Symbol:
Calb1
Name:
calbindin 1
RGD ID:
69340
Description:
Enables calcium ion binding activity. Involved in several processes, including cochlea development; regulation of synaptic plasticity; and response to auditory stimulus. Located in axon; cuticular plate; and stereocilium. Is active in calyx of Held; postsynaptic cytosol; and presynaptic cytosol. Biomarker of alcohol use disorder and bilirubin metabolic disorder. Orthologous to human CALB1 (calbindin 1); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH (S)-nicotine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
CaBP28K; calbindin; calbindin 1 28 kD; calbindin 1, (28kD); calbindin 1, 28 kD; calbindin D28; cerebellar Ca-binding protein spot 35 protein; cerebellar Ca-binding protein, spot 35 protein; D-28K; MGC93326; spot 35 protein; vitamin D-dependent calcium-binding protein, avian-type
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
CALB1 (calbindin 1) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Calb1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Calb1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
CALB1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
CALB1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Calb1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
CALB1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CALB1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Calb1 (calbindin 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
CALB1 (calbindin 1)
Alliance
DIOPT (HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Calb1 (calbindin 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
calb1 (calbindin 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
Cbp53E
Alliance
DIOPT (InParanoid|OMA|OrthoInspector|PANTHER|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
calb1
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 34,172,612 - 34,199,555 (+) NCBI GRCr8 mRatBN7.2 5 29,375,624 - 29,402,532 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 29,375,642 - 29,402,431 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 31,531,877 - 31,556,210 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 33,124,545 - 33,148,878 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 33,084,720 - 33,109,051 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 29,538,380 - 29,562,774 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 29,538,380 - 29,562,773 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 34,217,930 - 34,242,324 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 30,455,665 - 30,480,122 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 30,455,683 - 30,480,116 (+) NCBI Celera 5 28,581,243 - 28,605,619 (+) NCBI Celera Cytogenetic Map 5 q13 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Calb1 Rat (1->4)-beta-D-glucan multiple interactions ISO Calb1 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CALB1 mRNA CTD PMID:36331819 Calb1 Rat (S)-nicotine multiple interactions EXP 6480464 Mecamylamine inhibits the reaction [Nicotine results in increased expression of CALB1 protein] CTD PMID:11226671 Calb1 Rat (S)-nicotine increases expression EXP 6480464 Nicotine results in increased expression of CALB1 protein CTD PMID:11226671 Calb1 Rat 1,1-dichloroethene decreases expression ISO Calb1 (Mus musculus) 6480464 vinylidene chloride results in decreased expression of CALB1 mRNA CTD PMID:26682919 Calb1 Rat 1,2-dichloroethane decreases expression ISO Calb1 (Mus musculus) 6480464 ethylene dichloride results in decreased expression of CALB1 mRNA CTD PMID:28960355 Calb1 Rat 17alpha-ethynylestradiol increases expression ISO Calb1 (Mus musculus) 6480464 Ethinyl Estradiol results in increased expression of CALB1 mRNA CTD PMID:17942748 Calb1 Rat 17alpha-ethynylestradiol multiple interactions ISO Calb1 (Mus musculus) 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of CALB1 mRNA CTD PMID:17942748 Calb1 Rat 2,2',4,4',5,5'-hexachlorobiphenyl multiple interactions ISO Calb1 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb1 Rat 2,2',5,5'-tetrachlorobiphenyl multiple interactions ISO Calb1 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb1 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO CALB1 (Homo sapiens) 6480464 Tetrachlorodibenzodioxin results in decreased expression of CALB1 mRNA CTD PMID:11007951 Calb1 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO Calb1 (Mus musculus) 6480464 Tetrachlorodibenzodioxin results in decreased expression of CALB1 mRNA CTD PMID:17337447 and PMID:21354282 Calb1 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO Calb1 (Mus musculus) 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of CALB1 mRNA CTD PMID:17942748 Calb1 Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO CALB1 (Homo sapiens) 6480464 Cycloheximide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of CALB1 mRNA] CTD PMID:11007951 Calb1 Rat 3H-1,2-dithiole-3-thione increases expression EXP 6480464 1 and 2-dithiol-3-thione results in increased expression of CALB1 mRNA CTD PMID:19162173 Calb1 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of CALB1 mRNA and Propylthiouracil results in increased expression of CALB1 protein CTD PMID:20347957 and PMID:24780913 Calb1 Rat acrylamide decreases expression ISO CALB1 (Homo sapiens) 6480464 Acrylamide results in decreased expression of CALB1 mRNA CTD PMID:32763439 Calb1 Rat adefovir increases secretion EXP 6480464 adefovir results in increased secretion of CALB1 protein CTD PMID:27742868 Calb1 Rat aflatoxin B1 decreases methylation ISO CALB1 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of CALB1 gene CTD PMID:27153756 Calb1 Rat all-trans-retinoic acid decreases expression ISO CALB1 (Homo sapiens) 6480464 Tretinoin results in decreased expression of CALB1 mRNA CTD PMID:21934132 Calb1 Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of CALB1 mRNA CTD PMID:16483693 Calb1 Rat aristolochic acid A multiple interactions EXP 6480464 [aristolochic acid I co-treated with aristolochic acid II] results in decreased expression of CALB1 protein CTD PMID:23912714 Calb1 Rat arsenite(3-) increases expression ISO Calb1 (Mus musculus) 6480464 arsenite results in increased expression of CALB1 mRNA CTD PMID:33053406 Calb1 Rat bacitracin decreases expression EXP 6480464 Bacitracin results in decreased expression of CALB1 mRNA CTD PMID:18289764 Calb1 Rat belinostat increases expression ISO CALB1 (Homo sapiens) 6480464 belinostat results in increased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat benzo[a]pyrene increases methylation ISO CALB1 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of CALB1 exon and Benzo(a)pyrene results in increased methylation of CALB1 promoter CTD PMID:27901495 Calb1 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CALB1 mRNA CTD PMID:25181051 Calb1 Rat bisphenol A increases expression ISO Calb1 (Mus musculus) 6480464 bisphenol A results in increased expression of CALB1 mRNA CTD PMID:32156529 and PMID:32365465 Calb1 Rat Brodifacoum increases expression EXP 6480464 bromfenacoum results in increased expression of CALB1 protein CTD PMID:28903499 Calb1 Rat buta-1,3-diene decreases expression ISO Calb1 (Mus musculus) 6480464 1 and 3-butadiene results in decreased expression of CALB1 mRNA CTD PMID:29038090 Calb1 Rat cadmium dichloride decreases methylation EXP 6480464 Cadmium Chloride results in decreased methylation of CALB1 promoter CTD PMID:22457795 Calb1 Rat cadmium dichloride decreases expression EXP 6480464 Cadmium Chloride results in decreased expression of CALB1 mRNA CTD PMID:33453195 Calb1 Rat cadmium sulfate increases expression ISO CALB1 (Homo sapiens) 6480464 cadmium sulfate results in increased expression of CALB1 mRNA CTD PMID:21783983 Calb1 Rat calcitriol increases expression ISO CALB1 (Homo sapiens) 6480464 Calcitriol results in increased expression of CALB1 mRNA and Calcitriol results in increased expression of CALB1 protein CTD PMID:15922086 Calb1 Rat calcitriol increases expression EXP 6480464 Calcitriol results in increased expression of CALB1 mRNA CTD PMID:15883024 Calb1 Rat calcitriol increases expression ISO Calb1 (Mus musculus) 6480464 Calcitriol results in increased expression of CALB1 mRNA CTD PMID:16857747 Calb1 Rat calcitriol multiple interactions ISO CALB1 (Homo sapiens) 6480464 ZK159222 inhibits the reaction [Calcitriol results in increased expression of CALB1 mRNA] and ZK159222 inhibits the reaction [Calcitriol results in increased expression of CALB1 protein] CTD PMID:15922086 Calb1 Rat calcium atom affects expression EXP 6480464 Calcium affects the expression of CALB1 mRNA CTD PMID:15913539 Calb1 Rat calcium(0) affects expression EXP 6480464 Calcium affects the expression of CALB1 mRNA CTD PMID:15913539 Calb1 Rat captopril multiple interactions ISO Calb1 (Mus musculus) 6480464 Captopril promotes the reaction [LEPR protein affects the expression of CALB1 protein] CTD PMID:28130181 Calb1 Rat cefaloridine increases expression EXP 6480464 Cephaloridine results in increased expression of CALB1 mRNA CTD PMID:18500788 Calb1 Rat CGP 52608 multiple interactions ISO CALB1 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to CALB1 gene] CTD PMID:28238834 Calb1 Rat cisplatin decreases expression EXP 6480464 Cisplatin results in decreased expression of CALB1 mRNA CTD PMID:18289764 Calb1 Rat cisplatin affects expression ISO Calb1 (Mus musculus) 6480464 Cisplatin affects the expression of CALB1 protein CTD PMID:35403300 Calb1 Rat cisplatin increases expression ISO Calb1 (Mus musculus) 6480464 Cisplatin results in increased expression of CALB1 mRNA CTD PMID:35403300 Calb1 Rat cisplatin increases expression EXP 6480464 Cisplatin results in increased expression of CALB1 protein CTD PMID:23287709 Calb1 Rat cisplatin increases expression ISO CALB1 (Homo sapiens) 6480464 Cisplatin results in increased expression of CALB1 mRNA and Cisplatin results in increased expression of CALB1 protein CTD PMID:23287709 Calb1 Rat copper(II) chloride multiple interactions ISO Calb1 (Mus musculus) 6480464 CALB1 protein inhibits the reaction [cupric chloride results in decreased activity of CTSB protein] more ... CTD PMID:37981210 Calb1 Rat copper(II) sulfate decreases expression ISO CALB1 (Homo sapiens) 6480464 Copper Sulfate results in decreased expression of CALB1 mRNA CTD PMID:19549813 Calb1 Rat cycloheximide multiple interactions ISO CALB1 (Homo sapiens) 6480464 Cycloheximide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of CALB1 mRNA] CTD PMID:11007951 Calb1 Rat cyclosporin A decreases expression EXP 6480464 Cyclosporine results in decreased expression of CALB1 mRNA CTD PMID:21865292 Calb1 Rat cytarabine decreases expression EXP 6480464 Cytarabine results in decreased expression of CALB1 protein CTD PMID:22212197 Calb1 Rat DDE decreases expression ISO CALB1 (Homo sapiens) 6480464 Dichlorodiphenyl Dichloroethylene results in decreased expression of CALB1 mRNA CTD PMID:38568856 Calb1 Rat dexamethasone decreases expression EXP 6480464 Dexamethasone results in decreased expression of CALB1 mRNA CTD PMID:14978156 Calb1 Rat diethanolamine increases expression ISO CALB1 (Homo sapiens) 6480464 diethanolamine results in increased expression of CALB1 mRNA CTD PMID:35812078 Calb1 Rat diethylstilbestrol decreases expression ISO Calb1 (Mus musculus) 6480464 Diethylstilbestrol results in decreased expression of CALB1 mRNA CTD PMID:17394237 Calb1 Rat dioxygen decreases expression ISO Calb1 (Mus musculus) 6480464 Oxygen deficiency results in decreased expression of CALB1 mRNA CTD PMID:16373842 Calb1 Rat dioxygen multiple interactions ISO Calb1 (Mus musculus) 6480464 Simvastatin inhibits the reaction [Oxygen deficiency results in decreased expression of CALB1 mRNA] CTD PMID:16373842 Calb1 Rat dorsomorphin multiple interactions ISO CALB1 (Homo sapiens) 6480464 [NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ... CTD PMID:27188386 Calb1 Rat entinostat increases expression ISO CALB1 (Homo sapiens) 6480464 entinostat results in increased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat entinostat multiple interactions ISO CALB1 (Homo sapiens) 6480464 [NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB1 mRNA CTD PMID:27188386 Calb1 Rat ethanol decreases expression EXP 6480464 Ethanol results in decreased expression of CALB1 mRNA CTD PMID:17618662 Calb1 Rat ethanol increases expression ISO Calb1 (Mus musculus) 6480464 Ethanol results in increased expression of CALB1 mRNA CTD PMID:30319688 Calb1 Rat ethanol multiple interactions EXP 6480464 [Dronabinol co-treated with Ethanol] results in decreased expression of CALB1 mRNA CTD PMID:17618662 Calb1 Rat furosemide increases expression ISO Calb1 (Mus musculus) 6480464 Furosemide results in increased expression of CALB1 mRNA and Furosemide results in increased expression of CALB1 protein CTD PMID:17652376 Calb1 Rat genistein decreases expression ISO Calb1 (Mus musculus) 6480464 Genistein results in decreased expression of CALB1 mRNA CTD PMID:22553218 Calb1 Rat gentamycin increases expression ISO Calb1 (Mus musculus) 6480464 Gentamicins results in increased expression of CALB1 mRNA and Gentamicins results in increased expression of CALB1 protein CTD PMID:17652376 Calb1 Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of CALB1 mRNA CTD PMID:18289764 Calb1 Rat glycidol decreases expression EXP 6480464 glycidol results in decreased expression of CALB1 mRNA CTD PMID:24395379 and PMID:24915197 Calb1 Rat ivermectin increases expression ISO CALB1 (Homo sapiens) 6480464 Ivermectin results in increased expression of CALB1 protein CTD PMID:32959892 Calb1 Rat kainic acid decreases expression ISO Calb1 (Mus musculus) 6480464 Kainic Acid results in decreased expression of CALB1 mRNA CTD PMID:17997037 Calb1 Rat ketoconazole decreases expression ISO Calb1 (Mus musculus) 6480464 Ketoconazole results in decreased expression of CALB1 mRNA CTD PMID:31099283 Calb1 Rat lead diacetate increases expression EXP 6480464 lead acetate results in increased expression of CALB1 mRNA CTD PMID:33862172 Calb1 Rat Mecamylamine multiple interactions EXP 6480464 Mecamylamine inhibits the reaction [Nicotine results in increased expression of CALB1 protein] CTD PMID:11226671 Calb1 Rat menadione increases expression ISO Calb1 (Mus musculus) 6480464 Vitamin K 3 results in increased expression of CALB1 mRNA CTD PMID:30453296 Calb1 Rat mercury dibromide increases expression ISO CALB1 (Homo sapiens) 6480464 mercuric bromide results in increased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat mercury dibromide multiple interactions ISO CALB1 (Homo sapiens) 6480464 [NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB1 mRNA CTD PMID:27188386 Calb1 Rat methimazole increases expression EXP 6480464 Methimazole results in increased expression of CALB1 protein CTD PMID:20347957 Calb1 Rat morphine increases expression ISO Calb1 (Mus musculus) 6480464 Morphine results in increased expression of CALB1 mRNA CTD PMID:21178816 Calb1 Rat nicotine increases expression EXP 6480464 Nicotine results in increased expression of CALB1 protein CTD PMID:11226671 Calb1 Rat nicotine multiple interactions EXP 6480464 Mecamylamine inhibits the reaction [Nicotine results in increased expression of CALB1 protein] CTD PMID:11226671 Calb1 Rat ochratoxin A decreases expression EXP 6480464 ochratoxin A results in decreased expression of CALB1 protein CTD PMID:31369848 Calb1 Rat ouabain decreases expression EXP 6480464 Ouabain results in decreased expression of CALB1 protein CTD PMID:20105455 Calb1 Rat p-chloromercuribenzoic acid increases expression ISO CALB1 (Homo sapiens) 6480464 p-Chloromercuribenzoic Acid results in increased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat paracetamol increases expression ISO CALB1 (Homo sapiens) 6480464 Acetaminophen results in increased expression of CALB1 mRNA CTD PMID:26690555 Calb1 Rat PCB138 multiple interactions ISO Calb1 (Mus musculus) 6480464 [2 more ... CTD PMID:25510870 Calb1 Rat PCB138 increases expression EXP 6480464 2 more ... CTD PMID:21673325 Calb1 Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Calb1 (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CALB1 mRNA CTD PMID:36331819 Calb1 Rat phenylmercury acetate increases expression ISO CALB1 (Homo sapiens) 6480464 Phenylmercuric Acetate results in increased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat phenylmercury acetate multiple interactions ISO CALB1 (Homo sapiens) 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of CALB1 mRNA CTD PMID:27188386 Calb1 Rat picrotoxin decreases expression EXP 6480464 Picrotoxin results in decreased expression of CALB1 protein CTD PMID:15382257 Calb1 Rat progesterone multiple interactions ISO Calb1 (Mus musculus) 6480464 CALB1 protein inhibits the reaction [Progesterone results in increased expression of BAX protein] more ... CTD PMID:17556502 and PMID:21882229 Calb1 Rat progesterone increases expression ISO Calb1 (Mus musculus) 6480464 Progesterone results in increased expression of CALB1 mRNA CTD PMID:22238285 Calb1 Rat progesterone decreases expression ISO Calb1 (Mus musculus) 6480464 Progesterone results in decreased expression of CALB1 mRNA CTD PMID:17556502 Calb1 Rat quercetin decreases expression ISO CALB1 (Homo sapiens) 6480464 Quercetin results in decreased expression of CALB1 protein CTD PMID:19207037 Calb1 Rat rotenone decreases expression EXP 6480464 Rotenone results in decreased expression of CALB1 mRNA CTD PMID:19013527 Calb1 Rat SB 431542 multiple interactions ISO CALB1 (Homo sapiens) 6480464 [NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ... CTD PMID:27188386 Calb1 Rat simvastatin multiple interactions ISO Calb1 (Mus musculus) 6480464 Simvastatin inhibits the reaction [Oxygen deficiency results in decreased expression of CALB1 mRNA] CTD PMID:16373842 Calb1 Rat sodium arsenite increases expression ISO CALB1 (Homo sapiens) 6480464 sodium arsenite results in increased expression of CALB1 mRNA CTD PMID:34032870 Calb1 Rat sodium fluoride decreases expression EXP 6480464 Sodium Fluoride results in decreased expression of CALB1 mRNA CTD PMID:27257137 Calb1 Rat tacrolimus hydrate decreases expression EXP 6480464 Tacrolimus results in decreased expression of CALB1 mRNA and Tacrolimus results in decreased expression of CALB1 protein CTD PMID:14978156 and PMID:21865292 Calb1 Rat testosterone decreases expression ISO Calb1 (Mus musculus) 6480464 Testosterone results in decreased expression of CALB1 mRNA and Testosterone results in decreased expression of CALB1 protein CTD PMID:20090667 Calb1 Rat thalidomide decreases expression ISO CALB1 (Homo sapiens) 6480464 Thalidomide results in decreased expression of