Gm26800 (predicted gene, 26800) - Rat Genome Database

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Gene: Gm26800 (predicted gene, 26800) Mus musculus
Analyze
Symbol: Gm26800
Name: predicted gene, 26800
RGD ID: 10002067
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,099,571 - 57,145,851 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1657,101,230 - 57,121,778 (+)EnsemblGRCm39 Ensembl
GRCm381657,279,208 - 57,311,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,280,890 - 57,281,496 (+)EnsemblGRCm38mm10GRCm38
Celera1657,607,081 - 57,637,025 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:12904583   PMID:24316575  



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Variants in Gm26800
1472 total Variants

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:103
Interacting mature miRNAs:107
Transcripts:ENSMUST00000180871
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
14696806Smcl1_msmoke-mediated chord length 1 (mouse)165401530958330871Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse

1 to 10 of 25 rows





RefSeq Transcripts XR_003951895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT025521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000180871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1657,101,253 - 57,101,859 (+)Ensembl
GRCm38.p6 Ensembl1657,280,890 - 57,281,496 (+)Ensembl
Ensembl Acc Id: ENSMUST00000295730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1657,101,230 - 57,121,778 (+)Ensembl
RefSeq Acc Id: XR_003951895
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391657,099,571 - 57,131,630 (+)NCBI
GRCm381657,279,208 - 57,311,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004939286
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391657,101,247 - 57,145,851 (+)NCBI
Sequence:
RGD ID:15094713
Promoter ID:EPDNEWNC_M2612
Type:multiple initiation site
Name:Gm26800_1
Description:predicted gene, 26800 [Source:MGI Symbol;Acc:MGI:5477294]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381657,280,871 - 57,280,931EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000097896 Ensembl
MGD MGI:5477294 ENTREZGENE
NCBI Gene Gm26800 ENTREZGENE
PhenoGen Gm26800 PhenoGen
RNAcentral URS000077D6B3 RNACentral