Gm23003 (predicted gene, 23003) - Rat Genome Database

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Gene: Gm23003 (predicted gene, 23003) Mus musculus
Analyze
No known orthologs.
Symbol: Gm23003
Name: predicted gene, 23003
RGD ID: 15001936
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,415,145 - 55,415,251 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,415,145 - 55,415,251 (-)EnsemblGRCm39 Ensembl
GRCm381655,594,782 - 55,594,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,594,782 - 55,594,888 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm23003
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:68
Interacting mature miRNAs:68
Transcripts:ENSMUST00000179948
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
14696806Smcl1_msmoke-mediated chord length 1 (mouse)165401530958330871Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC138722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000179948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1655,594,782 - 55,594,888 (-)Ensembl
Ensembl Acc Id: ENSMUST00000240362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1655,415,145 - 55,415,251 (-)Ensembl
RefSeq Acc Id: XR_004939436
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391655,415,145 - 55,415,251 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094020 Ensembl
  ENSMUSG00000119820 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000240362 ENTREZGENE
MGD MGI:5452780 ENTREZGENE
NCBI Gene Gm23003 ENTREZGENE
PhenoGen Gm23003 PhenoGen