Rps17l4 (ribosomal protein S17 like 4) - Rat Genome Database

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Gene: Rps17l4 (ribosomal protein S17 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps17l4 (Ensembl: LOC108352780)
Name: ribosomal protein S17 like 4 (Ensembl:40S ribosomal protein S17 pseudogene)
RGD ID: 11503487
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S17 pseudogene; 40S ribosomal protein S17-like; LOC108352780; ribosomal protein S17 like 1; Rps17l1; small ribosomal subunit protein eS17-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,008,501 - 80,010,335 (+)NCBIGRCr8
mRatBN7.21475,780,192 - 75,784,552 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,784,145 - 75,784,552 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01481,043,381 - 81,043,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1474,710,152 - 74,710,660 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rps17l4
28 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063273834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043609   ⟹   ENSRNOP00000045912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1475,784,145 - 75,784,552 (+)Ensembl
Rnor_6.0 Ensembl1481,043,454 - 81,043,861 (+)Ensembl
RefSeq Acc Id: XM_063273834   ⟹   XP_063129904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81480,008,501 - 80,010,335 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045912.2
Ensembl Acc Id: ENSRNOP00000045912   ⟸   ENSRNOT00000043609
RefSeq Acc Id: XP_063129904   ⟸   XM_063273834
- UniProtKB: F1M5B1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M5B1-F1-model_v2 AlphaFold F1M5B1 1-135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15310 BioCyc
Ensembl Genes ENSRNOG00000030162 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043609.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.60.20 UniProtKB/TrEMBL
InterPro Ribosomal_S17e UniProtKB/TrEMBL
  RPS17e-like_sf UniProtKB/TrEMBL
NCBI Gene LOC108352780 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  PTHR10732 UniProtKB/TrEMBL
Pfam Ribosomal_S17e UniProtKB/TrEMBL
PhenoGen Rps17l4 PhenoGen
RatGTEx ENSRNOG00000030162 RatGTEx
Superfamily-SCOP SSF116820 UniProtKB/TrEMBL
UniProt F1M5B1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rps17l4  ribosomal protein S17 like 4  Rps17l1  ribosomal protein S17 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps17l1  ribosomal protein S17 like 1  LOC108352780  40S ribosomal protein S17 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108352780  40S ribosomal protein S17 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL