Smcl1_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Smcl1_m (smoke-mediated chord length 1 (mouse)) Mus musculus

Symbol: Smcl1_m
Name: smoke-mediated chord length 1 (mouse)
RGD ID: 14696806
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391654,015,309 - 58,330,871MOUSEQTLGRCm39
GRCm381654,194,946 - 58,510,508MOUSEQTLGRCm38
cM Map16syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:28441029  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
401709926LOC131388625STARR-seq mESC enhancer starr_41024165404175154042864Mouse
15000541Gm25853predicted gene, 25853165417482554174956Mouse
401702188LOC131388626STARR-seq mESC enhancer starr_41025165417741454178662Mouse
401703526LOC131388627STARR-seq mESC enhancer starr_41026165425203954253090Mouse
401704190LOC131388628STARR-seq mESC enhancer starr_41027165434420054345150Mouse
12794720Gm46541predicted gene, 46541165439989554403917Mouse
401712728LOC131388629STARR-seq mESC enhancer starr_41028165442170954423107Mouse
14996588Gm23180predicted gene, 23180165444879154448915Mouse
401704546LOC131388630STARR-seq mESC enhancer starr_41029165446402054464748Mouse
2310399Gm8881predicted gene 8881165464686154648257Mouse
401701876LOC131388631STARR-seq mESC enhancer starr_41030165468770954689209Mouse
14998266Gm22977predicted gene, 22977165479279454792900Mouse
401717182LOC131388632STARR-seq mESC enhancer starr_41031165486940854870264Mouse
2309276Gm5769predicted gene 5769165489476854895349Mouse
401709229LOC131388633STARR-seq mESC enhancer starr_41032165503235155033342Mouse
1317738Zpld1zona pellucida like domain containing 1165504553855142403Mouse
401709317LOC131388634STARR-seq mESC enhancer starr_41033165519890755199756Mouse
12793971Gm45968predicted gene, 45968165524120155402820Mouse
401837507LOC132444087STARR-positive B cell enhancer ABC_E2465165529722955297530Mouse
5134325Mir5118microRNA 5118165531509455315160Mouse
401712814LOC131388635STARR-seq mESC enhancer starr_41035165534626855347538Mouse
401712071LOC131388636STARR-seq mESC enhancer starr_41036165538079455382664Mouse
15001936Gm23003predicted gene, 23003165541514555415251Mouse
401708883LOC131388637STARR-seq mESC enhancer starr_41037165543379455434700Mouse
401711278LOC131388638STARR-seq mESC enhancer starr_41038165544739555448751Mouse
401842296LOC132444088STARR-positive B cell enhancer mm9_chr16:55637023-55637324165545727355457574Mouse
39130311RdurRIG-I dependent antiviral response regulator RNA165552010255577639Mouse
5139901Gm19771predicted gene, 19771165556028155560594Mouse
401840848LOC132444089STARR-positive B cell enhancer mm9_chr16:55747326-55747626165556757655567876Mouse
401835422LOC132444090STARR-positive B cell enhancer mm9_chr16:55754561-55754862165557481155575112Mouse
14999459Gm26369predicted gene, 26369165559940855599507Mouse
401711143LOC131388639STARR-seq mESC enhancer starr_41041165560665655608981Mouse
1553089Nfkbiznuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta165563174055659018Mouse
163679683LOC128927532STARR-positive B cell enhancer mm9_chr16:55820985-55821286165564123555641536Mouse
401841205LOC132444091STARR-positive B cell enhancer mm9_chr16:55822089-55822389165564233955642639Mouse
1617184Nxpe3neurexophilin and PC-esterase domain family, member 3165566031655717467Mouse
401836460LOC132444092STARR-positive B cell enhancer ABC_E7463165567308155673382Mouse
401834379LOC132444093STARR-positive B cell enhancer ABC_E10911165567869155678991Mouse
401833664LOC132444094STARR-positive B cell enhancer ABC_E1926165568371755684018Mouse
5142509Gm19041predicted gene, 19041165569066755691187Mouse
5143762Gm17809predicted gene, 17809165570210055704793Mouse
401836785LOC132444095STARR-positive B cell enhancer ABC_E7464165571274955713050Mouse
1550468Cep97centrosomal protein 97165572025055755237Mouse
401838455LOC132444096STARR-positive B cell enhancer ABC_E7465165572745055727751Mouse
1615243Gm8900predicted gene 8900165576068755761098Mouse
243048417LOC128981867CapStarr-seq enhancer MGSCv37_chr16:55949146-55949379165576918855769698Mouse
401840442LOC132444097STARR-positive B cell enhancer ABC_E4179165577159855771899Mouse
401710266LOC131388640STARR-seq mESC enhancer starr_41049165577441655776059Mouse
2303941Gm6958predicted gene 6958165578167855785468Mouse
401708255LOC131388641STARR-seq mESC enhancer starr_41050165578268455783841Mouse
163667723LOC128927533STARR-positive B cell enhancer ABC_E2466165578649955786800Mouse
731427Rpl24ribosomal protein L24165578663855791800Mouse
1550947Zbtb11zinc finger and BTB domain containing 11165579182055829276Mouse
2311272Zbtb11os1zinc finger and BTB domain containing 11, opposite strand 1165579363155794980Mouse
401836579LOC132444098STARR-positive B cell enhancer ABC_E4180165579392355794224Mouse
401717423LOC131388642STARR-seq mESC enhancer starr_41052165580891355809806Mouse
1616707PcnpPEST proteolytic signal containing nuclear protein165583587055851590Mouse
401833606LOC132444099STARR-positive B cell enhancer ABC_E10912165584994655850246Mouse
1314895Trmt10ctRNA methyltransferase 10C, mitochondrial RNase P subunit165585408355858149Mouse
15001504Gm22422predicted gene, 22422165585611655856250Mouse
401839818LOC132444100STARR-positive B cell enhancer ABC_E5549165585805255858353Mouse
39131192Gm57818predicted gene, 57818165586890855873423Mouse
1550234Senp7SUMO1/sentrin specific peptidase 7165586930656010394Mouse
401838123LOC132444101STARR-positive B cell enhancer ABC_E7466165588254455882845Mouse
401837215LOC132444102STARR-positive B cell enhancer ABC_E2467165588478855885089Mouse
10022781Gm41462predicted gene, 41462165588818255890027Mouse
401833916LOC132444103STARR-positive B cell enhancer ABC_E7467165588884355889144Mouse
401715955LOC131388643STARR-seq mESC enhancer starr_41056165590525455906843Mouse
5142833Gm18723predicted gene, 18723165591607655916918Mouse
401715542LOC131388644STARR-seq mESC enhancer starr_41058165593497655937881Mouse
401702363LOC131388645STARR-seq mESC enhancer starr_41059165596473355966540Mouse
401700507LOC131388646STARR-seq mESC enhancer starr_41060165598590955986550Mouse
1551510Impg2interphotoreceptor matrix proteoglycan 2165601944756094119Mouse
401713810LOC131388647STARR-seq mESC enhancer starr_41061165604795256048844Mouse
401706009LOC131388648STARR-seq mESC enhancer starr_41062165608451756085741Mouse
401714825LOC131388649STARR-seq mESC enhancer starr_41063165610444856105791Mouse
401700902LOC131388650STARR-seq mESC enhancer starr_41064165615506856157625Mouse
7178440Gm21050predicted gene, 21050165615594956157741Mouse
1616439Abi3bpABI family member 3 binding protein165629817956510498Mouse
401712439LOC131388651STARR-seq mESC enhancer starr_41065165635777156359355Mouse
401709533LOC131388652STARR-seq mESC enhancer starr_41066165643068356432684Mouse
401704601LOC131388653STARR-seq mESC enhancer starr_41067165647542056476450Mouse
1320256TfgTrk-fused gene165651069256541801Mouse
163673100LOC128927534CapStarr-seq enhancer MGSCv37_chr16:56717659-56717768165653765156538018Mouse
1316280Adgrg7adhesion G protein-coupled receptor G7165654497256616369Mouse
401714546LOC131388654STARR-seq mESC enhancer starr_41068165656222056564005Mouse
5147229Gm15693predicted gene 15693165657863556579507Mouse
1551721Tmem45atransmembrane protein 45a165662552456706648Mouse
401712528LOC131388655STARR-seq mESC enhancer starr_41071165672187856723547Mouse
2310307Gm8932predicted gene 8932165672965856730289Mouse
5139775Lnp1leukemia NUP98 fusion partner 1165673445456748600Mouse
401712651LOC131388656STARR-seq mESC enhancer starr_41072165677804056779731Mouse
2310305Gm8938predicted gene 8938165680206656803200Mouse
401714416LOC131388657STARR-seq mESC enhancer starr_41073165681470856817172Mouse
401705618LOC131388658STARR-seq mESC enhancer starr_41074165681906656820435Mouse
1322120Tmem45a2transmembrane protein 45A2165685733056892486Mouse