CALB1 mRNA CTD PMID:24154490 Calb1 Rat thallium multiple interactions EXP 6480464 [thallium sulfate results in increased abundance of Thallium] which results in decreased expression of CALB1 mRNA CTD PMID:39361050 Calb1 Rat thallium sulfate multiple interactions EXP 6480464 [thallium sulfate results in increased abundance of Thallium] which results in decreased expression of CALB1 mRNA CTD PMID:39361050 Calb1 Rat titanium dioxide increases expression ISO Calb1 (Mus musculus) 6480464 titanium dioxide results in increased expression of CALB1 mRNA CTD PMID:29264374 Calb1 Rat trichostatin A decreases expression ISO CALB1 (Homo sapiens) 6480464 trichostatin A results in decreased expression of CALB1 mRNA CTD PMID:24935251 Calb1 Rat triphenyl phosphate affects expression ISO CALB1 (Homo sapiens) 6480464 triphenyl phosphate affects the expression of CALB1 mRNA CTD PMID:37042841 Calb1 Rat uranium atom decreases expression EXP 6480464 Uranium results in decreased expression of CALB1 mRNA CTD PMID:17118558 Calb1 Rat valproic acid increases expression ISO Calb1 (Mus musculus) 6480464 Valproic Acid results in increased expression of CALB1 protein CTD PMID:24204683 Calb1 Rat valproic acid decreases expression ISO CALB1 (Homo sapiens) 6480464 Valproic Acid results in decreased expression of CALB1 mRNA CTD PMID:26272509 Calb1 Rat valproic acid increases expression ISO CALB1 (Homo sapiens) 6480464 Valproic Acid results in increased expression of CALB1 mRNA CTD PMID:24383497 more ... Calb1 Rat valproic acid affects expression ISO CALB1 (Homo sapiens) 6480464 Valproic Acid affects the expression of CALB1 mRNA CTD PMID:25979313 Calb1 Rat vancomycin increases expression ISO Calb1 (Mus musculus) 6480464 Vancomycin results in increased expression of CALB1 mRNA CTD PMID:18930951 Calb1 Rat vancomycin decreases expression EXP 6480464 Vancomycin results in decreased expression of CALB1 mRNA CTD PMID:18289764 Calb1 Rat vandetanib increases expression ISO CALB1 (Homo sapiens) 6480464 vandetanib results in increased expression of CALB1 mRNA CTD PMID:16052530 Calb1 Rat vinclozolin increases expression EXP 6480464 vinclozolin results in increased expression of CALB1 mRNA CTD PMID:23034163 Calb1 Rat vorinostat decreases expression ISO CALB1 (Homo sapiens) 6480464 vorinostat results in decreased expression of CALB1 mRNA CTD PMID:27188386
(1->4)-beta-D-glucan (ISO) (S)-nicotine (EXP) 1,1-dichloroethene (ISO) 1,2-dichloroethane (ISO) 17alpha-ethynylestradiol (ISO) 2,2',4,4',5,5'-hexachlorobiphenyl (ISO) 2,2',5,5'-tetrachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 3H-1,2-dithiole-3-thione (EXP) 6-propyl-2-thiouracil (EXP) acrylamide (ISO) adefovir (EXP) aflatoxin B1 (ISO) all-trans-retinoic acid (ISO) ammonium chloride (EXP) aristolochic acid A (EXP) arsenite(3-) (ISO) bacitracin (EXP) belinostat (ISO) benzo[a]pyrene (ISO) bisphenol A (EXP,ISO) Brodifacoum (EXP) buta-1,3-diene (ISO) cadmium dichloride (EXP) cadmium sulfate (ISO) calcitriol (EXP,ISO) calcium atom (EXP) calcium(0) (EXP) captopril (ISO) cefaloridine (EXP) CGP 52608 (ISO) cisplatin (EXP,ISO) copper(II) chloride (ISO) copper(II) sulfate (ISO) cycloheximide (ISO) cyclosporin A (EXP) cytarabine (EXP) DDE (ISO) dexamethasone (EXP) diethanolamine (ISO) diethylstilbestrol (ISO) dioxygen (ISO) dorsomorphin (ISO) entinostat (ISO) ethanol (EXP,ISO) furosemide (ISO) genistein (ISO) gentamycin (EXP,ISO) glycidol (EXP) ivermectin (ISO) kainic acid (ISO) ketoconazole (ISO) lead diacetate (EXP) Mecamylamine (EXP) menadione (ISO) mercury dibromide (ISO) methimazole (EXP) morphine (ISO) nicotine (EXP) ochratoxin A (EXP) ouabain (EXP) p-chloromercuribenzoic acid (ISO) paracetamol (ISO) PCB138 (EXP,ISO) perfluorooctane-1-sulfonic acid (ISO) phenylmercury acetate (ISO) picrotoxin (EXP) progesterone (ISO) quercetin (ISO) rotenone (EXP) SB 431542 (ISO) simvastatin (ISO) sodium arsenite (ISO) sodium fluoride (EXP) tacrolimus hydrate (EXP) testosterone (ISO) thalidomide (ISO) thallium (EXP) thallium sulfate (EXP) titanium dioxide (ISO) trichostatin A (ISO) triphenyl phosphate (ISO) uranium atom (EXP) valproic acid (ISO) vancomycin (EXP,ISO) vandetanib (ISO) vinclozolin (EXP) vorinostat (ISO)
Cellular Component
axon (IDA,IEA,ISO) calyx of Held (IDA) cuticular plate (IDA) cytoplasm (IEA,ISO) cytosol (IBA,IEA,ISO) dendrite (IBA,IEA,ISO) GABA-ergic synapse (IEA,ISO) glutamatergic synapse (IEA,ISO) hippocampal mossy fiber to CA3 synapse (IEA,ISO) neuron projection (IEA,ISO) neuronal cell body (IEA,ISO) nucleus (IBA,IEA,ISO) postsynapse (IDA,IMP) postsynaptic cytosol (IDA) presynaptic cytosol (IDA) stereocilium (IDA) synapse (IBA,IEA,ISO) terminal bouton (HDA,IBA,ISO)
1.
