St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) - Rat Genome Database

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Gene: St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) Mus musculus
Analyze
Symbol: St3gal6
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 6
RGD ID: 1553568
MGI Page MGI
Description: Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to be involved in glycolipid biosynthetic process and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Is expressed in dentate gyrus subgranular zone and early tubule. Orthologous to human ST3GAL6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700023B24Rik; AI930218; alpha-2,3-sialyltransferase VI; AW552396; CMP-NeuAc:beta-galactoside alpha-2,3-sialyltransferase VI; Sia; sialyltransferase 10 (alpha-2,3-sialyltransferase VI); Siat10; ST3Gal VI; St3galVI; type 2 lactosamine alpha-2,3-sialyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,290,105 - 58,344,614 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,288,488 - 58,344,606 (-)EnsemblGRCm39 Ensembl
GRCm381658,469,742 - 58,524,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,468,125 - 58,524,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv371658,470,654 - 58,523,425 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361658,413,084 - 58,465,855 (-)NCBIMGSCv36mm8
Celera1658,755,151 - 58,808,030 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
clofibrate  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
L-ethionine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
ozone  (EXP)
paracetamol  (ISO)
PD 0325901  (ISO)
perfluorohexanesulfonic acid  (EXP)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
rimonabant  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (EXP)
sunitinib  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
zebularine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10619706   PMID:10894948   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18287559   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22700726   PMID:22967998   PMID:24154525   PMID:30308156   PMID:37752945  


Genomics

Comparative Map Data
St3gal6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,290,105 - 58,344,614 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,288,488 - 58,344,606 (-)EnsemblGRCm39 Ensembl
GRCm381658,469,742 - 58,524,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,468,125 - 58,524,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv371658,470,654 - 58,523,425 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361658,413,084 - 58,465,855 (-)NCBIMGSCv36mm8
Celera1658,755,151 - 58,808,030 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.58NCBI
ST3GAL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,732,262 - 98,795,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,732,236 - 98,821,201 (+)EnsemblGRCh38hg38GRCh38
GRCh37398,451,106 - 98,514,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,934,262 - 99,995,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 34399,934,261 - 99,995,924NCBI
Celera396,843,261 - 96,904,902 (+)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef395,823,269 - 95,886,702 (+)NCBIHuRef
CHM1_1398,414,233 - 98,477,819 (+)NCBICHM1_1
T2T-CHM13v2.03101,440,560 - 101,504,133 (+)NCBIT2T-CHM13v2.0
St3gal6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Celera1141,876,333 - 41,920,495 (+)NCBICelera
Cytogenetic Map11q12NCBI
St3gal6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,682,241 - 96,748,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,687,012 - 96,754,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,833,529 - 95,897,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,515,153 - 102,579,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,515,185 - 102,578,843 (+)Ensemblpanpan1.1panPan2
ST3GAL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,572,228 - 5,631,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,604,628 - 5,630,703 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha335,722,885 - 5,791,963 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0335,710,802 - 5,780,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,711,625 - 5,766,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,583,701 - 5,665,729 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,646,526 - 5,716,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,923,257 - 5,992,594 (+)NCBIUU_Cfam_GSD_1.0
St3gal6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602151,328,232 - 151,383,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366304,226,115 - 4,280,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366304,226,539 - 4,281,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13160,158,259 - 160,224,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113160,158,238 - 160,225,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213170,305,811 - 170,328,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,059,441 - 82,126,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,059,457 - 82,108,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604184,429,806 - 84,495,181 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478911,822,905 - 11,857,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478911,782,895 - 11,858,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in St3gal6
1536 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1861
Count of miRNA genes:662
Interacting mature miRNAs:806
