Zbtb11os1 (zinc finger and BTB domain containing 11, opposite strand 1) - Rat Genome Database

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Gene: Zbtb11os1 (zinc finger and BTB domain containing 11, opposite strand 1) Mus musculus
Analyze
Symbol: Zbtb11os1
Name: zinc finger and BTB domain containing 11, opposite strand 1
RGD ID: 2311272
MGI Page MGI
Description: INTERACTS WITH bisphenol A; fenthion; perfluorohexanesulfonic acid
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 2310061J03Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,793,631 - 55,794,980 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,793,631 - 55,794,980 (-)EnsemblGRCm39 Ensembl
GRCm381655,973,268 - 55,974,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,973,268 - 55,974,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv371655,973,381 - 55,974,730 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361655,898,226 - 55,899,501 (-)NCBIMGSCv36mm8
Celera1656,288,341 - 56,289,690 (-)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18799693   PMID:20412781   PMID:24316575  


Genomics

Variants

.
Variants in Zbtb11os1
81 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
14696806Smcl1_msmoke-mediated chord length 1 (mouse)165401530958330871Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse

Markers in Region
RH126176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381655,975,926 - 55,976,138UniSTSGRCm38
MGSCv371655,976,039 - 55,976,251UniSTSGRCm37
Celera1656,290,999 - 56,291,211UniSTS
Cytogenetic Map16C1.1UniSTS
Whitehead/MRC_RH16596.98UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000186480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1655,793,631 - 55,794,980 (-)Ensembl
GRCm38.p6 Ensembl1655,973,268 - 55,974,617 (-)Ensembl
RefSeq Acc Id: NR_027965
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391655,793,631 - 55,794,980 (-)NCBI
GRCm381655,973,268 - 55,974,617 (-)ENTREZGENE
MGSCv371655,973,381 - 55,974,730 (-)RGD
Celera1656,288,341 - 56,289,690 (-)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAH17620 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:8686376
Promoter ID:EPDNEW_M21218
Type:initiation region
Name:Zbtb11os1_1
Description:Mus musculus zinc finger and BTB domain containing 11, oppositestrand 1 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381655,974,561 - 55,974,621EPDNEW
RGD ID:15094699
Promoter ID:EPDNEWNC_M2609
Type:multiple initiation site
Name:Zbtb11os1_1
Description:zinc finger and BTB domain containing 11, opposite strand 1[Source:MGI Symbol;Acc:MGI:1913641]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381655,974,578 - 55,974,638EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913641 AgrOrtholog
Ensembl Genes ENSMUSG00000102101 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000186480 ENTREZGENE
MGD MGI:1913641 ENTREZGENE
NCBI Gene 66391 ENTREZGENE
PhenoGen Zbtb11os1 PhenoGen
RNAcentral URS000075996A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-26 Zbtb11os1  zinc finger and BTB domain containing 11, opposite strand 1  2310061J03Rik  RIKEN cDNA 2310061J03 gene  Symbol and/or name change 5135510 APPROVED