RNU6-967P (RNA, U6 small nuclear 967, pseudogene) - Rat Genome Database

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Gene: RNU6-967P (RNA, U6 small nuclear 967, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-967P
Name: RNA, U6 small nuclear 967, pseudogene
RGD ID: 10398998
HGNC Page HGNC:47930
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381931,787,148 - 31,787,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1931,787,148 - 31,787,255 (-)EnsemblGRCh38hg38GRCh38
GRCh371932,278,054 - 32,278,161 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q12NCBI
CHM1_11932,278,361 - 32,278,468 (-)NCBICHM1_1
T2T-CHM13v2.01934,305,720 - 34,305,827 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-967P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381931,787,148 - 31,787,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1931,787,148 - 31,787,255 (-)EnsemblGRCh38hg38GRCh38
GRCh371932,278,054 - 32,278,161 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q12NCBI
CHM1_11932,278,361 - 32,278,468 (-)NCBICHM1_1
T2T-CHM13v2.01934,305,720 - 34,305,827 (-)NCBIT2T-CHM13v2.0
Gm26420
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39379,742,240 - 79,742,342 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl379,742,240 - 79,742,342 (+)EnsemblGRCm39 Ensembl
GRCm38379,834,933 - 79,835,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl379,834,933 - 79,835,035 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3E3NCBI
LOC120096464
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81364,291,606 - 64,291,711 (-)NCBIGRCr8
mRatBN7.21361,741,487 - 61,741,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1361,741,487 - 61,741,592 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1366,890,148 - 66,890,253 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map13q21NCBI
LOC119869860
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1119,423,168 - 119,423,276 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,622,306 - 120,622,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,622,306 - 120,622,414 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,202,911 - 120,203,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,807,004 - 119,807,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,868,357 - 120,868,465 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENST00000365024
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300034BP50_HBlood pressure QTL 50 (human)2.10.00094Blood pressuresystolic191108946337089463Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
4 2 6 2 440 11 173 6 226 5 6 252 240 2 439 14 122 163 1

Sequence


Ensembl Acc Id: ENST00000365024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1931,787,148 - 31,787,255 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-967P COSMIC
Ensembl Genes ENSG00000201894 Ensembl, ENTREZGENE
GTEx ENSG00000201894 GTEx
HGNC ID HGNC:47930 ENTREZGENE
Human Proteome Map RNU6-967P Human Proteome Map
NCBI Gene RNU6-967P ENTREZGENE