| 1354641 | Bvd2 | Brain ventricular dilatation QTL 2 | 6.36 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 10 | 93223816 | 107057807 | Rat |
| 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 63221094 | 107211142 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 42045676 | 104670812 | Rat |
| 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 57576521 | 102576521 | Rat |
| 1579915 | Bp280 | Blood pressure QTL 280 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 90404397 | 107211142 | Rat |
| 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 53797494 | 98952626 | Rat |
| 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 3.4 | | nervous system integrity trait (VT:0010566) | spinal cord RT1-B protein level (CMO:0002132) | 10 | 72224939 | 107211142 | Rat |
| 1302404 | Cia27 | Collagen induced arthritis QTL 27 | 2.6 | 0.0045 | joint integrity trait (VT:0010548) | experimental arthritis severity measurement (CMO:0001459) | 10 | 76452683 | 107211142 | Rat |
| 2317754 | Glom25 | Glomerulus QTL 25 | 3.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 82685200 | 107211142 | Rat |
| 70168 | Eae12 | Experimental allergic encephalomyelitis QTL 12 | | 0.0009 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 10 | 92238497 | 101012337 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat |
| 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 53797385 | 107211142 | Rat |
| 10450493 | Bp382 | Blood pressure QTL 382 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 94759759 | 107211142 | Rat |
| 1578672 | Bmd16 | Bone mineral density QTL 16 | 6.2 | | femur mineral mass (VT:0010011) | compact volumetric bone mineral density (CMO:0001730) | 10 | 96703043 | 107057807 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 62057807 | 107057807 | Rat |
| 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 10 | 69738412 | 107211142 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat |
| 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 10 | 69738412 | 107211142 | Rat |
| 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 10 | 72224939 | 107211142 | Rat |
| 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 62057807 | 107057807 | Rat |
| 61363 | Oia3 | Oil induced arthritis QTL 3 | | 0.001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 87307617 | 107211142 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat |
| 724530 | Bp149 | Blood pressure QTL 149 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 90627439 | 107211142 | Rat |
| 1300137 | Bp186 | Blood pressure QTL 186 | 3.57 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 10 | 90627439 | 107057807 | Rat |
| 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 10 | 69738412 | 107211142 | Rat |
| 1578663 | Bss18 | Bone structure and strength QTL 18 | 3.6 | | femur width (VT:1000666) | femoral neck width (CMO:0001695) | 10 | 96703043 | 107057807 | Rat |
| 7387312 | Bw125 | Body weight QTL 125 | 3 | 0.0047 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight (CMO:0000356) | 10 | 64890616 | 107211142 | Rat |
| 2312672 | Insul15 | Insulin level QTL 15 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 57134272 | 102134272 | Rat |
| 6893357 | Bw102 | Body weight QTL 102 | 0.5 | 0.36 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 80515287 | 101325465 | Rat |
| 12880384 | Cm107 | Cardiac mass QTL 107 | | 0.001 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | | 90404397 | 107211142 | Rat |
| 12880385 | Cm108 | Cardiac mass QTL 108 | | 0.001 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | | 90404397 | 107211142 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 66978955 | 107211142 | Rat |
| 2303589 | Bw87 | Body weight QTL 87 | 2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 81285008 | 107211142 | Rat |
| 12880396 | Am13 | Aortic mass QTL 13 | | 0.001 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 90404397 | 107211142 | Rat |
| 12880398 | Kidm67 | Kidney mass QTL 67 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 10 | 90404397 | 107211142 | Rat |
| 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 51770177 | 107211142 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 66978955 | 107211142 | Rat |
| 12880395 | Cm109 | Cardiac mass QTL 109 | | 0.001 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 10 | 90404397 | 107211142 | Rat |
| 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68420376 | 107211142 | Rat |
| 634320 | Niddm49 | Non-insulin dependent diabetes mellitus QTL 49 | 4.41 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 10 | 88539139 | 107211142 | Rat |
| 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat |
| 10450498 | Bp384 | Blood pressure QTL 384 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 67750049 | 107211142 | Rat |
| 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | pancreatic beta cell morphology trait (VT:0005217) | ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814) | 10 | 76748906 | 107211142 | Rat |
| 6893366 | Bw106 | Body weight QTL 106 | 0.3 | 0.47 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 70199100 | 107211142 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 59209888 | 104209888 | Rat |
| 1576313 | Pia25 | Pristane induced arthritis QTL 25 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 96120911 | 104060283 | Rat |
| 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 54809292 | 99809292 | Rat |
| 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 61345276 | 99703528 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1576307 | Cia28 | Collagen induced arthritis QTL 28 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 96120911 | 104060283 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 40035094 | 102359817 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 61345276 | 99703528 | Rat |
| 2292438 | Bp311 | Blood pressure QTL 311 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 107211142 | Rat |
| 2312662 | Slep8 | Serum leptin concentration QTL 8 | | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 57134272 | 102134272 | Rat |
| 2292436 | Bp310 | Blood pressure QTL 310 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 94759759 | 107211142 | Rat |
| 1600367 | Mcs15 | Mammary carcinoma susceptibility QTL 15 | 4.5 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 10 | 85565469 | 103884409 | Rat |
| 631539 | Oia6 | Oil induced arthritis QTL 6 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 97010147 | 104670812 | Rat |
| 631538 | Oia5 | Oil induced arthritis QTL 5 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 87055121 | 107211142 | Rat |
| 61436 | Cia5 | Collagen induced arthritis QTL 5 | 4.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 91228102 | 104060283 | Rat |
| 1642980 | Bp300 | Blood pressure QTL 300 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68383129 | 107211142 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat |
| 2312668 | Scl65 | Serum cholesterol level QTL 65 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 57134272 | 102134272 | Rat |