Transcripts:ENSMUST00000114357, ENSMUST00000114358, ENSMUST00000123918, ENSMUST00000125712, ENSMUST00000126978, ENSMUST00000135721, ENSMUST00000137035, ENSMUST00000137850, ENSMUST00000142900, ENSMUST00000145283, ENSMUST00000148061, ENSMUST00000149197, ENSMUST00000149456, ENSMUST00000151510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
14696806Smcl1_msmoke-mediated chord length 1 (mouse)165401530958330871Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse

Markers in Region
AW146002  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381658,468,698 - 58,468,822UniSTSGRCm38
MGSCv371658,468,811 - 58,468,935UniSTSGRCm37
Celera1658,753,308 - 58,753,432UniSTS
Cytogenetic Map16C1.2UniSTS
Whitehead/MRC_RH16626.15UniSTS
AI930218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381658,469,864 - 58,470,000UniSTSGRCm38
MGSCv371658,469,977 - 58,470,113UniSTSGRCm37
Celera1658,754,474 - 58,754,610UniSTS
Cytogenetic Map16C1.2UniSTS
Whitehead/MRC_RH16622.27UniSTS
Whitehead/MRC_RH16622.89UniSTS
RH141458  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381658,470,511 - 58,470,727UniSTSGRCm38
MGSCv371658,470,624 - 58,470,840UniSTSGRCm37
Celera1658,755,121 - 58,755,337UniSTS
Cytogenetic Map16C1.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_384577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB063326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF119390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT027564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH924879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI578554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000114357   ⟹   ENSMUSP00000109997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,290,575 - 58,344,548 (-)Ensembl
GRCm38.p6 Ensembl1658,470,212 - 58,524,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114358   ⟹   ENSMUSP00000109998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,290,116 - 58,344,606 (-)Ensembl
GRCm38.p6 Ensembl1658,469,753 - 58,524,243 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123918   ⟹   ENSMUSP00000117849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,314,054 - 58,344,532 (-)Ensembl
GRCm38.p6 Ensembl1658,493,691 - 58,524,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125712   ⟹   ENSMUSP00000156105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,314,108 - 58,343,707 (-)Ensembl
GRCm38.p6 Ensembl1658,493,745 - 58,523,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126978   ⟹   ENSMUSP00000116202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,309,295 - 58,344,532 (-)Ensembl
GRCm38.p6 Ensembl1658,488,932 - 58,524,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,306,784 - 58,309,788 (-)Ensembl
GRCm38.p6 Ensembl1658,486,421 - 58,489,425 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137035   ⟹   ENSMUSP00000115756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,288,488 - 58,343,789 (-)Ensembl
GRCm38.p6 Ensembl1658,468,125 - 58,523,426 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,323,224 - 58,328,261 (-)Ensembl
GRCm38.p6 Ensembl1658,502,861 - 58,507,898 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142900   ⟹   ENSMUSP00000156309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,314,117 - 58,344,087 (-)Ensembl
GRCm38.p6 Ensembl1658,493,754 - 58,523,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,323,224 - 58,344,121 (-)Ensembl
GRCm38.p6 Ensembl1658,502,861 - 58,523,758 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148061   ⟹   ENSMUSP00000155951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,314,106 - 58,319,704 (-)Ensembl
GRCm38.p6 Ensembl1658,493,743 - 58,499,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,296,220 - 58,343,916 (-)Ensembl
GRCm38.p6 Ensembl1658,475,857 - 58,523,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149456   ⟹   ENSMUSP00000156226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,309,282 - 58,343,807 (-)Ensembl
GRCm38.p6 Ensembl1658,488,919 - 58,523,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151510   ⟹   ENSMUSP00000156169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,314,117 - 58,344,497 (-)Ensembl
GRCm38.p6 Ensembl1658,493,754 - 58,524,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1658,323,230 - 58,334,547 (-)Ensembl
GRCm38.p6 Ensembl1658,502,867 - 58,514,184 (-)Ensembl
RefSeq Acc Id: NM_001357433   ⟹   NP_001344362
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,536 (-)NCBI
GRCm381658,469,742 - 58,524,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357434   ⟹   NP_001344363
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,536 (-)NCBI
GRCm381658,469,742 - 58,524,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357435   ⟹   NP_001344364
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,536 (-)NCBI
GRCm381658,469,742 - 58,524,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001403132   ⟹   NP_001390061
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,918 (-)NCBI
RefSeq Acc Id: NM_001403133   ⟹   NP_001390062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,698 (-)NCBI
RefSeq Acc Id: NM_001403134   ⟹   NP_001390063
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,328,276 (-)NCBI
RefSeq Acc Id: NM_001403135   ⟹   NP_001390064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,319,754 (-)NCBI
RefSeq Acc Id: NM_001403136   ⟹   NP_001390065
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,698 (-)NCBI
RefSeq Acc Id: NM_001403137   ⟹   NP_001390066
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,319,754 (-)NCBI
RefSeq Acc Id: NM_018784   ⟹   NP_061254
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,789 (-)NCBI
GRCm381658,469,742 - 58,523,426 (-)NCBI
MGSCv371658,470,654 - 58,523,425 (-)RGD
