Phldb2 (pleckstrin homology-like domain, family B, member 2) - Rat Genome Database

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Gene: Phldb2 (pleckstrin homology-like domain, family B, member 2) Rattus norvegicus
Analyze
Symbol: Phldb2
Name: pleckstrin homology-like domain, family B, member 2
RGD ID: 1591402
Description: Predicted to be involved in several processes, including negative regulation of focal adhesion assembly; regulation of cytoskeleton organization; and regulation of embryonic development. Predicted to be located in several cellular components, including cell leading edge; cytoskeleton; and focal adhesion. Predicted to be active in basal cortex. Orthologous to human PHLDB2 (pleckstrin homology like domain family B member 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685611; NEWGENE_1591402; pleckstrin homology like domain family B member 2; pleckstrin homology-like domain family B member 2; similar to pleckstrin homology-like domain, family B, member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,321,738 - 68,540,724 (+)NCBIGRCr8
mRatBN7.21154,859,173 - 55,078,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,859,135 - 55,078,467 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01160,042,879 - 60,051,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,265,732 - 57,481,589 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,429,481 - 60,646,262 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,484,223 - 56,564,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1154,388,307 - 54,601,451 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Phldb2Ratatrial fibrillation  ISORGD:135067611554173CTD Direct Evidence: marker/mechanismCTDPMID:29892015

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Phldb2Rat1,2-dimethylhydrazine multiple interactionsISORGD:15582496480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of PHLDB2 mRNACTDPMID:22206623
Phldb2Rat1,2-dimethylhydrazine increases expressionISORGD:155824964804641,2-Dimethylhydrazine results in increased expression of PHLDB2 mRNACTDPMID:22206623
Phldb2Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PHLDB2 mRNACTDPMID:32145629
Phldb2Rat17beta-estradiol affects expressionISORGD:15582496480464Estradiol affects the expression of PHLDB2 mRNACTDPMID:39298647
Phldb2Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISORGD:13506766480464Dihydrotestosterone results in increased expression of PHLDB2 mRNACTDPMID:29581250
Phldb2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15582496480464Tetrachlorodibenzodioxin results in decreased expression of PHLDB2 mRNACTDPMID:19770486|PMID:33956508
Phldb2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PHLDB2 mRNACTDPMID:32109520|PMID:33387578
Phldb2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:15582496480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression more ...CTDPMID:25975270
Phldb2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13506766480464Tetrachlorodibenzodioxin results in increased expression of PHLDB2 mRNACTDPMID:20106945|PMID:21632981
Phldb2Rat2,6-dimethoxyphenol multiple interactionsISORGD:13506766480464[Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in increased expression of and affects the more ...CTDPMID:38598786
Phldb2Rat2-hydroxypropanoic acid increases expressionISORGD:13506766480464Lactic Acid results in increased expression of PHLDB2 mRNACTDPMID:30851411
Phldb2Rat3,4-methylenedioxymethamphetamine decreases expressionISORGD:15582496480464N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of PHLDB2 mRNACTDPMID:26251327
Phldb2Rat4,4'-sulfonyldiphenol increases expressionISORGD:15582496480464bisphenol S results in increased expression of PHLDB2 mRNACTDPMID:30951980
Phldb2Rat4,4'-sulfonyldiphenol decreases methylationISORGD:13506766480464bisphenol S results in decreased methylation of PHLDB2 geneCTDPMID:31601247
Phldb2Rat4,4'-sulfonyldiphenol affects expressionISORGD:15582496480464bisphenol S affects the expression of PHLDB2 mRNACTDPMID:39298647
Phldb2Rat4-hydroxyphenyl retinamide increases expressionISORGD:15582496480464Fenretinide results in increased expression of PHLDB2 mRNACTDPMID:28973697
Phldb2Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of PHLDB2 mRNACTDPMID:24780913|PMID:25825206
Phldb2Rataflatoxin B1 increases expressionISORGD:15582496480464Aflatoxin B1 results in increased expression of PHLDB2 mRNACTDPMID:19770486
Phldb2Rataflatoxin B1 decreases methylationISORGD:13506766480464Aflatoxin B1 results in decreased methylation of PHLDB2 geneCTDPMID:27153756
Phldb2Ratantirheumatic drug increases expressionISORGD:13506766480464Antirheumatic Agents results in increased expression of PHLDB2 mRNACTDPMID:24449571

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Biological Process
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Phldb2Ratbasement membrane organization involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratbasement membrane organization involved_inISORGD:13506761624291UniProtKB:Q7Z460|UniProtKB:Q86UU1 PMID:23940118RGDPMID:23940118
Phldb2Ratcell migration involved_inISORGD:15582491624291MGI:1916034 PMID:27378169RGDPMID:27378169
Phldb2Ratcell migration involved_inIEAUniProtKB:Q8K1N2|ensembl:ENSMUSP000000464961600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratestablishment of cell polarity involved_inISORGD:15582491624291MGI:1916034 PMID:27378169RGDPMID:27378169
Phldb2Ratestablishment of cell polarity involved_inIEAUniProtKB:Q8K1N2|ensembl:ENSMUSP000000464961600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratestablishment of protein localization involved_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratestablishment of protein localization involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratmicrotubule cytoskeleton organization involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratmicrotubule cytoskeleton organization involved_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratnegative regulation of focal adhesion assembly involved_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratnegative regulation of focal adhesion assembly involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratnegative regulation of stress fiber assembly involved_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratnegative regulation of stress fiber assembly involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratnegative regulation of wound healing, spreading of epidermal cells involved_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratnegative regulation of wound healing, spreading of epidermal cells involved_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratregulation of microtubule cytoskeleton organization involved_inIBAPANTHER:PTN002638043|UniProtKB:Q86SQ01600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Phldb2Ratbasal cortex located_inISORGD:13506761624291 PMID:23940118RGDPMID:23940118
Phldb2Ratbasal cortex located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratbasal cortex is_active_inIBAPANTHER:PTN002638043|UniProtKB:Q86SQ01600115GO_REF:0000033GO_CentralGO_REF:0000033
Phldb2Ratcell cortex located_inISORGD:13506761624291 PMID:24120883RGDPMID:24120883
Phldb2Ratcell cortex located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratcell leading edge located_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratcell leading edge located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratcytosol located_inISORGD:1350676|UniProtKB:Q86SQ0-1|UniProtKB:Q86SQ0-2|UniProtKB:Q86SQ0-31624291 RGDGO_REF:0000052
Phldb2Ratcytosol located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratfocal adhesion located_inISORGD:13506761624291 PMID:24859005RGDPMID:24859005
Phldb2Ratfocal adhesion located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratintermediate filament cytoskeleton located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratintermediate filament cytoskeleton located_inISORGD:1350676|UniProtKB:Q86SQ0-1|UniProtKB:Q86SQ0-2|UniProtKB:Q86SQ0-31624291 RGDGO_REF:0000052
Phldb2Ratplasma membrane located_inISORGD:1350676|UniProtKB:Q86SQ0-1|UniProtKB:Q86SQ0-2|UniProtKB:Q86SQ0-31624291 RGDGO_REF:0000052
Phldb2Ratplasma membrane located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
Phldb2Ratpodosome located_inISORGD:13506761624291 PMID:23525008RGDPMID:23525008
Phldb2Ratpodosome located_inIEAUniProtKB:Q86SQ0|ensembl:ENSP000004054051600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Phldb2Ratprotein binding enablesISORGD:13506761624291UniProtKB:P21333|UniProtKB:Q9Y2J4 PMID:20236936, PMID:23525008, PMID:26496610RGDPMID:20236936|PMID:23525008|PMID:26496610
Phldb2Ratprotein binding enablesISORGD:15582491624291UniProtKB:Q3U5C7 PMID:27378169RGDPMID:27378169


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:23940118   PMID:24859005   PMID:25468996  



Phldb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,321,738 - 68,540,724 (+)NCBIGRCr8
mRatBN7.21154,859,173 - 55,078,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,859,135 - 55,078,467 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01160,042,879 - 60,051,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,265,732 - 57,481,589 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,429,481 - 60,646,262 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,484,223 - 56,564,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1154,388,307 - 54,601,451 (+)NCBICelera
Cytogenetic Map11q21NCBI
PHLDB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383111,732,496 - 111,976,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3111,732,497 - 111,976,517 (+)EnsemblGRCh38hg38GRCh38
GRCh373111,451,343 - 111,695,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,085,500 - 113,177,826 (+)NCBINCBI36Build 36hg18NCBI36
Build 343113,085,499 - 113,177,809NCBI
Celera3109,851,286 - 110,094,444 (+)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3108,826,722 - 109,070,708 (+)NCBIHuRef
CHM1_13111,415,675 - 111,659,409 (+)NCBICHM1_1
T2T-CHM13v2.03114,453,343 - 114,697,610 (+)NCBIT2T-CHM13v2.0
Phldb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391645,566,593 - 45,773,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1645,566,606 - 45,773,961 (-)EnsemblGRCm39 Ensembl
GRCm381645,746,230 - 45,953,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,746,243 - 45,953,598 (-)EnsemblGRCm38mm10GRCm38
MGSCv371645,746,346 - 45,844,491 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361645,665,575 - 45,763,715 (-)NCBIMGSCv36mm8
Celera1646,122,635 - 46,220,830 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.08NCBI
Phldb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,273,062 - 12,388,217 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542712,284,100 - 12,385,755 (+)NCBIChiLan1.0ChiLan1.0
PHLDB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22109,844,347 - 109,975,856 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13109,849,118 - 109,980,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03108,878,798 - 109,120,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13115,803,869 - 116,044,586 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3115,745,634 - 116,044,586 (+)Ensemblpanpan1.1panPan2
PHLDB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,521,087 - 16,615,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,497,202 - 16,614,132 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3316,500,237 - 16,717,632 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03316,635,502 - 16,853,682 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3316,737,741 - 16,853,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13316,446,434 - 16,663,884 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03316,492,184 - 16,707,808 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03317,037,057 - 17,254,141 (+)NCBIUU_Cfam_GSD_1.0
Phldb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,792,508 - 137,991,275 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936834592,584 - 793,386 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936834592,688 - 791,533 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHLDB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,778,370 - 147,879,794 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113147,778,420 - 148,025,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PHLDB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,821,958 - 69,059,087 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2268,821,742 - 69,059,087 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604197,417,840 - 97,653,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phldb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473136,593,871 - 36,872,200 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473136,596,812 - 36,871,963 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Phldb2
1359 total Variants

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:80
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000034097, ENSRNOT00000042754
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat

1 to 10 of 20 rows
RH143382  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21155,033,616 - 55,033,794 (+)MAPPERmRatBN7.2
Rnor_6.01157,438,982 - 57,439,159NCBIRnor6.0
Rnor_5.01160,601,717 - 60,601,894UniSTSRnor5.0
RGSC_v3.41156,521,549 - 56,521,726UniSTSRGSC3.4
Celera1154,559,131 - 54,559,308UniSTS
RH 3.4 Map11714.0UniSTS
Cytogenetic Map11q21UniSTS
RH141831  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21155,076,683 - 55,076,888 (+)MAPPERmRatBN7.2
Rnor_6.01157,481,709 - 57,481,913NCBIRnor6.0
Rnor_6.01160,049,780 - 60,049,984NCBIRnor6.0
Rnor_5.01160,644,477 - 60,644,681UniSTSRnor5.0
RGSC_v3.41156,564,101 - 56,564,305UniSTSRGSC3.4
RH 3.4 Map4622.53UniSTS
Cytogenetic Map11q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 26 of 26 rows
RefSeq Transcripts NM_001432497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 26 of 26 rows

