Limch1 (LIM and calponin homology domains 1) - Rat Genome Database

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Gene: Limch1 (LIM and calponin homology domains 1) Rattus norvegicus
Analyze
Symbol: Limch1
Name: LIM and calponin homology domains 1
RGD ID: 1305269
Description: Predicted to enable myosin II head/neck binding activity. Predicted to be involved in several processes, including cytoplasmic actin-based contraction involved in cell motility; positive regulation of stress fiber assembly; and regulation of focal adhesion assembly. Predicted to be part of myosin II complex. Predicted to be active in stress fiber. Orthologous to human LIMCH1 (LIM and calponin homology domains 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LIM and calponin homology domains-containing protein 1; LOC305332; RGD1305269; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,466,433 - 41,779,477 (-)NCBIGRCr8
mRatBN7.21441,112,579 - 41,425,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,458,625 - 41,770,890 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,758,712 - 43,070,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,239,523 - 41,551,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,760,363 - 43,072,976 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,762,587 - 43,072,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,558,732 - 42,868,387 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,722,254 - 44,049,555 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11443,681,141 - 44,052,100 (-)NCBI
Celera1440,270,045 - 40,579,190 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
etoposide  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zinc dichloride  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17291445   PMID:20607275   PMID:23106098   PMID:24625528   PMID:28228547   PMID:30361391   PMID:35352799  


Genomics

Comparative Map Data
Limch1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,466,433 - 41,779,477 (-)NCBIGRCr8
mRatBN7.21441,112,579 - 41,425,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,458,625 - 41,770,890 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,758,712 - 43,070,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,239,523 - 41,551,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,760,363 - 43,072,976 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,762,587 - 43,072,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,558,732 - 42,868,387 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,722,254 - 44,049,555 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11443,681,141 - 44,052,100 (-)NCBI
Celera1440,270,045 - 40,579,190 (-)NCBICelera
Cytogenetic Map14p11NCBI
LIMCH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38441,359,607 - 41,700,044 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl441,359,607 - 41,700,044 (+)EnsemblGRCh38hg38GRCh38
GRCh37441,361,624 - 41,702,061 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36441,057,561 - 41,395,767 (+)NCBINCBI36Build 36hg18NCBI36
Celera441,806,095 - 42,146,075 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef440,684,478 - 41,024,427 (+)NCBIHuRef
CHM1_1441,363,356 - 41,702,595 (+)NCBICHM1_1
T2T-CHM13v2.0441,333,394 - 41,673,808 (+)NCBIT2T-CHM13v2.0
Limch1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,903,232 - 67,214,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,903,170 - 67,214,501 (+)EnsemblGRCm39 Ensembl
GRCm38566,745,889 - 67,057,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl566,745,827 - 67,057,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,137,079 - 67,448,398 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,025,084 - 67,335,232 (+)NCBIMGSCv36mm8
Celera564,048,465 - 64,361,964 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map535.95NCBI
Limch1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,983,842 - 6,305,014 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,984,027 - 6,305,014 (-)NCBIChiLan1.0ChiLan1.0
LIMCH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2341,545,334 - 41,884,903 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1441,738,614 - 42,078,297 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0435,685,904 - 36,025,582 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1441,533,508 - 41,873,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl441,533,560 - 41,873,694 (+)Ensemblpanpan1.1panPan2
LIMCH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,518,653 - 38,816,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,518,644 - 38,814,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,495,198 - 38,793,400 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,008,734 - 39,307,552 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,008,727 - 39,306,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,699,406 - 38,997,408 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,809,648 - 39,105,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01339,284,402 - 39,582,653 (+)NCBIUU_Cfam_GSD_1.0
Limch1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,365,504 - 37,677,692 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364828,620,858 - 8,930,495 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364828,620,543 - 8,932,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMCH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl832,433,318 - 32,792,546 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1832,433,035 - 32,792,553 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2834,048,380 - 34,408,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIMCH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,656,502 - 8,994,669 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl278,653,600 - 8,994,634 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,972,000 - 55,314,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Limch1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476125,382,274 - 25,578,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476125,375,501 - 25,706,756 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Limch1
1658 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:156
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000064263
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
D14Rat15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,275,590 - 41,275,734 (+)MAPPERmRatBN7.2
Rnor_6.01442,924,142 - 42,924,285NCBIRnor6.0
Rnor_5.01442,722,129 - 42,722,272UniSTSRnor5.0
RGSC_v3.41443,898,016 - 43,898,159UniSTSRGSC3.4
RGSC_v3.41443,898,015 - 43,898,159RGDRGSC3.4
RGSC_v3.11443,900,406 - 43,900,550RGD
Celera1440,431,554 - 40,431,697UniSTS
RH 2.0 Map14451.1RGD
SHRSP x BN Map1428.3RGD
Cytogenetic Map14p11UniSTS
D14Got51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,366,647 - 41,366,913 (+)MAPPERmRatBN7.2
Rnor_6.01443,014,455 - 43,014,718NCBIRnor6.0
Rnor_5.01442,811,195 - 42,811,458UniSTSRnor5.0
RGSC_v3.41443,991,314 - 43,991,578RGDRGSC3.4
RGSC_v3.41443,991,315 - 43,991,578UniSTSRGSC3.4
RGSC_v3.11443,993,705 - 43,993,969RGD
Celera1440,522,492 - 40,522,755UniSTS
RH 2.0 Map14447.9RGD
Cytogenetic Map14p11UniSTS
SHGC-68207  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,114,959 - 41,115,051 (+)MAPPERmRatBN7.2
Rnor_6.01442,762,744 - 42,762,835NCBIRnor6.0
Rnor_5.01442,561,113 - 42,561,204UniSTSRnor5.0
RGSC_v3.41443,724,637 - 43,724,728UniSTSRGSC3.4
Celera1440,270,202 - 40,270,293UniSTS
Cytogenetic Map14p11UniSTS
RH45623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,376,531 - 41,376,709 (+)MAPPERmRatBN7.2
Rnor_6.01443,024,337 - 43,024,514NCBIRnor6.0
Rnor_5.01442,821,077 - 42,821,254UniSTSRnor5.0
RGSC_v3.41444,001,195 - 44,001,372UniSTSRGSC3.4
Celera1440,532,390 - 40,532,567UniSTS
Cytogenetic Map14p11UniSTS
RH133758  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,158,440 - 41,158,621 (+)MAPPERmRatBN7.2
Rnor_6.01442,805,924 - 42,806,104NCBIRnor6.0
Rnor_5.01442,604,687 - 42,604,867UniSTSRnor5.0
RGSC_v3.41443,768,803 - 43,768,983UniSTSRGSC3.4
Celera1440,313,187 - 40,313,367UniSTS
Cytogenetic Map14p11UniSTS
RH142364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,114,655 - 41,114,810 (+)MAPPERmRatBN7.2
Rnor_6.01442,762,440 - 42,762,594NCBIRnor6.0
Rnor_5.01442,560,809 - 42,560,963UniSTSRnor5.0
RGSC_v3.41443,724,333 - 43,724,487UniSTSRGSC3.4
Celera1440,269,898 - 40,270,052UniSTS
Cytogenetic Map14p11UniSTS
BE102897  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,152,760 - 41,152,942 (+)MAPPERmRatBN7.2
Rnor_6.01442,800,244 - 42,800,425NCBIRnor6.0
Rnor_5.01442,599,007 - 42,599,188UniSTSRnor5.0
RGSC_v3.41443,763,123 - 43,763,304UniSTSRGSC3.4
Celera1440,307,563 - 40,307,744UniSTS
Cytogenetic Map14p11UniSTS
BI301572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,358,346 - 41,358,544 (+)MAPPERmRatBN7.2
Rnor_6.01443,005,828 - 43,006,025NCBIRnor6.0
Rnor_5.01442,804,091 - 42,804,288UniSTSRnor5.0
RGSC_v3.41443,983,239 - 43,983,436UniSTSRGSC3.4
Celera1440,514,158 - 40,514,355UniSTS
Cytogenetic Map14p11UniSTS
RH137678  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,423,717 - 41,423,933 (+)MAPPERmRatBN7.2
Rnor_6.01443,071,581 - 43,071,796NCBIRnor6.0
Rnor_5.01442,866,991 - 42,867,206UniSTSRnor5.0
RGSC_v3.41444,048,293 - 44,048,508UniSTSRGSC3.4
Celera1440,577,928 - 40,578,143UniSTS
Cytogenetic Map14p11UniSTS
RH138802  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,113,740 - 41,113,898 (+)MAPPERmRatBN7.2
Rnor_6.01442,761,525 - 42,761,682NCBIRnor6.0
Rnor_5.01442,559,894 - 42,560,051UniSTSRnor5.0
RGSC_v3.41443,723,418 - 43,723,575UniSTSRGSC3.4
Celera1440,268,983 - 40,269,140UniSTS
Cytogenetic Map14p11UniSTS
AI013730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21441,115,246 - 41,115,426 (+)MAPPERmRatBN7.2
Rnor_6.01442,763,031 - 42,763,210NCBIRnor6.0
Rnor_5.01442,561,400 - 42,561,579UniSTSRnor5.0
RGSC_v3.41443,724,924 - 43,725,103UniSTSRGSC3.4
Celera1440,270,489 - 40,270,668UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ226534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064263   ⟹   ENSRNOP00000063345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)Ensembl
Rnor_6.0 Ensembl1442,762,587 - 43,072,843 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095221   ⟹   ENSRNOP00000076732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097408   ⟹   ENSRNOP00000097815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,198,052 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100682   ⟹   ENSRNOP00000096454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,120,773 - 41,282,803 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103342   ⟹   ENSRNOP00000093427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114959   ⟹   ENSRNOP00000093239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118493   ⟹   ENSRNOP00000087540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,114,803 - 41,425,191 (-)Ensembl
RefSeq Acc Id: NM_001191678   ⟹   NP_001178607
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
Rnor_6.01442,762,587 - 43,072,843 (-)NCBI
Rnor_5.01442,558,732 - 42,868,387 (-)NCBI
Celera1440,270,045 - 40,579,190 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001401560   ⟹   NP_001388489
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401561   ⟹   NP_001388490
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401562   ⟹   NP_001388491
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401563   ⟹   NP_001388492
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401564   ⟹   NP_001388493
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401565   ⟹   NP_001388494
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401566   ⟹   NP_001388495
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401567   ⟹   NP_001388496
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,551,886 (-)NCBI
mRatBN7.21441,112,579 - 41,198,034 (-)NCBI
RefSeq Acc Id: NM_001401568   ⟹   NP_001388497
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,623,240 (-)NCBI
mRatBN7.21441,112,579 - 41,269,390 (-)NCBI
RefSeq Acc Id: NM_001401569   ⟹   NP_001388498
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401570   ⟹   NP_001388499
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401572   ⟹   NP_001388501
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401573   ⟹   NP_001388502
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401574   ⟹   NP_001388503
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401575   ⟹   NP_001388504
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401577   ⟹   NP_001388506
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,778,837 (-)NCBI
mRatBN7.21441,112,579 - 41,425,001 (-)NCBI
RefSeq Acc Id: NM_001401578   ⟹   NP_001388507
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,551,886 (-)NCBI
mRatBN7.21441,112,579 - 41,198,034 (-)NCBI
RefSeq Acc Id: NM_001401579   ⟹   NP_001388508
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,306 (-)NCBI
mRatBN7.21441,112,579 - 41,198,454 (-)NCBI
RefSeq Acc Id: NM_001401580   ⟹   NP_001388509
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,551,886 (-)NCBI
mRatBN7.21441,112,579 - 41,198,034 (-)NCBI
RefSeq Acc Id: XM_063273085   ⟹   XP_063129155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273086   ⟹   XP_063129156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273087   ⟹   XP_063129157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273088   ⟹   XP_063129158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273089   ⟹   XP_063129159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273090   ⟹   XP_063129160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273091   ⟹   XP_063129161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273092   ⟹   XP_063129162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273093   ⟹   XP_063129163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,779,477 (-)NCBI
RefSeq Acc Id: XM_063273094   ⟹   XP_063129164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273095   ⟹   XP_063129165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273096   ⟹   XP_063129166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273097   ⟹   XP_063129167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273098   ⟹   XP_063129168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273099   ⟹   XP_063129169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,552,018 (-)NCBI
RefSeq Acc Id: XM_063273100   ⟹   XP_063129170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,537,853 (-)NCBI
RefSeq Acc Id: XM_063273101   ⟹   XP_063129171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,466,433 - 41,537,849 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001178607 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388489 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388490 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388491 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388492 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388493 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388494 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388495 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388496 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388497 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388498 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388499 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388501 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388502 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388503 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388504 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388506 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388509 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129155 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129156 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129157 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129158 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129160 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129161 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129162 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129164 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129165 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129166 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129167 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129168 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129169 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129170 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129171 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063345.3
  ENSRNOP00000076732.1
  ENSRNOP00000087540.1
  ENSRNOP00000093239.1
  ENSRNOP00000093427.1
  ENSRNOP00000096454.1
  ENSRNOP00000097815.1
RefSeq Acc Id: NP_001178607   ⟸   NM_001191678
- Peptide Label: isoform l
- UniProtKB: A0A8I6ASI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063345   ⟸   ENSRNOT00000064263
Ensembl Acc Id: ENSRNOP00000093239   ⟸   ENSRNOT00000114959
Ensembl Acc Id: ENSRNOP00000096454   ⟸   ENSRNOT00000100682
Ensembl Acc Id: ENSRNOP00000097815   ⟸   ENSRNOT00000097408
Ensembl Acc Id: ENSRNOP00000093427   ⟸   ENSRNOT00000103342
Ensembl Acc Id: ENSRNOP00000076732   ⟸   ENSRNOT00000095221
Ensembl Acc Id: ENSRNOP00000087540   ⟸   ENSRNOT00000118493
RefSeq Acc Id: NP_001388506   ⟸   NM_001401577
- Peptide Label: isoform q
RefSeq Acc Id: NP_001388501   ⟸   NM_001401572
- Peptide Label: isoform m
RefSeq Acc Id: NP_001388502   ⟸   NM_001401573
- Peptide Label: isoform n
- UniProtKB: A0A8I6A611 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388504   ⟸   NM_001401575
- Peptide Label: isoform p
RefSeq Acc Id: NP_001388503   ⟸   NM_001401574
- Peptide Label: isoform o
RefSeq Acc Id: NP_001388499   ⟸   NM_001401570
- Peptide Label: isoform k
- UniProtKB: F1M392 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388498   ⟸   NM_001401569
- Peptide Label: isoform j
RefSeq Acc Id: NP_001388495   ⟸   NM_001401566
- Peptide Label: isoform g
- UniProtKB: A0A8I6AJT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388493   ⟸   NM_001401564
- Peptide Label: isoform e
RefSeq Acc Id: NP_001388492   ⟸   NM_001401563
- Peptide Label: isoform d
RefSeq Acc Id: NP_001388490   ⟸   NM_001401561
- Peptide Label: isoform b
RefSeq Acc Id: NP_001388494   ⟸   NM_001401565
- Peptide Label: isoform f
RefSeq Acc Id: NP_001388491   ⟸   NM_001401562
- Peptide Label: isoform c
RefSeq Acc Id: NP_001388489   ⟸   NM_001401560
- Peptide Label: isoform a
RefSeq Acc Id: NP_001388497   ⟸   NM_001401568
- Peptide Label: isoform i
RefSeq Acc Id: NP_001388508   ⟸   NM_001401579
- Peptide Label: isoform s
RefSeq Acc Id: NP_001388507   ⟸   NM_001401578
- Peptide Label: isoform r
RefSeq Acc Id: NP_001388496   ⟸   NM_001401567
- Peptide Label: isoform h
RefSeq Acc Id: NP_001388509   ⟸   NM_001401580
- Peptide Label: isoform s
RefSeq Acc Id: XP_063129163   ⟸   XM_063273093
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063129161   ⟸   XM_063273091
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063129162   ⟸   XM_063273092
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063129158   ⟸   XM_063273088
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063129159   ⟸   XM_063273089
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129160   ⟸   XM_063273090
- Peptide Label: isoform X6
- UniProtKB: A0A8I5XVC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129157   ⟸   XM_063273087
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129155   ⟸   XM_063273085
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129156   ⟸   XM_063273086
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129169   ⟸   XM_063273099
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063129168   ⟸   XM_063273098
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063129165   ⟸   XM_063273095
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063129167   ⟸   XM_063273097
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063129166   ⟸   XM_063273096
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063129164   ⟸   XM_063273094
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063129170   ⟸   XM_063273100
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063129171   ⟸   XM_063273101
- Peptide Label: isoform X17
Protein Domains
Calponin-homology (CH)   LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M392-F1-model_v2 AlphaFold F1M392 1-1085 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699306
Promoter ID:EPDNEW_R9831
Type:single initiation site
Name:Limch1_1
Description:LIM and calponin homology domains 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01443,072,864 - 43,072,924EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305269 AgrOrtholog
BioCyc Gene G2FUF-15772 BioCyc
Ensembl Genes ENSRNOG00000002318 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064263.3 UniProtKB/TrEMBL
  ENSRNOT00000095221.1 UniProtKB/TrEMBL
  ENSRNOT00000097408.1 UniProtKB/TrEMBL
  ENSRNOT00000100682.1 UniProtKB/TrEMBL
  ENSRNOT00000103342.1 UniProtKB/TrEMBL
  ENSRNOT00000114959.1 UniProtKB/TrEMBL
  ENSRNOT00000118493.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Calponin UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  DUF4757 UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene 305332 ENTREZGENE
PANTHER LIM DOMAIN ONLY 7 UniProtKB/TrEMBL
  PTHR15551:SF3 UniProtKB/TrEMBL
Pfam DUF4757 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PhenoGen Limch1 PhenoGen
PRINTS CALPONIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002318 RatGTEx
SMART LIM UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
UniProt A0A8I5XVC5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A611 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ASI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AWU4_RAT UniProtKB/TrEMBL
  A0A8I6GK71_RAT UniProtKB/TrEMBL
  F1M392 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Limch1  LIM and calponin homology domains 1  RGD1305269  similar to hypothetical protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305269  similar to hypothetical protein   RGD1305269_predicted  similar to hypothetical protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305269_predicted  similar to hypothetical protein (predicted)  LOC305332_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305332_predicted  similar to hypothetical protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL