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Gene: Taf3 (TATA-box binding protein associated factor 3) Rattus norvegicus

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Symbol:

Taf3 (Ensembl: Atp5f1c)

Name:

TATA-box binding protein associated factor 3 (Ensembl:ATP synthase F1 subunit gamma)

RGD ID:

2324594

Description:

Predicted to enable p53 binding activity and transcription regulator inhibitor activity. Predicted to be involved in maintenance of protein location in nucleus; regulation of DNA-templated transcription; and transcription by RNA polymerase II. Predicted to be located in male germ cell nucleus; nuclear membrane; and nucleoplasm. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF3 (TATA-box binding protein associated factor 3); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH bisphenol A; Brodifacoum; oxaliplatin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100360100; LOC307109; TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa; transcription initiation factor TFIID subunit 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	73,365,162 - 73,518,053 (+)	NCBI		GRCr8
mRatBN7.2	17	68,455,389 - 68,608,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	68,423,909 - 68,608,367 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	71,937,927 - 72,090,957 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	75,766,657 - 75,919,691 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	69,809,719 - 69,962,752 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	72,240,785 - 72,393,448 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	72,209,373 - 72,394,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	73,926,501 - 74,078,577 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	79,770,612 - 79,946,159 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	79,781,444 - 79,955,112 (+)	NCBI
Celera	17	67,941,951 - 68,094,987 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	hypoparathyroidism-deafness-renal disease syndrome		ISO	RGD:1323524	8554872	ClinVar Annotator: match by term: Hypoparathyroidism, deafness, renal disease syndrome	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	RGD:1323525	6480464	1,2-Dimethylhydrazine results in decreased expression of TAF3 mRNA	CTD	PMID:22206623
Taf3	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	RGD:1323525	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TAF3 mRNA	CTD	PMID:17942748
Taf3	Rat	17alpha-ethynylestradiol	increases expression	ISO	RGD:1323525	6480464	Ethinyl Estradiol results in increased expression of TAF3 mRNA	CTD	PMID:17942748
Taf3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1323525	6480464	Tetrachlorodibenzodioxin affects the expression of TAF3 mRNA	CTD	PMID:21570461
Taf3	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1323525	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TAF3 mRNA	CTD	PMID:17942748
Taf3	Rat	5-fluorouracil	affects expression	ISO	RGD:1323524	6480464	Fluorouracil affects the expression of TAF3 mRNA	CTD	PMID:16584549
Taf3	Rat	aflatoxin B1	increases methylation	ISO	RGD:1323524	6480464	Aflatoxin B1 results in increased methylation of TAF3 gene	CTD	PMID:27153756
Taf3	Rat	benzo[a]pyrene	decreases methylation	ISO	RGD:1323524	6480464	Benzo(a)pyrene results in decreased methylation of TAF3 promoter	CTD	PMID:27901495
Taf3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TAF3 mRNA	CTD	PMID:30816183\|PMID:32528016
Taf3	Rat	Brodifacoum	increases expression	EXP		6480464	bromfenacoum results in increased expression of TAF3 protein	CTD	PMID:28903499
Taf3	Rat	caffeine	affects phosphorylation	ISO	RGD:1323524	6480464	Caffeine affects the phosphorylation of TAF3 protein	CTD	PMID:35688186
Taf3	Rat	carbamazepine	affects expression	ISO	RGD:1323524	6480464	Carbamazepine affects the expression of TAF3 mRNA	CTD	PMID:24752500
Taf3	Rat	cisplatin	increases expression	ISO	RGD:1323524	6480464	Cisplatin results in increased expression of TAF3 mRNA	CTD	PMID:27392435
Taf3	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1323524	6480464	di-n-butylphosphoric acid affects the expression of TAF3 mRNA	CTD	PMID:37042841
Taf3	Rat	diclofenac	affects expression	ISO	RGD:1323524	6480464	Diclofenac affects the expression of TAF3 mRNA	CTD	PMID:24752500
Taf3	Rat	dicrotophos	increases expression	ISO	RGD:1323524	6480464	dicrotophos results in increased expression of TAF3 mRNA	CTD	PMID:28302478
Taf3	Rat	doxorubicin	decreases expression	ISO	RGD:1323524	6480464	Doxorubicin results in decreased expression of TAF3 mRNA	CTD	PMID:29803840