Celera1658,755,151 - 58,808,030 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_175353
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,918 (-)NCBI
RefSeq Acc Id: NR_175354
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,698 (-)NCBI
RefSeq Acc Id: NR_175355
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,698 (-)NCBI
RefSeq Acc Id: NR_175356
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,698 (-)NCBI
RefSeq Acc Id: XM_011245974   ⟹   XP_011244276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,318,017 (-)NCBI
GRCm381658,469,742 - 58,497,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245975   ⟹   XP_011244277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,610 (-)NCBI
GRCm381658,469,742 - 58,523,496 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245976   ⟹   XP_011244278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,291,110 - 58,344,610 (-)NCBI
GRCm381658,470,737 - 58,523,496 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249194   ⟹   XP_030105054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,859 (-)NCBI
GRCm381658,469,742 - 58,523,496 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160026   ⟹   XP_036015919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,343,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160027   ⟹   XP_036015920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,291,110 - 58,343,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160028   ⟹   XP_036015921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160029   ⟹   XP_036015922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160030   ⟹   XP_036015923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160031   ⟹   XP_036015924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,291,110 - 58,344,610 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160032   ⟹   XP_036015925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,318,362 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951802
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,111 - 58,344,612 (-)NCBI
GRCm381658,469,748 - 58,523,496 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951805
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,111 - 58,344,614 (-)NCBI
GRCm381658,469,748 - 58,523,510 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939201
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,111 - 58,343,859 (-)NCBI
Sequence:
RefSeq Acc Id: XR_384577
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391658,290,105 - 58,344,612 (-)NCBI
GRCm381658,469,748 - 58,523,496 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344362 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344363 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344364 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390061 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390062 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390064 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001390066 (Get FASTA)   NCBI Sequence Viewer  
  NP_061254 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244276 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244277 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244278 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105054 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015919 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015920 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015921 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015922 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015923 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015924 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015925 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD39130 (Get FASTA)   NCBI Sequence Viewer  
  AAH30033 (Get FASTA)   NCBI Sequence Viewer  
  AAH52338 (Get FASTA)   NCBI Sequence Viewer  
  BAB24490 (Get FASTA)   NCBI Sequence Viewer  
  BAB79494 (Get FASTA)   NCBI Sequence Viewer  
  BAC28360 (Get FASTA)   NCBI Sequence Viewer  
  BAC30851 (Get FASTA)   NCBI Sequence Viewer  
  BAE36994 (Get FASTA)   NCBI Sequence Viewer  
  CBX32760 (Get FASTA)   NCBI Sequence Viewer  
  CBX46693 (Get FASTA)   NCBI Sequence Viewer  
  EDK98180 (Get FASTA)   NCBI Sequence Viewer  
  EDK98181 (Get FASTA)   NCBI Sequence Viewer  
  EDK98182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000109997
  ENSMUSP00000109997.4
  ENSMUSP00000109998
  ENSMUSP00000109998.3
  ENSMUSP00000115756
  ENSMUSP00000115756.2
  ENSMUSP00000116202.2
  ENSMUSP00000117849.2
  ENSMUSP00000155951.2
  ENSMUSP00000156105.2
  ENSMUSP00000156226.2
GenBank Protein Q8VIB3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_061254   ⟸   NM_018784
- Peptide Label: isoform 1
- UniProtKB: Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot),   Q8VIB3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244277   ⟸   XM_011245975
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011244276   ⟸   XM_011245974
- Peptide Label: isoform X4
- UniProtKB: Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot),   Q8VIB3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244278   ⟸   XM_011245976
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: NP_001344362   ⟸   NM_001357433
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001344363   ⟸   NM_001357434
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001344364   ⟸   NM_001357435
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030105054   ⟸   XM_030249194
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000156105   ⟸   ENSMUST00000125712