401834002LOC132444104STARR-positive B cell enhancer ABC_E1927165694161656941917Mouse
1551718Tomm70atranslocase of outer mitochondrial membrane 70A165694207756974893Mouse
1552531Nit2nitrilase family, member 2165697702856987695Mouse
5145204Gm16892predicted gene, 16892165698774956996551Mouse
1332562Tbc1d23TBC1 domain family, member 23165698922557051891Mouse
401712098LOC131388659STARR-seq mESC enhancer starr_41078165699422856997098Mouse
401832961LOC132444105STARR-positive B cell enhancer ABC_E8637165699758156997882Mouse
401837090LOC132444106STARR-positive B cell enhancer ABC_E11617165703637157036671Mouse
401840328LOC132444107STARR-positive B cell enhancer mm9_chr16:57231379-57231680165705162957051930Mouse
401704987LOC131388660STARR-seq mESC enhancer starr_41080165706304557064589Mouse
401714969LOC131388661STARR-seq mESC enhancer starr_41081165707176157073024Mouse
1314507Tmem30ctransmembrane protein 30C165708650257122185Mouse
10002067Gm26800predicted gene, 26800165709957157145851Mouse
401702338LOC131388662STARR-seq mESC enhancer starr_41082165710055257101600Mouse
401707035LOC131388663STARR-seq mESC enhancer starr_41083165711748257118713Mouse
1319781Cmss1cms small ribosomal subunit 1165712236257427230Mouse
16108514921517D16RikRIKEN cDNA 4921517D16 gene165715190057168555Mouse
1618267Filip1lfilamin A interacting protein 1-like165717337657393167Mouse
401710029LOC131388664STARR-seq mESC enhancer starr_41085165721632057217774Mouse
401841800LOC132444108STARR-positive B cell enhancer ABC_E11618165721906757219367Mouse
7178107Gm20956predicted gene, 20956165724576557246314Mouse
401712280LOC131388665STARR-seq mESC enhancer starr_41086165729063557295448Mouse
401703158LOC131388666STARR-seq mESC enhancer starr_41087165736113357364762Mouse
39129906Gm53930predicted gene, 53930165736996357382205Mouse
401841926LOC132444109STARR-positive B cell enhancer ABC_E7469165737059057370891Mouse
401716801LOC131388667STARR-seq mESC enhancer starr_41088165738112557382636Mouse
401841772LOC132444110STARR-positive B cell enhancer ABC_E10913165739793557398235Mouse
401835043LOC132444111STARR-positive B cell enhancer ABC_E4181165741408557414386Mouse
163691608LOC128927535CapStarr-seq enhancer MGSCv37_chr16:57606921-57607108165742717157427570Mouse
15018609Mir1970bmicroRNA 1970b165743114957431208Mouse
1319669Col8a1collagen, type VIII, alpha 1165744461957575100Mouse
401836253LOC132444112STARR-positive B cell enhancer mm9_chr16:57669432-57669732165748968257489982Mouse
401712009LOC131388668STARR-seq mESC enhancer starr_41090165750087757502473Mouse
2301291Gm5674predicted gene 5674165758893357589608Mouse
15000734Gm24039predicted gene, 24039165770437157704502Mouse
2310595Rpl7a-ps4ribosomal protein 7A, pseudogene 4165771712457717979Mouse
39128948Gm57639predicted gene, 57639165774591357746056Mouse
401716387LOC131388669STARR-seq mESC enhancer starr_41093165787778857880326Mouse
10006765Gm41463predicted gene, 41463165796738057969047Mouse
401704201LOC131388670STARR-seq mESC enhancer starr_41094165812348558124784Mouse
401703152LOC131388671STARR-seq mESC enhancer starr_41095165821299158214355Mouse
16102394930461C15RikRIKEN cDNA 4930461C15 gene165822398458228866Mouse
401841181LOC132444113STARR-positive B cell enhancer ABC_E1928165822860558228906Mouse
735559Dcbld2discoidin, CUB and LCCL domain containing 2165822878958304013Mouse
401700742LOC131388672STARR-seq mESC enhancer starr_41096165824209558243702Mouse
1553568St3gal6ST3 beta-galactoside alpha-2,3-sialyltransferase 6165829010558344614Mouse
401837445LOC132444114STARR-positive B cell enhancer ABC_E3167165830188358302184Mouse
401840180LOC132444115STARR-positive B cell enhancer ABC_E8639165831875958319060Mouse
401836814LOC132444116STARR-positive B cell enhancer ABC_E3168165832213558322436Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
14696806Smcl1_msmoke-mediated chord length 1 (mouse)165401530958330871Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6317227 MouseQtl