Taf3	Rat	ethyl methanesulfonate	increases expression	ISO	RGD:1323524	6480464	Ethyl Methanesulfonate results in increased expression of TAF3 mRNA	CTD	PMID:23649840
Taf3	Rat	formaldehyde	decreases expression	ISO	RGD:1323524	6480464	Formaldehyde results in decreased expression of TAF3 mRNA	CTD	PMID:20655997
Taf3	Rat	formaldehyde	increases expression	ISO	RGD:1323524	6480464	Formaldehyde results in increased expression of TAF3 mRNA	CTD	PMID:23649840
Taf3	Rat	FR900359	affects phosphorylation	ISO	RGD:1323524	6480464	FR900359 affects the phosphorylation of TAF3 protein	CTD	PMID:37730182
Taf3	Rat	GSK-J4	increases expression	ISO	RGD:1323524	6480464	GSK-J4 results in increased expression of TAF3 mRNA	CTD	PMID:29301935
Taf3	Rat	hydroquinone	decreases expression	ISO	RGD:1323524	6480464	hydroquinone results in decreased expression of TAF3 mRNA	CTD	PMID:31256213
Taf3	Rat	josamycin	affects response to substance	ISO	RGD:1323524	6480464	TAF3 protein affects the susceptibility to Josamycin	CTD	PMID:31915244
Taf3	Rat	methyl methanesulfonate	increases expression	ISO	RGD:1323524	6480464	Methyl Methanesulfonate results in increased expression of TAF3 mRNA	CTD	PMID:23649840
Taf3	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of TAF3 mRNA	CTD	PMID:25729387
Taf3	Rat	paracetamol	increases expression	ISO	RGD:1323524	6480464	Acetaminophen results in increased expression of TAF3 mRNA	CTD	PMID:22230336
Taf3	Rat	quercetin	increases expression	ISO	RGD:1323524	6480464	Quercetin results in increased expression of TAF3 mRNA	CTD	PMID:21632981
Taf3	Rat	silicon dioxide	decreases expression	ISO	RGD:1323524	6480464	Silicon Dioxide analog results in decreased expression of TAF3 mRNA	CTD	PMID:25895662
Taf3	Rat	sodium arsenite	increases expression	ISO	RGD:1323524	6480464	sodium arsenite results in increased expression of TAF3 mRNA	CTD	PMID:38568856
Taf3	Rat	sunitinib	increases expression	ISO	RGD:1323524	6480464	Sunitinib results in increased expression of TAF3 mRNA	CTD	PMID:31533062
Taf3	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of TAF3 mRNA	CTD	PMID:34492290
Taf3	Rat	titanium dioxide	increases methylation	ISO	RGD:1323525	6480464	titanium dioxide results in increased methylation of TAF3 gene	CTD	PMID:35295148
Taf3	Rat	titanium dioxide	increases methylation	ISO	RGD:1323524	6480464	titanium dioxide results in increased methylation of TAF3 promoter	CTD	PMID:34973136
Taf3	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of TAF3 mRNA	CTD	PMID:25729387
Taf3	Rat	topotecan	decreases expression	EXP		6480464	Topotecan results in decreased expression of TAF3 mRNA	CTD	PMID:25729387
Taf3	Rat	urethane	increases expression	ISO	RGD:1323524	6480464	Urethane results in increased expression of TAF3 mRNA	CTD	PMID:28818685
Taf3	Rat	valproic acid	affects expression	ISO	RGD:1323524	6480464	Valproic Acid affects the expression of TAF3 mRNA	CTD	PMID:25979313
Taf3	Rat	valproic acid	increases expression	ISO	RGD:1323524	6480464	Valproic Acid results in increased expression of TAF3 mRNA	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	ATP biosynthetic process	involved_in	IEA	UniProtKB-KW:KW-0066	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	biological_process		ND		1598407	12/2014: no relevant rat data	RGD
Taf3	Rat	maintenance of protein location in nucleus	involved_in	ISO	RGD:1323524	1624291	PMID:15870280	RGD	PMID:15870280
Taf3	Rat	monoatomic ion transport	involved_in	IEA	UniProtKB-KW:KW-0406	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	mRNA transcription by RNA polymerase II	involved_in	ISO	RGD:1323524	1624291	PMID:17884155	RGD	PMID:17884155
Taf3	Rat	negative regulation of DNA-binding transcription factor activity	involved_in	ISO	RGD:1323525	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	negative regulation of signal transduction by p53 class mediator	involved_in	ISO	RGD:1323524	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	negative regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:1323524	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	negative regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:1323525	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	positive regulation of transcription initiation by RNA polymerase II	involved_in	ISO	RGD:1323524	1624291	PMID:17884155	RGD	PMID:17884155
Taf3	Rat	proton motive force-driven ATP synthesis	involved_in	IEA	InterPro:IPR000131\|InterPro:IPR035968	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Taf3	Rat	proton transmembrane transport	involved_in	IEA	UniProtKB-KW:KW-0375	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	RNA polymerase II preinitiation complex assembly	involved_in	ISO	RGD:1323524	1624291	PMID:27007846	RGD	PMID:27007846

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	male germ cell nucleus	located_in	ISO	RGD:1323525	1624291	PMID:12665565	RGD	PMID:12665565
Taf3	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Taf3	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	nuclear membrane	located_in	ISO	RGD:1323524	1624291		RGD	GO_REF:0000052
Taf3	Rat	nucleoplasm	located_in	ISO	RGD:1323524	1624291		RGD	GO_REF:0000052
Taf3	Rat	nucleus	located_in	ISO	RGD:1323524	1624291	PMID:15870280, PMID:23332750	RGD	PMID:15870280\|PMID:23332750
Taf3	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Taf3	Rat	proton-transporting ATP synthase complex	part_of	IEA	InterPro:IPR000131\|InterPro:IPR035968	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Taf3	Rat	proton-transporting ATP synthase complex	part_of	IEA	UniProtKB-KW:KW-0139	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	transcription factor TFIID complex	part_of	ISO	RGD:1323524	1624291	PMID:11438666, PMID:23332750, PMID:29111974	RGD	PMID:11438666\|PMID:23332750\|PMID:29111974

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	histone H3K4me3 reader activity	enables	ISO	RGD:1323524	1624291	PMID:17884155	RGD	PMID:17884155
Taf3	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Taf3	Rat	p53 binding	enables	ISO	RGD:1323525	1624291	UniProtKB:P04637 PMID:18549481	RGD	PMID:18549481
Taf3	Rat	protein binding	enables	ISO	RGD:1323525	1624291	UniProtKB:Q6SJ95 PMID:17704303	RGD	PMID:17704303
Taf3	Rat	protein binding	enables	ISO	RGD:1323524	1624291	UniProtKB:P20226\|UniProtKB:P52292\|UniProtKB:P84243\|UniProtKB:Q12962\|UniProtKB:Q14974\|UniProtKB:Q15542\|UniProtKB:Q15543\|UniProtKB:Q16514 PMID:11438666, PMID:15870280, PMID:20953165, PMID:33961781	RGD	PMID:11438666\|PMID:15870280\|PMID:20953165\|PMID:33961781
Taf3	Rat	protein heterodimerization activity	enables	IEA	InterPro:IPR009072	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Taf3	Rat	proton-transporting ATP synthase activity, rotational mechanism	enables	IEA	InterPro:IPR000131\|InterPro:IPR035968	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Taf3	Rat	transcription regulator inhibitor activity	enables	ISO	RGD:1323524	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	transcription regulator inhibitor activity	enables	ISO	RGD:1323525	1624291	PMID:18549481	RGD	PMID:18549481
Taf3	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Taf3	Rat	RNA polymerase II transcription initiation pathway		ISO	RGD:1323524	9681723		RGD

#	Reference Title	Reference Citation
1.	Structural bioinformatics of the general transcription factor TFIID.	Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Comprehensive gene review and curation	RGD comprehensive gene curation

PMID:11438666	PMID:12665565	PMID:15870280	PMID:18549481

Taf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	73,365,162 - 73,518,053 (+)	NCBI		GRCr8
mRatBN7.2	17	68,455,389 - 68,608,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	68,423,909 - 68,608,367 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	71,937,927 - 72,090,957 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	75,766,657 - 75,919,691 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	69,809,719 - 69,962,752 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	72,240,785 - 72,393,448 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	72,209,373 - 72,394,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	73,926,501 - 74,078,577 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	79,770,612 - 79,946,159 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	79,781,444 - 79,955,112 (+)	NCBI
Celera	17	67,941,951 - 68,094,987 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

TAF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	7,818,505 - 8,016,631 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	7,818,497 - 8,016,631 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	7,860,468 - 8,058,594 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	7,900,679 - 8,096,720 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	7,900,678 - 8,047,660	NCBI
Celera	10	7,786,469 - 7,982,025 (+)	NCBI		Celera
Cytogenetic Map	10	p14	NCBI
HuRef	10	7,778,797 - 7,975,208 (+)	NCBI		HuRef
CHM1_1	10	7,860,425 - 8,057,017 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	7,819,254 - 8,017,393 (+)	NCBI		T2T-CHM13v2.0

Taf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	9,919,363 - 10,053,420 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	9,919,363 - 10,053,407 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	9,914,552 - 10,048,609 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	9,914,552 - 10,048,596 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	9,836,179 - 9,970,236 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	9,833,449 - 9,966,469 (-)	NCBI		MGSCv36	mm8
Celera	2	9,851,959 - 9,987,814 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	6.74	NCBI

Taf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955421	24,263,395 - 24,414,472 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	20,369,869 - 20,564,552 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	20,375,197 - 20,569,394 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	7,851,294 - 8,047,100 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	7,831,826 - 8,026,345 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TAF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	28,121,719 - 28,298,961 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	28,122,649 - 28,298,946 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	25,157,471 - 25,337,783 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	28,499,083 - 28,679,397 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	28,499,869 - 28,679,399 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	25,605,575 - 25,785,860 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	26,448,343 - 26,627,805 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	27,165,472 - 27,345,885 (-)	NCBI		UU_Cfam_GSD_1.0

Taf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	30,668,943 - 30,836,984 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	6,834,103 - 7,002,198 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	6,834,935 - 7,002,167 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	63,422,204 - 63,576,378 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	63,422,184 - 63,576,400 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	69,631,749 - 69,671,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	7,865,433 - 8,063,932 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	7,865,519 - 8,063,923 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	13,261,359 - 13,461,055 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	2,791,610 - 2,959,236 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	2,791,406 - 2,958,886 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Taf3
378 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	48
Count of miRNA genes:	43
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000025993
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	57246723	70156904	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	57246723	70852846	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63640009	73951021	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
3	11	43	82	57	60	41	19	41	160	73	74	35	41	19


RefSeq Transcripts	NM_001271342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_225559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NM_001271342 ⟹ NP_001258271

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	73,365,162 - 73,518,053 (+)	NCBI
mRatBN7.2	17	68,455,461 - 68,608,367 (+)	NCBI
Rnor_6.0	17	72,240,852 - 72,393,448 (+)	NCBI
Rnor_5.0	17	73,926,501 - 74,078,577 (+)	NCBI
Celera	17	67,941,951 - 68,094,987 (+)	NCBI

Sequence:

show sequence

GGTCGCTCGGGGCCGGAGGGGGACGATTTCCCCGCCGCGGGGCCCCCAGAGAATGAATCGGGGGCTCTGCTGAAGCGAGACGGCAGGGCTGGAGAGCAGTGGCAGCAAAGGGCTGCGGTGGCGTCCAC
GCAGCGGGATGTGCGAGAGTTACTCCAGGTCGTTGTTGAGGGTCTCGGTGGCGCAGATCTGCCAGGCGCTGGGCTGGGACTCGGTGCAGCTCAGTGCCTGCCACCTCCTCACCGACGTCCTGCAGCGT
TATCTGCAGCAGCTGGGCCGGGGCTGCCATCGGTACTCTGAACTCTATGGCCGAACAGATCCCATTTTGGATGACGTTGGTGAAGCCTTCCAACTTATGGGGGTTAATCTGCACGAACTAGAAGACTA
TATTCATAATATTGAACCTGTCACTTTCCCACATCAAATTCCTTCTTTTCCTGTTAGCAAGAACAGTGTCCTTCAGTTTCCTCAGCCAGGAAGTAAAGATGCAGAGGAAAGAAAAGACTACATTCCGG
ATTACCTGCCCCCCATCGTGTCTTCTCAAGAAGAGGAGGAAGAGGAACAGGTGCCCACTGATGGGGGCACCTCAGCAGAAGCCATGCAGGTGCCCTTGGAAGAAGATGATGAATTGGAGGAGGAGGAA
GTCATCAATGATGAGAACTTCTTGGGTAAGAGGCCACTGGACAGTCCTGAAGTGGAAGAAATGCCCTCCATGAAGCGCCCACGACTCCTGAACTCTAAAGGGGACTCCCTAGATGTTGTGTTGTTAGA
AGCACGAGAACCTCTCAGCTCAATAAATCCACAGAAGATCCCACCAATGCTTTCTCCTGTGCATGTCCAGGACAGTACGGATCTGGCCCCTCCATCACCAGAGCCCCCCATGCTGGCTCCATTTGCAA
AGTCACAACTACCAATTGCAAAGCCATTAGAAACAAAACCATTTACACCGAAAACAAAGACTAAAGCTAGCTCTCCCGGTCAGAAAACTAAATCACCCAAGGCTGCCCTATCACCAGCAAGGCTTGGA
AGTCCTATTCGGTCACCAAAAACCATCCCCAAAGAGAAGAAATCACCTGGACGTTCTAAGAGCCCCAAGAGTCCTAAGAGCCCCAAGATTGTAACCCATGTTCCCCAACCCCCTGTCAGACCTGAAAC
ACCAAATAGGACCCCTTCAGCTATGGTGGTTGAAAAAACTGTTAAGGAGACTATCCCAGTGAAACCAACACAGACGCCCCCGGAAACTGGGAAACTGAACATTGAAATGCAGCTGAAAAAAGGTGTTG
TGACAGACAAAACCATCGATGACTCCATCGATGCTGTGATTGCACGAGCCTGTGCAGAGCGGGAGCCAGACCCTTTCGAGTTTTCTTCTGGATCAGAATCCGAAGGAGACACTTTTACGAGTCCTAAG
AGGATTTCAGTGTCAGAGTGCACCACTCCGAAAGCTTCCACTTCCTCCAATAACTTTACTAAGTCCCTCGCTACTCCTCTGCCTCTCTCTGGTGGAACCTCCAGTTCGGATAACTCGTGGACAATGGA
TGCCTCTATTGATGAGGTGGTACGGAAGGCAAAGCTGGGAGCCCCTTCCAACATGCCTCCCACCTTCCCCTATATCTCGTCTCCCTCCATTTCTCCTCCCACTCCTGAACCTCTGCACAAGGGGTATG
AGGAGAAAGCCAAGCCGCCACCTTCCGTGGATGTGAAGAAGAAGTTGAAAAAAGAACTGAAGACTAAGTTGAAAAAGAAAGAAAAGCAGCGAGACAGAGAGAGGGAGAGAGAGAGAAACAAAGAAAAA
AGCAAAGAGAAGGATAAAGTGAGAGAGAGGGAGAAGGAGAAGGAAGCTGGAAAGGAGGTTAAGTACCCATGGAAGGAGTTGATGAAAGACGAAGAGTCCGATCCCTATAAGTTTAAAATCAAAGAGTT
TGAAGACATTGATGCGAAAGTGCGATTGAAAGATGGGATCGTGAGGAGAGAGCGAGAGAAGCATAAGGACAAGAAGAAAGACCGAGAAAGAGGCAAGCGGGAGAAAGATAAGCGGGAAAGGGAAAGGC
TTAAAGAAAAAAGCAGAGAAGACAAGATAAAGGCCCCTCCAACGCAGCTGGTGTTGCCCCCAAAAGAAATGGCACTGCCTCTATTCAGCCCTGCAGCAGTGAGGGTCCCGGCCATGCTGCCGGCCTTC
TCGCCAATGCTCCCGGAAAAACTGTTTGAGGAAAAAGAGAAGCCCAAGGAGAAAGAAAGGAAAAAGGACAAAAAGGAGAAGAAGAAGAAGAAAGAGAAGGAGAAGGAAAAGGAGAAGAAAGAGAAGGA
GAAGGAAAAGGAGAAAAGGGAGCGAGAGAAGAGAGAGAAAGAAAAGGAGAGACACAAGCATGAAAAAATAAAAGTGGAGCCCGTCATCCCAGCCCCAAGTCCAGTTATCCCCAGGTTGACTCTTCGAG
TTGGCGCTGGCCAGGACAAGATTGTCATCAGCAAGGTGGTGCCAGCCCCGGAGGCTAAGCCCGCTCCTTCTCTGAACAGACCTAAAACCCCGCCTCCGGCCCCTGTCCCTATTCCTGTACGAGTGAGC
CCTACTCCATTGCCGCCACCACTCCTCGCCCAGGCTGCGGTGTGCCCTGCCCTGATGCCATCCCCAGCCCCTGCCCTCTCTGCAGCAGGGAGCGCCAAAGCCCCAGTGCGGAGCGTCGTGACCGAGAC
AGTCAGCACTTACGTGATCCGTGATGAGTGGGGCAATCAGATCTGGATCTGTCCAGGTTGCAACAAGCCAGATGACGGCAGCCCAATGATTGGCTGTGACGACTGTGACGATTGGTACCACTGGCCCT
GTGTGGGAATCATGGCTGCTCCTCCGGAAGAAATGCAGTGGTTCTGCCCCAAGTGTGCCAACAAGATAAAGAAAGACAAGAAGCACAAGAGGAGGAAGCACCGGGCACACTGACGTCTGCGTGGGCGG
GACTGCTGCCCCGCACCGGGCCGGGCCGGGGCTGGCCCAGTTCTGCCATCCGTCTCCCCCAGGCCCTGTGGACAGCGCATCCCCAGGAGCAAGGACAAGAACATGCCATTGCTCTGGACGCTCCCTTC
TGAAACACACGGGCCTGAGCTCCCACAGCATGTTGCTGAAGAGAAACTCCAGTAGAGGCCTGGCCTGAGGGCTGGCACCTCCATCTGCCTATTACCAGTGACAAGTATTAATAAAGACACCACACATC
TTCCCTCTTGACTTCCTTCTTCTCTCAGAACCTTTATTCCGGTGTTAGGTAAGACGTCTGTACAAACGCCCAGACTGACTGGAGGATGCGTCAGTCGCTCTACAGTTTGCAAGCCGCTCCCTCCCTCC
ACAGCGAGGTGACCCGCAGGAGAGAGCGCTCCAGTCAGAGGACTGGTAAATATTTTTGTGATGAGAGTATATGAAGCCCCCCACCTCACCCAACTTTTATTACTAGCGTGTAAAATGTTCAGGCTTTT
GTGAGATACCTTATATTTTTTAAGAAAAGGGTTTCTATCATGTCCTGTCCACCTCTGCAAATTCTTTTCATTTAGCGTATTTTATAACTTGGATTCTTATTCTACTGTGTGAGCTGCTGGAGTCCCTC
TCGCTGCGTGTGCATCCCATCAACTTGTATAAAACTCTTGATACTGAGAAAAATCCCCCACTGTAAATAATAAATATTTATGAAGTAGTTATTTTTAAAATTTTTTTATCGTGTTTAATTCTGGCTTT
CTCTGGAATCCACTGTGATTTCAGCCATGTCTGTAATTGCTGCTGTACATAGGCAAAGAGAGAGAAGGGCCCAGACCATGTCCCTCCCTAGACACCCTGCCCACATGGCGGGCAGAGGACCCTAGCAA
TTGGAAGGAAACAAGGCAATTGACACCTCGAGTCAATGGCTTGAAATCGTTTTGTTTGTTACATATTTCCTGTAAATTTCTCTCACTTTTACTAAAAGGACATGTAGTTTCCACAAAAGTAAAAAAAG
AAAAAATACTGTAGCATTTTGTGTTTATATTGTTTTATTTCTACAGATTTGTTCATGGATATTGTGCTTTAAGGTTGAAATGAAGTATATTATGGATTTTTTTAAGAAAACTCATCAAATTTCAGGGT
ATCACAAAACTTTATTATATTGCTATACTGCCCACTATTTATTATATGTTATAGATATCTGAAACATAAACCAAATGTTTTATTTTTAATGTAAAAAAAAGCATCAAATTTAACTTTATTAGCATATT
TTAGTGGCTTTGAAATAACTATGGACCTTTACTTGATTTTGAAATAATCCCAATCTGGGCATGTGTGAAGGCGATCTTGAATGTTAGAACTCGGAATTTGAACCTAATACAAATATATGAGTAGAAAT
GTGATTTTTTTTTTACTGCCAACTCAATTGACATTAGTATTATAGTCACTCCTATTTTAAAACATATAATGTGGTTTCAGAAATGTGGTTCTCTGCCTTGATGTTAAATTGCAGAACAGTGGTAACGG
AGTCAACCTGCGAAGAGTGTGGAAGTCACTCCCCTCCTTGTTCTAGAAGCCAGAAGTTTTCGTCACCCCTGCCCCCCAAAAAGTATCTATGTCGAGATATGTGTCTCTTTTCTTTTTCATTCACTAGA
GATCATTCTAAATACTTTATACAATATTTTCACATGCACAAAGAATACCCATTAGTGCTTTTTGGAGAAGACGAAGGATGGGGGAAGTACAAAATAAAGATTATTGGCTGTTTCGTA

hide sequence

RefSeq Acc Id:

XM_006254228 ⟹ XP_006254290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	73,365,298 - 73,518,053 (+)	NCBI
mRatBN7.2	17	68,455,389 - 68,608,367 (+)	NCBI
Rnor_6.0	17	72,240,785 - 72,393,447 (+)	NCBI
Rnor_5.0	17	73,926,501 - 74,078,577 (+)	NCBI

Sequence:

show sequence

GAGGCGGAGCGAGTCCAAAATGGCGGCTCTCAGGCTGGCGCGCTCCGTGCTGCTGAGGCTTTGAGGTGGTCGCTCGGGGCCGGAGGGGGACGATTTCCCCGCCGCGGGGCCCCCAGAGAATGAATCGG
GGGCTCTGCTGAAGCGAGACGGCAGGGCTGGAGAGCAGTGGCAGCAAAGGGCTGCGGTGGCGTCCACGCAGCGGGATGTGCGAGAGTTACTCCAGGTCGTTGTTGAGGGTCTCGGTGGCGCAGATCTG
CCAGGCGCTGGGCTGGGACTCGGTGCAGCTCAGTGCCTGCCACCTCCTCACCGACGTCCTGCAGCGTTATCTGCAGCAGCTGGGCCGGGGCTGCCATCGGTACTCTGAACTCTATGGCCGAACAGATC
CCATTTTGGATGACGTTGGTGAAGCCTTCCAACTTATGGGGGTTAATCTGCACGAACTAGAAGACTATATTCATAATATTGAACCTGTCACTTTCCCACATCAAATTCCTTCTTTTCCTGTTAGCAAG
AACAGTGTCCTTCAGTTTCCTCAGCCAGGAAGTAAAGATGCAGAGGAAAGAAAAGACTACATTCCGGATTACCTGCCCCCCATCGTGTCTTCTCAAGAAGAGGAGGAAGAGGAACAGGTGCCCACTGA
TGGGGGCACCTCAGCAGAAGCCATGCAGGTGCCCTTGGAAGAAGATGATGAATTGGAGGAGGAGGAAGTCATCAATGATGAGAACTTCTTGGGTAAGAGGCCACTGGACAGTCCTGAAGTGGAAGAAA
TGCCCTCCATGAAGCGCCCACGACTCCTGAACTCTAAAGGGGACTCCCTAGATGTTGTGTTGTTAGAAGCACGAGAACCTCTCAGCTCAATAAATCCACAGAAGATCCCACCAATGCTTTCTCCTGTG
CATGTCCAGGACAGTACGGATCTGGCCCCTCCATCACCAGAGCCCCCCATGCTGGCTCCATTTGCAAAGTCACAACTACCAATTGCAAAGCCATTAGAAACAAAACCATTTACACCGAAAACAAAGAC
TAAAGCTAGCTCTCCCGGTCAGAAAACTAAATCACCCAAGGCTGCCCTATCACCAGCAAGGCTTGGAAGTCCTATTCGGTCACCAAAAACCATCCCCAAAGAGAAGAAATCACCTGGACGTTCTAAGA
GCCCCAAGAGTCCTAAGAGCCCCAAGATTGTAACCCATGTTCCCCAACCCCCTGTCAGACCTGAAACACCAAATAGGACCCCTTCAGCTATGGTGGTTGAAAAAACTGTTAAGGAGACTATCCCAGTG
AAACCAACACAGACGCCCCCGGAAACTGGGAAACTGAACATTGAAATGCAGCTGAAAAAAGGTGTTGTGACAGACAAAACCATCGATGACTCCATCGATGCTGTGATTGCACGAGCCTGTGCAGAGCG
GGAGCCAGACCCTTTCGAGTTTTCTTCTGGATCAGAATCCGAAGGAGACACTTTTACGAGTCCTAAGAGGATTTCAGTGTCAGAGTGCACCACTCCGAAAGCTTCCACTTCCTCCAATAACTTTACTA
AGTCCCTCGCTACTCCTCTGCCTCTCTCTGGTGGAACCTCCAGTTCGGATAACTCGTGGACAATGGATGCCTCTATTGATGAGGTGGTACGGAAGGCAAAGCTGGGAGCCCCTTCCAACATGCCTCCC
ACCTTCCCCTATATCTCGTCTCCCTCCATTTCTCCTCCCACTCCTGAACCTCTGCACAAGGGGTATGAGGAGAAAGCCAAGCCGCCACCTTCCGTGGATGTGAAGAAGAAGTTGAAAAAAGAACTGAA
GACTAAGTTGAAAAAGAAAGAAAAGCAGCGAGACAGAGAGAGGGAGAGAGAGAGAAACAAAGAAAAAAGCAAAGAGAAGGATAAAGTGAGAGAGAGGGAGAAGGAGAAGGAAGCTGGAAAGGAGGTTA
AGTACCCATGGAAGGAGTTGATGAAAGACGAAGAGTCCGATCCCTATAAGTTTAAAATCAAAGAGTTTGAAGACATTGATGCGAAAGTGCGATTGAAAGATGGGATCGTGAGGAGAGAGCGAGAGAAG
CATAAGGACAAGAAGAAAGACCGAGAAAGAGGCAAGCGGGAGAAAGATAAGCGGGAAAGGGAAAGGCTTAAAGAAAAAAGCAGAGAAGACAAGATAAAGGCCCCTCCAACGCAGCTGGTGTTGCCCCC
AAAAGAAATGGCACTGCCTCTATTCAGCCCTGCAGCAGTGAGGGTCCCGGCCATGCTGCCGGCCTTCTCGCCAATGCTCCCGGAAAAACTGTTTGAGGAAAAAGAGAAGCCCAAGGAGAAAGAAAGGA
