CTDSP1 (CTD small phosphatase 1) - Rat Genome Database

Name: CTDSP1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CTDSP1 (CTD small phosphatase 1) Pan paniscus

Analyze

Symbol:

CTDSP1

Name:

CTD small phosphatase 1

RGD ID:

11802311

Description:

ENCODES a protein that exhibits myosin phosphatase activity (inferred); phosphatase activity (inferred); protein serine/threonine phosphatase activity (inferred); INVOLVED IN negative regulation of G1/S transition of mitotic cell cycle (ortholog); negative regulation of neurogenesis (ortholog); negative regulation of neuron differentiation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; RNA polymerase II transcription pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,030,133 - 121,037,379 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,046,174 - 121,052,346 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	105,658,394 - 105,664,571 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,255,827 - 224,262,000 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,254,460 - 224,262,000 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

genetic disease (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of G1/S transition of mitotic cell cycle (IEA,ISO)

negative regulation of neurogenesis (IEA,ISO)

negative regulation of neuron differentiation (IEA,ISO)

negative regulation of protein phosphorylation (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

myosin phosphatase activity (IEA)

phosphatase activity (IEA)

protein binding (ISO)

protein serine/threonine phosphatase activity (IEA)

RNA polymerase II CTD heptapeptide repeat phosphatase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Bone morphogenetic proteins signaling pathway (ISO)

RNA polymerase II transcription pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CTDSP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,030,133 - 121,037,379 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,046,174 - 121,052,346 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	105,658,394 - 105,664,571 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,255,827 - 224,262,000 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,254,460 - 224,262,000 (+)	Ensembl	panpan1.1		panPan2

CTDSP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	218,396,351 - 218,405,941 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	218,397,136 - 218,405,941 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	219,261,074 - 219,270,664 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	218,972,722 - 218,978,908 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	219,090,318 - 219,094,653	NCBI
Celera	2	213,031,099 - 213,037,286 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,116,361 - 211,123,788 (+)	NCBI		HuRef
CHM1_1	2	219,269,716 - 219,277,310 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	218,882,480 - 218,892,071 (+)	NCBI		T2T-CHM13v2.0

Ctdsp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	74,430,625 - 74,436,444 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	74,430,668 - 74,436,444 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	74,391,609 - 74,397,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,391,509 - 74,397,285 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	74,438,183 - 74,443,859 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	74,324,806 - 74,330,492 (+)	NCBI		MGSCv36	mm8
Celera	1	74,949,106 - 74,954,751 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	38.54	NCBI

Ctdsp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,422,755 - 83,428,411 (+)	NCBI		GRCr8
mRatBN7.2	9	75,973,694 - 75,979,298 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,973,962 - 75,979,297 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,419,092 - 84,424,337 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,548,036 - 89,553,281 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,934,220 - 87,939,465 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,672,613 - 81,677,979 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,672,758 - 81,677,979 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,437,162 - 81,442,528 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,731,542 - 73,736,764 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,878,323 - 73,884,036 (+)	NCBI
Celera	9	73,547,362 - 73,552,583 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Ctdsp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,968,484 - 14,976,667 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	14,971,276 - 14,976,667 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTDSP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,051,839 - 25,057,506 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,050,267 - 25,056,113 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	25,871,675 - 25,876,792 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,067,383 - 25,072,492 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,067,283 - 25,073,037 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	24,972,928 - 24,978,034 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	24,906,589 - 24,911,706 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	24,926,942 - 24,932,060 (+)	NCBI		UU_Cfam_GSD_1.0

Ctdsp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	174,558,749 - 174,562,368 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	900,439 - 903,622 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	901,357 - 905,149 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTDSP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	120,450,760 - 120,456,871 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	120,450,649 - 120,456,874 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CTDSP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,291,494 - 104,298,982 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	104,293,073 - 104,299,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	95,103,403 - 95,110,514 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctdsp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	6,601,919 - 6,608,552 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	6,603,095 - 6,608,490 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034955119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034955120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055109087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055109088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000064028 ⟹ ENSPPAP00000041106

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	224,254,460 - 224,260,485 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000064031 ⟹ ENSPPAP00000041109

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	224,255,661 - 224,262,000 (+)	Ensembl