Ensembl Acc Id: ENSRNOT00000034097   ⟹   ENSRNOP00000038800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,998,343 - 55,077,164 (+)Ensembl
Rnor_6.0 Ensembl1157,404,196 - 57,481,567 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000042754   ⟹   ENSRNOP00000049406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,981,191 - 55,077,164 (+)Ensembl
Rnor_6.0 Ensembl1157,404,196 - 57,481,567 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086178   ⟹   ENSRNOP00000077973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,981,197 - 55,078,467 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093174   ⟹   ENSRNOP00000076223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,859,135 - 55,078,464 (+)Ensembl
Rnor_6.0 Ensembl1157,265,732 - 57,405,518 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093201   ⟹   ENSRNOP00000076159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,981,197 - 55,078,467 (+)Ensembl
Rnor_6.0 Ensembl1157,430,166 - 57,481,589 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114570   ⟹   ENSRNOP00000097614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1154,981,191 - 55,078,126 (+)Ensembl
RefSeq Acc Id: XM_039088877   ⟹   XP_038944805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,173 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088878   ⟹   XP_038944806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,443,775 - 68,540,724 (+)NCBI
mRatBN7.21154,981,160 - 55,078,191 (+)NCBI
RefSeq Acc Id: XM_039088879   ⟹   XP_038944807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088880   ⟹   XP_038944808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088882   ⟹   XP_038944810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088883   ⟹   XP_038944811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088884   ⟹   XP_038944812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088885   ⟹   XP_038944813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088888   ⟹   XP_038944816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,174 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_039088889   ⟹   XP_038944817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
mRatBN7.21154,859,175 - 55,078,212 (+)NCBI
RefSeq Acc Id: XM_063270856   ⟹   XP_063126926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
RefSeq Acc Id: XM_063270857   ⟹   XP_063126927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
RefSeq Acc Id: XM_063270858   ⟹   XP_063126928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,443,466 - 68,540,724 (+)NCBI
RefSeq Acc Id: XM_063270859   ⟹   XP_063126929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
RefSeq Acc Id: XM_063270860   ⟹   XP_063126930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
RefSeq Acc Id: XM_063270861   ⟹   XP_063126931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81168,321,738 - 68,540,724 (+)NCBI
1 to 30 of 33 rows
Protein RefSeqs NP_001419426 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419427 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419428 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419429 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419430 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419431 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419432 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944810 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944812 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944816 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944817 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126926 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126927 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126928 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126929 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126930 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126931 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038800.7
  ENSRNOP00000049406.6
  ENSRNOP00000076159.2
  ENSRNOP00000076223
  ENSRNOP00000076223.2
  ENSRNOP00000077973
  ENSRNOP00000077973.1
1 to 30 of 33 rows
1 to 5 of 22 rows
1 to 5 of 22 rows
Ensembl Acc Id: ENSRNOP00000038800   ⟸   ENSRNOT00000034097
Ensembl Acc Id: ENSRNOP00000076223   ⟸   ENSRNOT00000093174
Ensembl Acc Id: ENSRNOP00000076159   ⟸   ENSRNOT00000093201
Ensembl Acc Id: ENSRNOP00000049406   ⟸   ENSRNOT00000042754
RefSeq Acc Id: XP_038944805   ⟸   XM_039088877
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y6J7 (UniProtKB/TrEMBL)
PH

Name Modeler Protein Id AA Range Protein Structure
AF-D4A779-F1-model_v2 AlphaFold D4A779 1-1304 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 32 of 32 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21391 BioCyc
Ensembl Genes ENSRNOG00000002171 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034097.8 UniProtKB/TrEMBL
  ENSRNOT00000042754.6 UniProtKB/TrEMBL
  ENSRNOT00000086178 ENTREZGENE
  ENSRNOT00000086178.2 UniProtKB/TrEMBL
  ENSRNOT00000093174 ENTREZGENE
  ENSRNOT00000093174.2 UniProtKB/TrEMBL
  ENSRNOT00000093201.2 UniProtKB/TrEMBL
  ENSRNOT00000114570 ENTREZGENE
  ENSRNOT00000114570.1 UniProtKB/TrEMBL
  ENSRNOT00000131917 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH-like_domain UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PHLDB1/2/3_PH UniProtKB/TrEMBL
NCBI Gene 685611 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY-LIKE DOMAIN FAMILY B MEMBER 2 UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY-LIKE DOMAIN, FAMILY B, MEMBER 3 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PhenoGen Phldb2 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002171 RatGTEx
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A1W2Q667 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q6E5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y6J7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GM52 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTL3 ENTREZGENE, UniProtKB/TrEMBL
  D4A779_RAT UniProtKB/TrEMBL
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Phldb2  pleckstrin homology-like domain, family B, member 2  NEWGENE_1591402  pleckstrin homology like domain family B member 2  Data merged from RGD:11480351 737654 PROVISIONAL
2016-08-02 NEWGENE_1591402  pleckstrin homology like domain family B member 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Phldb2  pleckstrin homology-like domain, family B, member 2  LOC360713  similar to pleckstrin homology-like domain, family B, member 2  Data merged from RGD:1590884 1643240 APPROVED
2008-03-05 Phldb2  pleckstrin homology-like domain, family B, member 2  LOC685611  similar to pleckstrin homology-like domain, family B, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685611  similar to pleckstrin homology-like domain, family B, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC360713  similar to pleckstrin homology-like domain, family B, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL