

RefSeq Acc Id:

XM_063267386 ⟹ XP_063123456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,422,787 - 83,428,410 (+)	NCBI

RefSeq Acc Id:

XM_063267387 ⟹ XP_063123457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,424,199 - 83,428,410 (+)	NCBI

RefSeq Acc Id:

XM_063267389 ⟹ XP_063123459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	83,422,755 - 83,428,410 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001121551	(Get FASTA)	NCBI Sequence Viewer
	XP_006245298	(Get FASTA)	NCBI Sequence Viewer
	XP_038939804	(Get FASTA)	NCBI Sequence Viewer
	XP_063123456	(Get FASTA)	NCBI Sequence Viewer
	XP_063123457	(Get FASTA)	NCBI Sequence Viewer
	XP_063123459	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05904	(Get FASTA)	NCBI Sequence Viewer
	AAI61976	(Get FASTA)	NCBI Sequence Viewer
	EDL75354	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020646.3
	ENSRNOP00000077527.1
	ENSRNOP00000081485.1
	ENSRNOP00000091895.1

RefSeq Acc Id:

NP_001121551 ⟸ NM_001128079

- UniProtKB:

B1WC24 (UniProtKB/TrEMBL), F7F6Y7 (UniProtKB/TrEMBL), A0A8I6ACZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSSAVITQISKEEARGPLRGKGDQKSAVSQKPRSRGILHSLFCCVCRDDGEPLPAHSGAPLLV
EENGAIPKHTPVQYLLPEVKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVY
VLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDL
SRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ
PRPGS

hide sequence

RefSeq Acc Id:	XP_006245298 ⟸ XM_006245236
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZS34 (UniProtKB/TrEMBL), A0A8I6ACZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGEWEWMMGPRALTGLGKGCSGDQKSAVSQKPRSRGILHSLFCCVCRDDGEPLPAHSGAPLLV EENGAIPKHTPVQYLLPEVKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVY VLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDL SRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ PRPGS hide sequence

Ensembl Acc Id:

ENSRNOP00000020646 ⟸ ENSRNOT00000020646

RefSeq Acc Id:	XP_038939804 ⟸ XM_039083876
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ACZ1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091895 ⟸ ENSRNOT00000120210

Ensembl Acc Id:

ENSRNOP00000077527 ⟸ ENSRNOT00000116086

Ensembl Acc Id:

ENSRNOP00000081485 ⟸ ENSRNOT00000102796

RefSeq Acc Id:	XP_063123459 ⟸ XM_063267389
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063123456 ⟸ XM_063267386
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063123457 ⟸ XM_063267387
- Peptide Label:	isoform X2

Protein Domains

FCP1 homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WC24-F1-model_v2	AlphaFold	B1WC24	1-261	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696751

Promoter ID:

EPDNEW_R7276

Type:

initiation region

Name:

Ctdsp1_1

Description:

CTD small phosphatase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	81,672,817 - 81,672,877	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305629	AgrOrtholog
BioCyc Gene	G2FUF-27136	BioCyc
Ensembl Genes	ENSRNOG00000015295	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020646.7	UniProtKB/TrEMBL
	ENSRNOT00000102796.1	UniProtKB/TrEMBL
	ENSRNOT00000116086.1	UniProtKB/TrEMBL
	ENSRNOT00000120210.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1000	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7375527	IMAGE-MGC_LOAD
	IMAGE:9029838	IMAGE-MGC_LOAD
InterPro	Dullard	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	NIF	UniProtKB/TrEMBL
	RNA_Pol_CTD_Phosphatase	UniProtKB/TrEMBL
	TIM50	UniProtKB/TrEMBL
KEGG Report	rno:363249	UniProtKB/TrEMBL
MGC_CLONE	MGC:125181	IMAGE-MGC_LOAD
	MGC:187787	IMAGE-MGC_LOAD
NCBI Gene	363249	ENTREZGENE
PANTHER	CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A SMALL PHOSPHATASE 1	UniProtKB/TrEMBL
	DULLARD PROTEIN PHOSPHATASE	UniProtKB/TrEMBL
Pfam	NIF	UniProtKB/TrEMBL
PhenoGen	Ctdsp1	PhenoGen
PROSITE	FCP1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015295	RatGTEx
SMART	CPDc	UniProtKB/TrEMBL
Superfamily-SCOP	HAD-like_dom	UniProtKB/TrEMBL
UniProt	A0A8I5Y9K9_RAT	UniProtKB/TrEMBL
	A0A8I5ZS34	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ACZ1	ENTREZGENE, UniProtKB/TrEMBL
	B1WC24	ENTREZGENE, UniProtKB/TrEMBL
	F7F6Y7	ENTREZGENE, UniProtKB/TrEMBL
	Q3B8P1_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-12	Ctdsp1	CTD small phosphatase 1	Ctdsp1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Ctdsp1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	Ctdsp1_predicted	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ctdsp1_predicted	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)