RefSeq Acc Id:

XM_003818618 ⟹ XP_003818666

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,030,148 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,276 - 121,052,346 (+)	NCBI
Mhudiblu_PPA_v0	2B	105,658,394 - 105,664,571 (+)	NCBI
PanPan1.1	2B	224,255,827 - 224,262,000 (+)	NCBI

Sequence:

show sequence

AGCCGCGCCGGTCCCAGAAGTGGCGAAAGCCACAGCCGAGTTCAGGTCACGCCGAAGCCGTTGC
CCTTTTAAGGGGAGCCTTGAAACGGCGCCTGGGTTCCATGTTTGCATCCGCCTCGCGGGAAGGA
AACTCCATGTTGTAACAAAGTTTCCTCCGCACCCCCTCCCTCCCCCTCCCCCCTAGAACCTGGC
TCCCCTCCCCTCCGGAGCTCGCGGGGATCCCTCCCTCCCACCCCTCCCCTCCCCCCCGCCGCCC
CGATTCCGGCCCCAGCCGGGGGGAGGCCGGGCGCCCGGGCCAGAGTCCGGCCGGAGCGGAGCGC
GCCCGGCCCCATGGACAGCTCGGCCGTCATTACTCAGATCAGCAAGGAGGAGGCTCGGGGCCCG
CTGCGGGGCAAAGGTGACCAGAAGTCAGCAGCTTCCCAGAAGCCCCGAAGCCGGGGCATCCTCC
ACTCACTCTTCTGCTGTGTCTGCCGGGATGATGGGGAGGCCCTGCCTGCTCACAGCGGGGCGCC
CCTGCTTGTGGAGGAGAATGGCGCCATCCCTAAGCAGACCCCAGTCCAATACCTGCTCCCTGAG
GCCAAGGCCCAGGACTCAGACAAGATCTGCGTGGTCATCGACCTGGACGAGACCCTGGTGCACA
GCTCCTTCAAGCCAGTGAACAACGCGGACTTCATCATCCCTGTGGAGATTGATGGGGTGGTCCA
CCAGGTCTACGTGTTGAAGCGGCCTCACGTGGATGAGTTCCTGCAGCGAATGGGCGAGCTCTTT
GAATGTGTGCTGTTCACTGCTAGCCTCGCCAAGTACGCAGACCCAGTAGCTGACCTGCTGGACA
AATGGGGGGCCTTCCGGGCCCGGCTGTTTCGAGAGTCCTGCGTCTTCCACCGGGGGAACTATGT
GAAGGACCTGAGCCGGTTGGGTCGAGACCTGCGGCGGGTGCTCATCCTGGACAACTCACCTGCC
TCCTATGTCTTCCATCCAGACAATGCTGTACCGGTGGCCTCGTGGTTTGACAACATGAGTGACA
CAGAGCTCCACGACCTCCTCCCCTTCTTCGAGCAACTCAGCCGTGTGGACGACGTGTACTCAGT
GCTCAGGCAGCCACGGCCAGGGAGCTAGTGAGGGTGATGGGGCCAGGACCTGCCCCTGACCAAT
GATACCCACACCTCCTCCCAGGAAGATTGCCCAGGCCTTTGTTAGGAAAACCCATGGGCCGCCG
CCACACTCAGTGCCATGGGGAAGCGGGCGTCTCCCCCACCAGCCCCACCAGGCGGTGTAGGGGC
AGCAGGCTGCACTGAGGACCGTGAGCTCCAGGCCCCGTGTCAGTGCCTTCAAACCTCCTCCCCT
ATTCTCAGGGGACCTGGGGGGCCCTGCCTGCTGCTCCCTTTTTCTGTCTCTGTCCATGCTGCCA
TGTTTCTCTGCTGCCAAATTGGGCCCCTTGGCCCCTTCCGGTTCTGCTTCCTGGGGGCAGGGTT
CCTGCCTTGGACCCCCAGTCTGGGAACGGTGGACATCAAGTGCCTTGCATAGAGCCCCCTCTTC
CCCGCCCAGCTTTCCCAGGGGCACAGCTCTAGGCTGGGAGGGGAGAACCAGCCCCTCCCCCTGC
CCCACCTCCTCCCTTGGGACTGAGAGGGCCCCTACCAACCTTTGCCTCTGCCTTGGAGGCAGGG
GAGGTCTGTTACCACTGGGGAAGGCAGCAGGAGTCTGTCCTTCAGGCCCCACAGTGCAGCTTCT
CCAGGGCCGACAGCTGAGGGCTGCTCCCTGCATCATCCAAGCAATGACCTCAGACTTCTGCCTT
TACCAGCCCTGGGGCTTGGCTCCCCCAGCTCTGAGCGTGGGGGCATAGGCAGGACCCCCCTTGT
GGTGCCATATAAATATGTACATGTGTATATAGATTTTTAGGGGAAGGAGAGAGGGAAGGGTCAG
GGTAGAGACACCCCTCCCTTGCCCCTTTCCTGGGCCCAGAAGTTGGGGGGAGGGAGGGAAAGGA
TTTTTACATTTTTTAAACTGCTATTTTCTGAATGGAACAAGCTGGGCCAAGGGGCCCAGGCCCT
GTCCTCTGTCCCTCACACCCCTTTGCTCCGTTCGTTCATTCAAAAAAACATTTCTTGAGCACCT
TCTGTGCCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGTGGGGGGTCTCTACGCCAGCTCA
TCAGTGCCTCCTTGCCTATCCTTCACCGGTGCCTTTGGGAGATCTGTAGGAGGTGGGACCTTCT
GTGGGGTTTGGGGATCTCCAGGAAGCCCGACCAAGCTGTCCCCTTCCCCTGTGCCAACCCATCC
CCTACAGCCCCCTGCCTGATCCCCTGCTGGCTGGGGGCAGCTCCCAGGATATCCTGCCTTCCAA
CTGTTTCTGAAGCCCCTCCTCCTAACATGGCGATTCCGGAGGTCAAGGCCTTGGGCTCTCCCCA
GGGTCTAACGGTTAAGGGGACCCACATACCAGTGCCAAGGGGGATGTCAAGTGGTGATGTCGTT
GTGCTCCCCTCCCCCAGAGCGGGTGGCGGGGGGTGAATATGGTTGGCCTGCATCAGGTGGCCTT
CCCATTTAAGTGCCTTCTCTGTGACTGAGAGCCCTAGTGTGATGAGAACTAAAGAGAAAGCCAG
ACCCCTA

hide sequence

RefSeq Acc Id:

XM_008971939 ⟹ XP_008970187

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,030,133 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,276 - 121,052,346 (+)	NCBI
Mhudiblu_PPA_v0	2B	105,658,507 - 105,664,571 (+)	NCBI
PanPan1.1	2B	224,255,827 - 224,262,000 (+)	NCBI

Sequence:

show sequence

AGCCGCGCCGGTCCCAGAAGTGGCGAAAGCCACAGCCGAGTTCAGGTCACGCCGAAGCCGTTGC
CCTTTTAAGGGGAGCCTTGAAACGGCGCCTGGGTTCCATGTTTGCATCCGCCTCGCGGGAAGGA
AACTCCATGTTGTAACAAAGTTTCCTCCGCACCCCCTCCCTCCCCCTCCCCCCTAGAACCTGGC
TCCCCTCCCCTCCGGAGCTCGCGGGGATCCCTCCCTCCCACCCCTCCCCTCCCCCCCGCCGCCC
CGATTCCGGCCCCAGCCGGGGGGAGGCCGGGCGCCCGGGCCAGAGTCCGGCCGGAGCGGAGCGC
GCCCGGCCCCATGGACAGCTCGGCCGTCATTACTCAGATCAGCAAGGAGGAGGCTCGGGGCCCG
CTGCGGGGCAAAGGTGACCAGAAGTCAGCAGCTTCCCAGAAGCCCCGAAGCCGGGGCATCCTCC
ACTCACTCTTCTGCTGTGTCTGCCGGGATGATGGGGAGGCCCTGCCTGCTCACAGCGGGGCGCC
CCTGCTTGTGGAGGAGAATGGCGCCATCCCTAAGACCCCAGTCCAATACCTGCTCCCTGAGGCC
AAGGCCCAGGACTCAGACAAGATCTGCGTGGTCATCGACCTGGACGAGACCCTGGTGCACAGCT
CCTTCAAGCCAGTGAACAACGCGGACTTCATCATCCCTGTGGAGATTGATGGGGTGGTCCACCA
GGTCTACGTGTTGAAGCGGCCTCACGTGGATGAGTTCCTGCAGCGAATGGGCGAGCTCTTTGAA
TGTGTGCTGTTCACTGCTAGCCTCGCCAAGTACGCAGACCCAGTAGCTGACCTGCTGGACAAAT
GGGGGGCCTTCCGGGCCCGGCTGTTTCGAGAGTCCTGCGTCTTCCACCGGGGGAACTATGTGAA
GGACCTGAGCCGGTTGGGTCGAGACCTGCGGCGGGTGCTCATCCTGGACAACTCACCTGCCTCC
TATGTCTTCCATCCAGACAATGCTGTACCGGTGGCCTCGTGGTTTGACAACATGAGTGACACAG
AGCTCCACGACCTCCTCCCCTTCTTCGAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCT
CAGGCAGCCACGGCCAGGGAGCTAGTGAGGGTGATGGGGCCAGGACCTGCCCCTGACCAATGAT
ACCCACACCTCCTCCCAGGAAGATTGCCCAGGCCTTTGTTAGGAAAACCCATGGGCCGCCGCCA
CACTCAGTGCCATGGGGAAGCGGGCGTCTCCCCCACCAGCCCCACCAGGCGGTGTAGGGGCAGC
AGGCTGCACTGAGGACCGTGAGCTCCAGGCCCCGTGTCAGTGCCTTCAAACCTCCTCCCCTATT
CTCAGGGGACCTGGGGGGCCCTGCCTGCTGCTCCCTTTTTCTGTCTCTGTCCATGCTGCCATGT
TTCTCTGCTGCCAAATTGGGCCCCTTGGCCCCTTCCGGTTCTGCTTCCTGGGGGCAGGGTTCCT
GCCTTGGACCCCCAGTCTGGGAACGGTGGACATCAAGTGCCTTGCATAGAGCCCCCTCTTCCCC
GCCCAGCTTTCCCAGGGGCACAGCTCTAGGCTGGGAGGGGAGAACCAGCCCCTCCCCCTGCCCC
ACCTCCTCCCTTGGGACTGAGAGGGCCCCTACCAACCTTTGCCTCTGCCTTGGAGGCAGGGGAG
GTCTGTTACCACTGGGGAAGGCAGCAGGAGTCTGTCCTTCAGGCCCCACAGTGCAGCTTCTCCA
GGGCCGACAGCTGAGGGCTGCTCCCTGCATCATCCAAGCAATGACCTCAGACTTCTGCCTTTAC
CAGCCCTGGGGCTTGGCTCCCCCAGCTCTGAGCGTGGGGGCATAGGCAGGACCCCCCTTGTGGT
GCCATATAAATATGTACATGTGTATATAGATTTTTAGGGGAAGGAGAGAGGGAAGGGTCAGGGT
AGAGACACCCCTCCCTTGCCCCTTTCCTGGGCCCAGAAGTTGGGGGGAGGGAGGGAAAGGATTT
TTACATTTTTTAAACTGCTATTTTCTGAATGGAACAAGCTGGGCCAAGGGGCCCAGGCCCTGTC
CTCTGTCCCTCACACCCCTTTGCTCCGTTCGTTCATTCAAAAAAACATTTCTTGAGCACCTTCT
GTGCCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGTGGGGGGTCTCTACGCCAGCTCATCA
GTGCCTCCTTGCCTATCCTTCACCGGTGCCTTTGGGAGATCTGTAGGAGGTGGGACCTTCTGTG
GGGTTTGGGGATCTCCAGGAAGCCCGACCAAGCTGTCCCCTTCCCCTGTGCCAACCCATCCCCT
ACAGCCCCCTGCCTGATCCCCTGCTGGCTGGGGGCAGCTCCCAGGATATCCTGCCTTCCAACTG
TTTCTGAAGCCCCTCCTCCTAACATGGCGATTCCGGAGGTCAAGGCCTTGGGCTCTCCCCAGGG
TCTAACGGTTAAGGGGACCCACATACCAGTGCCAAGGGGGATGTCAAGTGGTGATGTCGTTGTG
CTCCCCTCCCCCAGAGCGGGTGGCGGGGGGTGAATATGGTTGGCCTGCATCAGGTGGCCTTCCC
ATTTAAGTGCCTTCTCTGTGACTGAGAGCCCTAGTGTGATGAGAACTAAAGAGAAAGCCAGACC
CCTA

hide sequence

RefSeq Acc Id:

XM_034955119 ⟹ XP_034811010

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,620 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,585 - 121,052,346 (+)	NCBI
Mhudiblu_PPA_v0	2B	105,658,813 - 105,664,571 (+)	NCBI

RefSeq Acc Id:

XM_034955120 ⟹ XP_034811011

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,621 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,586 - 121,052,346 (+)	NCBI
Mhudiblu_PPA_v0	2B	105,658,814 - 105,664,571 (+)	NCBI

RefSeq Acc Id:

XM_055109087 ⟹ XP_054965062

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,131 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,174 - 121,050,688 (+)	NCBI

RefSeq Acc Id:

XM_055109088 ⟹ XP_054965063

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,139 - 121,037,379 (+)	NCBI
NHGRI_mPanPan1	2B	121,046,186 - 121,050,687 (+)	NCBI

RefSeq Acc Id:

XM_063595279 ⟹ XP_063451349

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,611 - 121,037,379 (+)	NCBI

RefSeq Acc Id:

XM_063595280 ⟹ XP_063451350

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,031,612 - 121,037,379 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003818666	(Get FASTA)	NCBI Sequence Viewer
	XP_008970187	(Get FASTA)	NCBI Sequence Viewer
	XP_034811010	(Get FASTA)	NCBI Sequence Viewer
	XP_034811011	(Get FASTA)	NCBI Sequence Viewer
	XP_054965062	(Get FASTA)	NCBI Sequence Viewer
	XP_054965063	(Get FASTA)	NCBI Sequence Viewer
	XP_063451349	(Get FASTA)	NCBI Sequence Viewer
	XP_063451350	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000041106
	ENSPPAP00000041106.1
	ENSPPAP00000041109
	ENSPPAP00000041109.1

RefSeq Acc Id:	XP_003818666 ⟸ XM_003818618
- Peptide Label:	isoform X7
- UniProtKB:	A0A2R9CGR7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGAPLLV EENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVY VLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDL SRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ PRPGS hide sequence

RefSeq Acc Id:

XP_008970187 ⟸ XM_008971939

- Peptide Label:

isoform X8

- Sequence:

show sequence

MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFCCVCRDDGEALPAHSGAPLLV
EENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYV
LKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLS
RLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQP
RPGS

hide sequence

RefSeq Acc Id:	XP_034811010 ⟸ XM_034955119
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034811011 ⟸ XM_034955120
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSPPAP00000041109 ⟸ ENSPPAT00000064031

RefSeq Acc Id:

ENSPPAP00000041106 ⟸ ENSPPAT00000064028

RefSeq Acc Id:	XP_054965062 ⟸ XM_055109087
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_054965063 ⟸ XM_055109088
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063451349 ⟸ XM_063595279
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063451350 ⟸ XM_063595280
- Peptide Label:	isoform X2

Protein Domains

FCP1 homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000043173	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000064028.1	UniProtKB/TrEMBL
	ENSPPAT00000064031.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1000	UniProtKB/TrEMBL
InterPro	Dullard_phosphatase	UniProtKB/TrEMBL
	FCP1_dom	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	RNA_Pol_CTD_Phosphatase	UniProtKB/TrEMBL
KEGG Report	pps:100985668	UniProtKB/TrEMBL
NCBI Gene	CTDSP1	ENTREZGENE
PANTHER	CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A SMALL PHOSPHATASE 1	UniProtKB/TrEMBL
	DULLARD PROTEIN PHOSPHATASE	UniProtKB/TrEMBL
Pfam	NIF	UniProtKB/TrEMBL
PROSITE	FCP1	UniProtKB/TrEMBL
SMART	CPDc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56784	UniProtKB/TrEMBL
UniProt	A0A2R9CGK4_PANPA	UniProtKB/TrEMBL
	A0A2R9CGR7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)