Tracking the expression of excitatory and inhibitory neurotransmission-related proteins and neuroplasticity markers after noise induced hearing loss.
Browne CJ, etal., PLoS One. 2012;7(3):e33272. doi: 10.1371/journal.pone.0033272. Epub 2012 Mar 12.
2.
Overexpression of calbindin D(28k) in dentate gyrus granule cells alters mossy fiber presynaptic function and impairs hippocampal-dependent memory.
Dumas TC, etal., Hippocampus 2004;14(6):701-9.
3.
Developmental expression of the Ca2+-binding proteins calretinin and parvalbumin at the calyx of Held of rats and mice.
Felmy F and Schneggenburger R, Eur J Neurosci. 2004 Sep;20(6):1473-82. doi: 10.1111/j.1460-9568.2004.03604.x.
4.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.
Rat ISS GO annotations from GOA human gene data--August 2006
GOA data from the GO Consortium
6.
The concentrations of calcium buffering proteins in mammalian cochlear hair cells.
Hackney CM, etal., J Neurosci. 2005 Aug 24;25(34):7867-75.
7.
Structural characterization of the conformational change in calbindin-D28k upon calcium binding using differential surface modification analyzed by mass spectrometry.
Hobbs CA, etal., Biochemistry. 2009 Sep 15;48(36):8603-14. doi: 10.1021/bi900350q.
8.
Rat brain calbindin D28: six domain structure and extensive amino acid homology with chicken calbindin D28.
Hunziker W and Schrickel S, Mol Endocrinol 1988 May;2(5):465-73.
9.
Ankyrin-G coordinates assembly of the spectrin-based membrane skeleton, voltage-gated sodium channels, and L1 CAMs at Purkinje neuron initial segments.
Jenkins SM and Bennett V, J Cell Biol. 2001 Nov 26;155(5):739-46. Epub 2001 Nov 26.
10.
Light microscopic study of GluR1 and calbindin expression in interneurons of neocortical microgyral malformations.
Kharazia VN, etal., Neuroscience 2003;120(1):207-18.
11.
Cloning and analysis of calbindin-D28K cDNA and its expression in the central nervous system.
Lomri N, etal., Gene 1989 Aug 1;80(1):87-98.
12.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
13.
Synaptic connections of distinct interneuronal subpopulations in the rat basolateral amygdalar nucleus.
Muller JF, etal., J Comp Neurol 2003 Feb 10;456(3):217-36.
14.
Electronic Transfer of LocusLink and RefSeq Data
NCBI rat LocusLink and RefSeq merged data July 26, 2002
15.
Ultrastructural localization of calbindin-D28k and GABA in the matrix compartment of the rat caudate-putamen nuclei.
Pickel VM and Heras A, Neuroscience. 1996 Mar;71(1):167-78.
16.
GOA pipeline
RGD automated data pipeline
17.
ClinVar Automated Import and Annotation Pipeline
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
19.
Calbindin D28k targets myo-inositol monophosphatase in spines and dendrites of cerebellar Purkinje neurons.
Schmidt H, etal., Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5850-5. doi: 10.1073/pnas.0407855102. Epub 2005 Apr 4.
20.
Cytosolic Ca2+ buffers.
Schwaller B, Cold Spring Harb Perspect Biol. 2010 Nov;2(11):a004051. doi: 10.1101/cshperspect.a004051. Epub 2010 Oct 13.
21.
Immunohistochemical localization of calcium-binding proteins in the brainstem vestibular nuclei of the jaundiced Gunn rat.
Shaia WT, etal., Hear Res 2002 Nov;173(1-2):82-90.
22.
Alcohol-induced cognitive deficits are associated with decreased circulating levels of the neurotrophin BDNF in humans and rats.
Silva-Peña D, etal., Addict Biol. 2019 Sep;24(5):1019-1033. doi: 10.1111/adb.12668. Epub 2018 Sep 12.
23.
Changes in calcium-binding protein expression in the auditory brainstem nuclei of the jaundiced Gunn rat.
Spencer RF, etal., Hear Res 2002 Sep;171(1-2):129-141.
24.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
25.
Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients.
Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.
26.
Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins.
Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
27.
Nucleotide sequence of cDNA to mRNA for a cerebellar Ca-binding protein, spot 35 protein.
Yamakuni T, etal., Nucleic Acids Res 1986 Aug 26;14(16):6768.
Calb1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 34,172,612 - 34,199,555 (+) NCBI GRCr8 mRatBN7.2 5 29,375,624 - 29,402,532 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 29,375,642 - 29,402,431 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 31,531,877 - 31,556,210 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 33,124,545 - 33,148,878 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 33,084,720 - 33,109,051 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 29,538,380 - 29,562,774 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 29,538,380 - 29,562,773 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 34,217,930 - 34,242,324 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 30,455,665 - 30,480,122 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 30,455,683 - 30,480,116 (+) NCBI Celera 5 28,581,243 - 28,605,619 (+) NCBI Celera Cytogenetic Map 5 q13 NCBI
CALB1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 90,058,608 - 90,082,879 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 90,058,608 - 90,095,475 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 91,070,836 - 91,095,107 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 91,140,014 - 91,164,283 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 8 91,140,013 - 91,164,283 NCBI Celera 8 87,265,760 - 87,290,030 (-) NCBI Celera Cytogenetic Map 8 q21.3 ENTREZGENE HuRef 8 86,281,630 - 86,305,899 (-) NCBI HuRef CHM1_1 8 91,111,762 - 91,136,036 (-) NCBI CHM1_1 T2T-CHM13v2.0 8 91,182,279 - 91,206,531 (-) NCBI T2T-CHM13v2.0
Calb1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 15,881,264 - 15,906,709 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 15,881,264 - 15,908,064 (+) Ensembl GRCm39 Ensembl GRCm38 4 15,881,264 - 15,906,709 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 15,881,264 - 15,908,064 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 15,808,411 - 15,833,856 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 15,808,411 - 15,833,795 (+) NCBI MGSCv36 mm8 Celera 4 15,684,341 - 15,710,097 (+) NCBI Celera Cytogenetic Map 4 A2 NCBI cM Map 4 6.66 NCBI
Calb1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955417 6,942,900 - 6,969,502 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955417 6,944,300 - 6,969,341 (-) NCBI ChiLan1.0 ChiLan1.0
CALB1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 7 107,454,698 - 107,478,231 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 8 82,994,347 - 83,017,871 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 8 86,747,702 - 86,771,995 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 8 88,699,532 - 88,723,814 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 8 88,699,532 - 88,723,814 (-) Ensembl panpan1.1 panPan2
CALB1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 29 35,551,836 - 35,572,985 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 29 35,552,436 - 35,572,925 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 29 35,704,729 - 35,725,872 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 29 35,749,189 - 35,770,350 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 29 35,748,436 - 35,770,338 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 29 35,736,414 - 35,757,553 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 29 35,754,732 - 35,775,854 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 29 36,190,515 - 36,211,601 (-) NCBI UU_Cfam_GSD_1.0
Calb1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 43,910,718 - 43,934,361 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936544 3,858,344 - 3,882,106 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936544 3,858,344 - 3,881,985 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CALB1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 46,701,045 - 46,725,197 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 46,701,276 - 46,723,548 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 51,177,484 - 51,199,916 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CALB1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 8 85,135,956 - 85,160,806 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 8 85,137,528 - 85,160,855 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666039 55,715,695 - 55,740,540 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Calb1
.
Predicted Target Of
Count of predictions: 390 Count of miRNA genes: 220 Interacting mature miRNAs: 261 Transcripts: ENSRNOT00000010845 Prediction methods: Microtar, Miranda, Targetscan Result types: miRGate_prediction
2293666 Bmd38 Bone mineral density QTL 38 4.4 femur size trait (VT:1000369) femoral neck cortical cross-sectional area (CMO:0001702) 5 8948228 53948228 Rat 1578776 Stresp18 Stress response QTL 18 2.9 thymus mass (VT:0004954) thymus wet weight (CMO:0000855) 5 27955440 72955440 Rat 1576314 Eutr1 Estrogen induced uterine response QTL 1 uterus integrity trait (VT:0010575) pyometritis severity score (CMO:0002009) 5 2138965 166875058 Rat 6903306 Scl35 Serum cholesterol QTL 35 2.6 0.0073 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 5 28515489 73515489 Rat 70212 Niddm25 Non-insulin dependent diabetes mellitus QTL 25 3.54 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 5 1 131345958 Rat 1358353 Srcrtb2 Stress Responsive Cort Basal QTL 2 3.48 0.003 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 5 18873947 74251464 Rat 1300117 Hrtrt8 Heart rate QTL 8 3.49 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 5 3844018 47869213 Rat 7394712 Emca13 Estrogen-induced mammary cancer QTL 13 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 5 9823266 99753708 Rat 634305 Mamtr1 Mammary tumor resistance QTL 1 0.0001 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 5 12789751 113558310 Rat 1331771 Rf35 Renal function QTL 35 4.36965 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 5 729470 86724018 Rat 2312562 Pur18 Proteinuria QTL 18 2.6 0.001 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 5 2138965 32656739 Rat 8662454 Vetf3 Vascular elastic tissue fragility QTL 3 27.4 artery integrity trait (VT:0010639) number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) 5 2282226 69540447 Rat 6903292 Stl28 Serum triglyceride level QTL 28 2.6 0.0073 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 5 28515489 73515489 Rat 61462 Niddm10 Non-insulin dependent diabetes mellitus QTL 10 3.9 0.001 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 5 5112159 47171491 Rat 1641903 Alcrsp3 Alcohol response QTL 3 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 5 12689285 57689285 Rat 1578767 Stresp17 Stress response QTL 17 4.3 0.01 blood aldosterone amount (VT:0005346) plasma aldosterone level (CMO:0000551) 5 27955440 72955440 Rat 1331756 Rf34 Renal function QTL 34 4.16275 kidney blood vessel physiology trait (VT:0100012) absolute change in renal blood flow rate (CMO:0001168) 5 1 90450412 Rat 8552954 Pigfal14 Plasma insulin-like growth factor 1 level QTL 14 9 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 5 21226744 66226744 Rat 1549901 Neudeg2 Neurodegradation QTL 2 4 0 nervous system integrity trait (VT:0010566) mononuclear cell count (CMO:0002119) 5 24838710 44045280 Rat 1600358 Mamtr5 Mammary tumor resistance QTL 5 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 5 18873947 63873947 Rat
D26352
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 5 29,399,246 - 29,399,387 (+) MAPPER mRatBN7.2 Rnor_6.0 5 29,561,968 - 29,562,108 NCBI Rnor6.0 Rnor_5.0 5 34,241,518 - 34,241,658 UniSTS Rnor5.0 RGSC_v3.4 5 30,479,316 - 30,479,456 UniSTS RGSC3.4 Celera 5 28,604,813 - 28,604,953 UniSTS Cytogenetic Map 5 q13 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
10
25
109
76
73
45
25
45
2
175
68
93
45
57
28
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000010845 ⟹ ENSRNOP00000010845
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 5 29,375,643 - 29,400,051 (+) Ensembl Rnor_6.0 Ensembl 5 29,538,380 - 29,562,773 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000106067 ⟹ ENSRNOP00000088742
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 5 29,375,642 - 29,400,052 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000119300 ⟹ ENSRNOP00000085057
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 5 29,375,642 - 29,402,431 (+) Ensembl
RefSeq Acc Id:
NM_031984 ⟹ NP_114190
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 5 34,172,682 - 34,197,076 (+) NCBI mRatBN7.2 5 29,375,659 - 29,400,053 (+) NCBI Rnor_6.0 5 29,538,380 - 29,562,774 (+) NCBI Rnor_5.0 5 34,217,930 - 34,242,324 (+) NCBI RGSC_v3.4 5 30,455,665 - 30,480,122 (+) RGD Celera 5 28,581,243 - 28,605,619 (+) RGD
Sequence:
CCCGAACGGAGCAGCACCGCGGACAGCGCCCGGCCGCGCCGCGCCCAGCTCAGCCTGCTCAGCCCTCTCATCCCGAGGTTCGCGCTCAGCGCTCTCTCAAACTAGCCGCTGCACCATGGCAGAATCCC
hide sequence
RefSeq Acc Id:
XM_039110854 ⟹ XP_038966782
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 5 34,172,612 - 34,199,555 (+) NCBI mRatBN7.2 5 29,375,624 - 29,402,532 (+) NCBI
RefSeq Acc Id:
NP_114190 ⟸ NM_031984
- UniProtKB:
P07171 (UniProtKB/Swiss-Prot), A6IIA7 (UniProtKB/TrEMBL), A0A8I6AA30 (UniProtKB/TrEMBL)
- Sequence:
MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLK
hide sequence
Ensembl Acc Id:
ENSRNOP00000010845 ⟸ ENSRNOT00000010845
RefSeq Acc Id:
XP_038966782 ⟸ XM_039110854
- Peptide Label:
isoform X1
- UniProtKB:
A0A8I6GCE9 (UniProtKB/TrEMBL), A0A8I6AA30 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSRNOP00000085057 ⟸ ENSRNOT00000119300
Ensembl Acc Id:
ENSRNOP00000088742 ⟸ ENSRNOT00000106067
RGD ID: 13693578 Promoter ID: EPDNEW_R4103 Type: single initiation site Name: Calb1_1 Description: calbindin 1 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 5 29,538,362 - 29,538,422 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2002-06-10
Calb1
calbindin 1
Name updated
70584 APPROVED
Note Type
Note
Reference
gene_expression
expressed in the cerebellum, hippocampus, retina, and kidney
68751
gene_product
member of the EF-hand family of calcium binding proteins
68751