AAAAGGACAAAAAGGAGAAGAAGAAGAAGAAAGAGAAGGAGAAGGAAAAGGAGAAGAAAGAGAAGGAGAAGGAAAAGGAGAAAAGGGAGCGAGAGAAGAGAGAGAAAGAAAAGGAGAGACACAAGCAT
GAAAAAATAAAAGTGGAGCCCGTCATCCCAGCCCCAAGTCCAGTTATCCCCAGGTTGACTCTTCGAGTTGGCGCTGGCCAGGACAAGATTGTCATCAGCAAGGTGGTGCCAGCCCCGGAGGCTAAGCC
CGCTCCTTCTCTGAACAGACCTAAAACCCCGCCTCCGGCCCCTGTCCCTATTCCTGTACGAGTGAGCCCTACTCCATTGCCGCCACCACTCCTCGCCCAGGCTGCGGTGTGCCCTGCCCTGATGCCAT
CCCCAGCCCCTGCCCTCTCTGCAGCAGGGAGCGCCAAAGCCCCAGTGCGGAGCGTCGTGACCGAGACAGTCAGCACTTACGTGATCCGTGATGAGTGGGGCAATCAGATCTGGATCTGTCCAGGTTGC
AACAAGCCAGATGACGGCAGCCCAATGATTGGCTGTGACGACTGTGACGATTGGTACCACTGGCCCTGTGTGGGAATCATGGCTGCTCCTCCGGAAGAAATGCAGTGGTTCTGCCCCAAGTGTGCCAA
CAAGATAAAGAAAGACAAGAAGCACAAGAGGAGGAAGCACCGGGCACACTGACGTCTGCGTGGGCGGGACTGCTGCCCCGCACCGGGCGCACTGACCGGGCGCACTGACGTCTGCGTGGGCGCACTGA
CCGGGCGCACTGACGTCTGCGTGGGCGGGACTGCTGCCCCGCAGCGGGCCGGGGCTGGCCCAGTTCTGCCATCCGTCTCCCCCAGGCCCTGTGGACAGCGCATCCCCAGGAGCAAGGACAAGAACATG
CCATTGCTCTGGACGCTCCCTTCTGAAACACACGGGCCTGAGCTCCCACAGCATGTTGCTGAAGAGAAACTCCAGTAGAGGCCTGGCCTGAGGGCTGGCACCTCCATCTGCCTATTACCAGTGACAAG
TATTAATAAAGACACCACACATCTTCCCTCTTGACTTCCTTCTTCTCTCAGAACCTTTATTCCGGTGTTAGGTAAGACGTCTGTACAAACGCCCAGACTGACTGGAGGATGCGTCAGTCGCTCTACAG
TTTGCAAGCCGCTCCCTCCCTCCACAGCGAGGTGACCCGCAGGAGAGAGCGCTCCAGTCAGAGGACTGGTAAATATTTTTGTGATGAGAGTATATGAAGCCCCCCACCTCACCCAACTTTTATTACTA
GCGTGTAAAATGTTCAGGCTTTTGTGAGATACCTTATATTTTTTAAGAAAAGGGTTTCTATCATGTCCTGTCCACCTCTGCAAATTCTTTTCATTTAGCGTATTTTATAACTTGGATTCTTATTCTAC
TGTGTGAGCTGCTGGAGTCCCTCTCGCTGCGTGTGCATCCCATCAACTTGTATAAAACTCTTGATACTGAGAAAAATCCCCCACTGTAAATAATAAATATTTATGAAGTAGTTATTTTTAAAATTTTT
TTATCGTGTTTAATTCTGGCTTTCTCTGGAATCCACTGTGATTTCAGCCATGTCTGTAATTGCTGCTGTACATAGGCAAAGAGAGAGAAGGGCCCAGACCATGTCCCTCCCTAGACACCCTGCCCACA
TGGCGGGCAGAGGACCCTAGCAATTGGAAGGAAACAAGGCAATTGACACCTCGAGTCAATGGCTTGAAATCGTTTTGTTTGTTACATATTTCCTGTAAATTTCTCTCACTTTTACTAAAAGGACATGT
AGTTTCCACAAAAGTAAAAAAAGAAAAAATACTGTAGCATTTTGTGTTTATATTGTTTTATTTCTACAGATTTGTTCATGGATATTGTGCTTTAAGGTTGAAATGAAGTATATTATGGATTTTTTTAA
GAAAACTCATCAAATTTCAGGGTATCACAAAACTTTATTATATTGCTATACTGCCCACTATTTATTATATGTTATAGATATCTGAAACATAAACCAAATGTTTTATTTTTAATGTAAAAAAAAGCATC
AAATTTAACTTTATTAGCATATTTTAGTGGCTTTGAAATAACTATGGACCTTTACTTGATTTTGAAATAATCCCAATCTGGGCATGTGTGAAGGCGATCTTGAATGTTAGAACTCGGAATTTGAACCT
AATACAAATATATGAGTAGAAATGTGATTTTTTTTTTACTGCCAACTCAATTGACATTAGTATTATAGTCACTCCTATTTTAAAACATATAATGTGGTTTCAGAAATGTGGTTCTCTGCCTTGATGTT
AAATTGCAGAACAGTGGTAACGGAGTCAACCTGCGAAGAGTGTGGAAGTCACTCCCCTCCTTGTTCTAGAAGCCAGAAGTTTTCGTCACCCCTGCCCCCCAAAAAGTATCTATGTCGAGATATGTGTC
TCTTTTCTTTTTCATTCACTAGAGATCATTCTAAATACTTTATACAATATTTTCACATGCACAAAGAATACCCATTAGTGCTTTTTGGAGAAGACGAAGGATGGGGGAAGTACAAAATAAAGATTATT
GGCTGTTTCGT

hide sequence


Protein RefSeqs	NP_001258271	(Get FASTA)	NCBI Sequence Viewer
	XP_006254290	(Get FASTA)	NCBI Sequence Viewer
	XP_225559	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78626	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049879.1
	ENSRNOP00000068697.1
	ENSRNOP00000090262.1

RefSeq Acc Id:

NP_001258271 ⟸ NM_001271342

- UniProtKB:

D3ZPB7 (UniProtKB/TrEMBL), A6JLU9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILDDVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQFPQPGSKDAEERKDYIPDYL
PPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEVINDENFLGKRPLDSPEVEEMPSMKRPRLLNSKGDSLDVVLLEAREPLSSINPQKIPPMLSPVHVQDSTDLAPPSPEPPMLAPFAKSQ
LPIAKPLETKPFTPKTKTKASSPGQKTKSPKAALSPARLGSPIRSPKTIPKEKKSPGRSKSPKSPKSPKIVTHVPQPPVRPETPNRTPSAMVVEKTVKETIPVKPTQTPPETGKLNIEMQLKKGVVTD
KTIDDSIDAVIARACAEREPDPFEFSSGSESEGDTFTSPKRISVSECTTPKASTSSNNFTKSLATPLPLSGGTSSSDNSWTMDASIDEVVRKAKLGAPSNMPPTFPYISSPSISPPTPEPLHKGYEEK
AKPPPSVDVKKKLKKELKTKLKKKEKQRDRERERERNKEKSKEKDKVREREKEKEAGKEVKYPWKELMKDEESDPYKFKIKEFEDIDAKVRLKDGIVRREREKHKDKKKDRERGKREKDKRERERLKE
KSREDKIKAPPTQLVLPPKEMALPLFSPAAVRVPAMLPAFSPMLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKEKEKKEKEKEKEKREREKREKEKERHKHEKIKVEPVIPAPSPVIPRLTLRVGA
GQDKIVISKVVPAPEAKPAPSLNRPKTPPPAPVPIPVRVSPTPLPPPLLAQAAVCPALMPSPAPALSAAGSAKAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG
IMAAPPEEMQWFCPKCANKIKKDKKHKRRKHRAH

hide sequence

RefSeq Acc Id:	XP_006254290 ⟸ XM_006254228
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPB7 (UniProtKB/TrEMBL), A6JLU9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQFPQPGSKDAEERKDYIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEEDDELEEEEVINDENFLGKRPLDSPEVEEMPSM KRPRLLNSKGDSLDVVLLEAREPLSSINPQKIPPMLSPVHVQDSTDLAPPSPEPPMLAPFAKSQLPIAKPLETKPFTPKTKTKASSPGQKTKSPKAALSPARLGSPIRSPKTIPKEKKSPGRSKSPKS PKSPKIVTHVPQPPVRPETPNRTPSAMVVEKTVKETIPVKPTQTPPETGKLNIEMQLKKGVVTDKTIDDSIDAVIARACAEREPDPFEFSSGSESEGDTFTSPKRISVSECTTPKASTSSNNFTKSLA TPLPLSGGTSSSDNSWTMDASIDEVVRKAKLGAPSNMPPTFPYISSPSISPPTPEPLHKGYEEKAKPPPSVDVKKKLKKELKTKLKKKEKQRDRERERERNKEKSKEKDKVREREKEKEAGKEVKYPW KELMKDEESDPYKFKIKEFEDIDAKVRLKDGIVRREREKHKDKKKDRERGKREKDKRERERLKEKSREDKIKAPPTQLVLPPKEMALPLFSPAAVRVPAMLPAFSPMLPEKLFEEKEKPKEKERKKDK KEKKKKKEKEKEKEKKEKEKEKEKREREKREKEKERHKHEKIKVEPVIPAPSPVIPRLTLRVGAGQDKIVISKVVPAPEAKPAPSLNRPKTPPPAPVPIPVRVSPTPLPPPLLAQAAVCPALMPSPAP ALSAAGSAKAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDKKHKRRKHRAH hide sequence

Protein Domains

Bromodomain associated PHD-type

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-8750	BioCyc
Ensembl Genes	ENSRNOG00000019223	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041346.5	UniProtKB/TrEMBL
	ENSRNOT00000090453.2	UniProtKB/TrEMBL
	ENSRNOT00000104116.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	3.40.1380.10	UniProtKB/TrEMBL
	ATP synthase, gamma subunit, helix hairpin domain	UniProtKB/TrEMBL
InterPro	ATP_synth_F1_ATPase_gsu	UniProtKB/TrEMBL
	ATPase_F1-cplx_gsu	UniProtKB/TrEMBL
	ATPase_F1_gsu_CS	UniProtKB/TrEMBL
	BTP	UniProtKB/TrEMBL
	Histone-fold	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:100360100	UniProtKB/TrEMBL
NCBI Gene	100360100	ENTREZGENE
PANTHER	ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR11693	UniProtKB/TrEMBL
	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	UniProtKB/TrEMBL
	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	UniProtKB/TrEMBL
Pfam	ATP-synt	UniProtKB/TrEMBL
	Bromo_TP	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
PhenoGen	Taf3	PhenoGen
PIRSF	ATP_synthase_gamma	UniProtKB/TrEMBL
PRINTS	ATPASEGAMMA	UniProtKB/TrEMBL
PROSITE	ATPASE_GAMMA	UniProtKB/TrEMBL
	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019223	RatGTEx
SMART	BTP	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	ATPase_gamma	UniProtKB/TrEMBL
	FYVE_PHD_ZnF	UniProtKB/TrEMBL
UniProt	A0A8I6GIR3_RAT	UniProtKB/TrEMBL
	A6JLU9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZPB7	ENTREZGENE, UniProtKB/TrEMBL
	Q6QI09_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Taf3	TATA-box binding protein associated factor 3	Taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-08-03	LOC100360100	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Data merged from RGD:1311851	737654	APPROVED
2012-08-03	Taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa	LOC100360100	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100360100	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Taf3_predicted	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Taf3_predicted	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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