RefSeq Acc Id: ENSMUSP00000116202   ⟸   ENSMUST00000126978
RefSeq Acc Id: ENSMUSP00000156169   ⟸   ENSMUST00000151510
RefSeq Acc Id: ENSMUSP00000156226   ⟸   ENSMUST00000149456
RefSeq Acc Id: ENSMUSP00000155951   ⟸   ENSMUST00000148061
RefSeq Acc Id: ENSMUSP00000109997   ⟸   ENSMUST00000114357
RefSeq Acc Id: ENSMUSP00000109998   ⟸   ENSMUST00000114358
RefSeq Acc Id: ENSMUSP00000117849   ⟸   ENSMUST00000123918
RefSeq Acc Id: ENSMUSP00000115756   ⟸   ENSMUST00000137035
RefSeq Acc Id: ENSMUSP00000156309   ⟸   ENSMUST00000142900
RefSeq Acc Id: XP_036015922   ⟸   XM_036160029
- Peptide Label: isoform X4
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036015921   ⟸   XM_036160028
- Peptide Label: isoform X4
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036015923   ⟸   XM_036160030
- Peptide Label: isoform X4
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036015919   ⟸   XM_036160026
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015925   ⟸   XM_036160032
- Peptide Label: isoform X4
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036015924   ⟸   XM_036160031
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036015920   ⟸   XM_036160027
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001390061   ⟸   NM_001403132
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001390062   ⟸   NM_001403133
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001390065   ⟸   NM_001403136
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001390063   ⟸   NM_001403134
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001390066   ⟸   NM_001403137
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001390064   ⟸   NM_001403135
- Peptide Label: isoform 1
- UniProtKB: Q8VIB3 (UniProtKB/Swiss-Prot),   Q80UR7 (UniProtKB/Swiss-Prot),   Q3TRN3 (UniProtKB/Swiss-Prot),   Q9WVG2 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VIB3-F1-model_v2 AlphaFold Q8VIB3 1-329 view protein structure

Promoters
RGD ID:6826792
Promoter ID:MM_KWN:21291
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:UC007ZNS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361658,470,001 - 58,471,167 (-)MPROMDB
RGD ID:6827540
Promoter ID:MM_KWN:21292
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000063077
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361658,489,416 - 58,490,417 (-)MPROMDB
RGD ID:6827538
Promoter ID:MM_KWN:21293
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney,   Lung
Transcripts:OTTMUST00000063076
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361658,499,301 - 58,499,801 (-)MPROMDB
RGD ID:6827537
Promoter ID:MM_KWN:21295
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000063056,   OTTMUST00000063059,   OTTMUST00000063069,   OTTMUST00000063070,   OTTMUST00000063071,   OTTMUST00000063072,   OTTMUST00000063073,   OTTMUST00000063074,   OTTMUST00000063075,   UC007ZNU.1,   UC007ZNV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361658,523,136 - 58,523,636 (-)MPROMDB
RGD ID:13674184
Promoter ID:EPDNEW_M21240
Type:multiple initiation site
Name:St3gal6_1
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase6 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21242  EPDNEW_M21241  EPDNEW_M21243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381658,523,334 - 58,523,394EPDNEW
RGD ID:13674186
Promoter ID:EPDNEW_M21241
Type:initiation region
Name:St3gal6_3
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase6 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21242  EPDNEW_M21240  EPDNEW_M21243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381658,523,530 - 58,523,590EPDNEW
RGD ID:13674182
Promoter ID:EPDNEW_M21242
Type:initiation region
Name:St3gal6_4
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase6 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21240  EPDNEW_M21241  EPDNEW_M21243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381658,523,724 - 58,523,784EPDNEW
RGD ID:13674188
Promoter ID:EPDNEW_M21243
Type:multiple initiation site
Name:St3gal6_2
Description:Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase6 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21242  EPDNEW_M21240  EPDNEW_M21241  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381658,524,169 - 58,524,229EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1888707 AgrOrtholog
Ensembl Genes ENSMUSG00000022747 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000114357 ENTREZGENE
  ENSMUST00000114357.10 UniProtKB/Swiss-Prot
  ENSMUST00000114358 ENTREZGENE
  ENSMUST00000114358.9 UniProtKB/Swiss-Prot
  ENSMUST00000123918.8 UniProtKB/TrEMBL
  ENSMUST00000125712.2 UniProtKB/TrEMBL
  ENSMUST00000126978.8 UniProtKB/TrEMBL
  ENSMUST00000137035 ENTREZGENE
  ENSMUST00000137035.8 UniProtKB/Swiss-Prot
  ENSMUST00000148061.2 UniProtKB/TrEMBL
  ENSMUST00000149456.8 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/Swiss-Prot
KEGG Report mmu:54613 UniProtKB/Swiss-Prot
MGD MGI:1888707 ENTREZGENE
NCBI Gene 54613 ENTREZGENE
PANTHER SIALYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYPE 2 LACTOSAMINE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen St3gal6 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot
UniProt A0A338P6H0_MOUSE UniProtKB/TrEMBL
  A0A338P743_MOUSE UniProtKB/TrEMBL
  A6X952_MOUSE UniProtKB/TrEMBL
  A6X953_MOUSE UniProtKB/TrEMBL
  Q3TRN3 ENTREZGENE
  Q80UR7 ENTREZGENE
  Q8BLV1_MOUSE UniProtKB/TrEMBL
  Q8K0W8_MOUSE UniProtKB/TrEMBL
  Q8VIB3 ENTREZGENE
  Q9CVW3_MOUSE UniProtKB/TrEMBL
  Q9WVG2 ENTREZGENE
  SIA10_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TRN3 UniProtKB/Swiss-Prot
  Q80UR7 UniProtKB/Swiss-Prot
  Q9WVG2 UniProtKB/Swiss-Prot