Calb1 (calbindin 1) - Rat Genome Database

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Gene: Calb1 (calbindin 1) Chinchilla lanigera
Analyze
Symbol: Calb1
Name: calbindin 1
RGD ID: 8795560
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration (ortholog); INVOLVED IN cochlea development (ortholog); learning or memory (ortholog); locomotory behavior (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); bilirubin metabolic disorder (ortholog); gestational diabetes (ortholog); FOUND IN neuronal cell body; terminal bouton; axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calbindin; calbindin 1, 28kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554176,942,900 - 6,969,502 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554176,944,300 - 6,969,341 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. Distribution of calbindin D-28k immunoreactivity in the cochlear nucleus of the young adult chinchilla. Frisina RD, etal., Hear Res. 1995 May;85(1-2):53-68.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Calb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554176,942,900 - 6,969,502 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554176,944,300 - 6,969,341 (-)NCBIChiLan1.0ChiLan1.0
CALB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38890,058,608 - 90,082,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl890,058,608 - 90,095,475 (-)EnsemblGRCh38hg38GRCh38
GRCh37891,070,836 - 91,095,107 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36891,140,014 - 91,164,283 (-)NCBINCBI36Build 36hg18NCBI36
Build 34891,140,013 - 91,164,283NCBI
Celera887,265,760 - 87,290,030 (-)NCBICelera
Cytogenetic Map8q21.3ENTREZGENE
HuRef886,281,630 - 86,305,899 (-)NCBIHuRef
CHM1_1891,111,762 - 91,136,036 (-)NCBICHM1_1
T2T-CHM13v2.0891,182,279 - 91,206,531 (-)NCBIT2T-CHM13v2.0
Calb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39415,881,264 - 15,906,709 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl415,881,264 - 15,908,064 (+)EnsemblGRCm39 Ensembl
GRCm38415,881,264 - 15,906,709 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl415,881,264 - 15,908,064 (+)EnsemblGRCm38mm10GRCm38
MGSCv37415,808,411 - 15,833,856 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36415,808,411 - 15,833,795 (+)NCBIMGSCv36mm8
Celera415,684,341 - 15,710,097 (+)NCBICelera
Cytogenetic Map4A2NCBI
cM Map46.66NCBI
Calb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8534,172,612 - 34,199,555 (+)NCBIGRCr8
mRatBN7.2529,375,624 - 29,402,532 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl529,375,642 - 29,402,431 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx531,531,877 - 31,556,210 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0533,124,545 - 33,148,878 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0533,084,720 - 33,109,051 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0529,538,380 - 29,562,774 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl529,538,380 - 29,562,773 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0534,217,930 - 34,242,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4530,455,665 - 30,480,122 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1530,455,683 - 30,480,116 (+)NCBI
Celera528,581,243 - 28,605,619 (+)NCBICelera
Cytogenetic Map5q13NCBI
CALB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27107,454,698 - 107,478,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1882,994,347 - 83,017,871 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0886,747,702 - 86,771,995 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1888,699,532 - 88,723,814 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl888,699,532 - 88,723,814 (-)Ensemblpanpan1.1panPan2
CALB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12935,551,836 - 35,572,985 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2935,552,436 - 35,572,925 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2935,704,729 - 35,725,872 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02935,749,189 - 35,770,350 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2935,748,436 - 35,770,338 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12935,736,414 - 35,757,553 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02935,754,732 - 35,775,854 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02936,190,515 - 36,211,601 (-)NCBIUU_Cfam_GSD_1.0
Calb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,910,718 - 43,934,361 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365443,858,344 - 3,882,106 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365443,858,344 - 3,881,985 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl446,701,045 - 46,725,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1446,701,276 - 46,723,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2451,177,484 - 51,199,916 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1885,135,956 - 85,160,806 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl885,137,528 - 85,160,855 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603955,715,695 - 55,740,540 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247441,929,988 - 1,963,464 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247441,930,085 - 1,960,950 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000014305   ⟹   ENSCLAP00000014147
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554176,942,900 - 6,969,502 (-)Ensembl
RefSeq Acc Id: XM_005381764   ⟹   XP_005381821
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554176,944,300 - 6,969,341 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381821 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014147
  ENSCLAP00000014147.1
RefSeq Acc Id: XP_005381821   ⟸   XM_005381764
- UniProtKB: A0A8C2VDY1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000014147   ⟸   ENSCLAT00000014305
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009767 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014305 ENTREZGENE
  ENSCLAT00000014305.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Calbindin UniProtKB/TrEMBL
  Calbindin_Ca-bind UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Calb1 ENTREZGENE
PANTHER CALBINDIN UniProtKB/TrEMBL
  PTHR19972:SF14 UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2VDY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Calb1  calbindin 1    calbindin 1, 28kDa  Symbol and/or name change 5135510 APPROVED