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Gene: Rhbdd3 (rhomboid domain containing 3) Rattus norvegicus

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Symbol:

Rhbdd3

Name:

rhomboid domain containing 3

RGD ID:

1311827

Description:

Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within several processes, including MAPK cascade; negative regulation of natural killer cell activation; and positive regulation of protein catabolic process. Predicted to be located in membrane. Orthologous to human RHBDD3 (rhomboid domain containing 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC289753; RGD1311827; rhomboid domain-containing protein 3; similar to RIKEN cDNA 5730411O18 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RHBDD3 (rhomboid domain containing 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rhbdd3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rhbdd3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RHBDD3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RHBDD3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rhbdd3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RHBDD3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RHBDD3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rhbdd3 (rhomboid domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RHBDD3 (rhomboid domain containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rhbdd3 (rhomboid domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rhbdd3 (rhomboid domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rhbdd3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	84,208,155 - 84,214,334 (+)	NCBI		GRCr8
mRatBN7.2	14	79,994,111 - 80,000,294 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,994,158 - 80,000,175 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,396,786 - 84,402,453 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,636,868 - 85,642,535 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	82,086,211 - 82,091,878 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	85,350,852 - 85,357,029 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	85,351,358 - 85,357,023 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,759,530 - 85,765,197 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	85,778,674 - 85,784,340 (+)	NCBI
Celera	14	78,884,939 - 78,890,606 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	Breast Cancer, Familial		ISO	RHBDD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial cancer of breast	ClinVar	PMID:16551709 more ...
Rhbdd3	Rat	vestibular schwannomatosis		ISO	RHBDD3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurofibromatosis and type 2	ClinVar	PMID:10220142 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	substance-related disorder		ISO	RHBDD3 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:20098672

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	1,2-dichloroethane	decreases expression	ISO	Rhbdd3 (Mus musculus)	6480464	ethylene dichloride results in decreased expression of RHBDD3 mRNA	CTD	PMID:28960355
Rhbdd3	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Rhbdd3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RHBDD3 mRNA	CTD	PMID:22206623
Rhbdd3	Rat	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of RHBDD3 mRNA	CTD	PMID:32145629
Rhbdd3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Rhbdd3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of RHBDD3 mRNA	CTD	PMID:21570461
Rhbdd3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RHBDD3 mRNA	CTD	PMID:33387578
Rhbdd3	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Rhbdd3 (Mus musculus)	6480464	bisphenol S results in decreased expression of RHBDD3 mRNA	CTD	PMID:39298647
Rhbdd3	Rat	all-trans-retinoic acid	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Tretinoin results in decreased expression of RHBDD3 mRNA	CTD	PMID:15498508
Rhbdd3	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of RHBDD3 mRNA	CTD	PMID:35163327
Rhbdd3	Rat	aristolochic acid A	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of RHBDD3 mRNA	CTD	PMID:33212167
Rhbdd3	Rat	arsane	affects methylation	ISO	RHBDD3 (Homo sapiens)	6480464	Arsenic affects the methylation of RHBDD3 gene	CTD	PMID:25304211
Rhbdd3	Rat	arsenic atom	affects methylation	ISO	RHBDD3 (Homo sapiens)	6480464	Arsenic affects the methylation of RHBDD3 gene	CTD	PMID:25304211
Rhbdd3	Rat	atrazine	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Atrazine results in decreased expression of RHBDD3 mRNA	CTD	PMID:22378314
Rhbdd3	Rat	beta-lapachone	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of RHBDD3 mRNA	CTD	PMID:38218311
Rhbdd3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RHBDD3 mRNA	CTD	PMID:25181051
Rhbdd3	Rat	chlordecone	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Chlordecone results in increased expression of RHBDD3 mRNA	CTD	PMID:29980752
Rhbdd3	Rat	chlorpyrifos	decreases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of RHBDD3 mRNA	CTD	PMID:32715474
Rhbdd3	Rat	chlorpyrifos	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of RHBDD3 mRNA	CTD	PMID:37019170
Rhbdd3	Rat	cisplatin	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Cisplatin results in decreased expression of RHBDD3 mRNA	CTD	PMID:27392435
Rhbdd3	Rat	cobalt dichloride	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	cobaltous chloride results in increased expression of RHBDD3 mRNA	CTD	PMID:19376846
Rhbdd3	Rat	cyclosporin A	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Cyclosporine results in increased expression of RHBDD3 mRNA	CTD	PMID:20106945
Rhbdd3	Rat	Dibutyl phosphate	affects expression	ISO	RHBDD3 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of RHBDD3 mRNA	CTD	PMID:37042841
Rhbdd3	Rat	dibutyl phthalate	decreases expression	EXP		6480464	Dibutyl Phthalate results in decreased expression of RHBDD3 mRNA	CTD	PMID:21266533
Rhbdd3	Rat	elemental selenium	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Selenium results in increased expression of RHBDD3 mRNA	CTD	PMID:19244175
Rhbdd3	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of RHBDD3 mRNA	CTD	PMID:29391264
Rhbdd3	Rat	folic acid	multiple interactions	ISO	Rhbdd3 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RHBDD3 mRNA	CTD	PMID:22206623
Rhbdd3	Rat	folic acid	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Folic Acid results in increased expression of RHBDD3 mRNA	CTD	PMID:25629700
Rhbdd3	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of RHBDD3 mRNA	CTD	PMID:33387578
Rhbdd3	Rat	glyphosate	increases methylation	EXP		6480464	Glyphosate results in increased methylation of RHBDD3 gene	CTD	PMID:31011160
Rhbdd3	Rat	menadione	affects expression	ISO	RHBDD3 (Homo sapiens)	6480464	Vitamin K 3 affects the expression of RHBDD3 mRNA	CTD	PMID:20044591
Rhbdd3	Rat	paracetamol	affects expression	ISO	Rhbdd3 (Mus musculus)	6480464	Acetaminophen affects the expression of RHBDD3 mRNA	CTD	PMID:17562736
Rhbdd3	Rat	pentachlorophenol	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Pentachlorophenol results in increased expression of RHBDD3 mRNA	CTD	PMID:23892564
Rhbdd3	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of RHBDD3 mRNA	CTD	PMID:35163327
Rhbdd3	Rat	pirinixic acid	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	pirinixic acid results in increased expression of RHBDD3 mRNA	CTD	PMID:18301758
Rhbdd3	Rat	quercetin	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Quercetin results in increased expression of RHBDD3 mRNA	CTD	PMID:21632981
Rhbdd3	Rat	resveratrol	multiple interactions	ISO	RHBDD3 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of RHBDD3 mRNA	CTD	PMID:23557933
Rhbdd3	Rat	selenium atom	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Selenium results in increased expression of RHBDD3 mRNA	CTD	PMID:19244175
Rhbdd3	Rat	sodium arsenite	affects methylation	ISO	RHBDD3 (Homo sapiens)	6480464	sodium arsenite affects the methylation of RHBDD3 gene	CTD	PMID:28589171
Rhbdd3	Rat	sodium arsenite	increases expression	ISO	RHBDD3 (Homo sapiens)	6480464	sodium arsenite results in increased expression of RHBDD3 mRNA	CTD	PMID:38568856
Rhbdd3	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of RHBDD3 mRNA	CTD	PMID:19281266
Rhbdd3	Rat	sunitinib	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	Sunitinib results in decreased expression of RHBDD3 mRNA	CTD	PMID:31533062
Rhbdd3	Rat	tamibarotene	decreases expression	ISO	RHBDD3 (Homo sapiens)	6480464	tamibarotene results in decreased expression of RHBDD3 mRNA	CTD	PMID:15498508
Rhbdd3	Rat	testosterone	multiple interactions	ISO	Rhbdd3 (Mus musculus)	6480464	1 more ...	CTD	PMID:33848595
Rhbdd3	Rat	testosterone	decreases expression	ISO	Rhbdd3 (Mus musculus)	6480464	Testosterone deficiency results in decreased expression of RHBDD3 mRNA	CTD	PMID:33848595
Rhbdd3	Rat	titanium dioxide	decreases methylation	ISO	Rhbdd3 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of RHBDD3 gene	CTD	PMID:35295148
Rhbdd3	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of RHBDD3 mRNA	CTD	PMID:33387578
Rhbdd3	Rat	triptonide	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	triptonide results in increased expression of RHBDD3 mRNA	CTD	PMID:33045310
Rhbdd3	Rat	trovafloxacin	increases expression	ISO	Rhbdd3 (Mus musculus)	6480464	trovafloxacin results in increased expression of RHBDD3 mRNA	CTD	PMID:35537566
Rhbdd3	Rat	trovafloxacin	decreases expression	ISO	Rhbdd3 (Mus musculus)	6480464	trovafloxacin results in decreased expression of RHBDD3 mRNA	CTD	PMID:35537566
Rhbdd3	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of RHBDD3 mRNA	CTD	PMID:20566332
Rhbdd3	Rat	vinclozolin	increases methylation	EXP		6480464	vinclozolin results in increased methylation of RHBDD3 gene	CTD	PMID:31079544

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	liver development	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	MGI:5516031 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	liver development	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	MAPK cascade	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	MAPK cascade	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	negative regulation of natural killer cell activation	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	MGI:5516031 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	negative regulation of natural killer cell activation	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	positive regulation of protein catabolic process	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	positive regulation of protein catabolic process	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	regulation of acute inflammatory response	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	MGI:5516031 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	regulation of acute inflammatory response	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	regulation of protein secretion	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rhbdd3	Rat	regulation of protein secretion	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	MGI:5516031 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	response to xenobiotic stimulus	acts_upstream_of_or_within	ISO	Rhbdd3 (Mus musculus)	1624291	MGI:5516031 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	response to xenobiotic stimulus	acts_upstream_of_or_within	IEA	UniProtKB:Q8BP97 and ensembl:ENSMUSP00000099131	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rhbdd3	Rat	membrane	located_in	IEA	InterPro:IPR022764	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rhbdd3	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rhbdd3	Rat	protein binding	enables	ISO	Rhbdd3 (Mus musculus)	1624291	PR:O54885 PMID:23610400	RGD	PMID:23610400
Rhbdd3	Rat	serine-type endopeptidase activity	enables	IBA	PANTHER:PTN002453758 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Rhbdd3	Rat	serine-type endopeptidase activity	enables	IEA	InterPro:IPR022764	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:15489334	PMID:23610400

Rhbdd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	84,208,155 - 84,214,334 (+)	NCBI		GRCr8
mRatBN7.2	14	79,994,111 - 80,000,294 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,994,158 - 80,000,175 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,396,786 - 84,402,453 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,636,868 - 85,642,535 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	82,086,211 - 82,091,878 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	85,350,852 - 85,357,029 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	85,351,358 - 85,357,023 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,759,530 - 85,765,197 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	85,778,674 - 85,784,340 (+)	NCBI
Celera	14	78,884,939 - 78,890,606 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

RHBDD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	29,259,852 - 29,268,163 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	29,259,872 - 29,268,209 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	29,655,841 - 29,664,152 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	27,985,844 - 27,993,914 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	27,980,397 - 27,988,468	NCBI
Celera	22	13,455,708 - 13,463,777 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	12,620,186 - 12,628,257 (-)	NCBI		HuRef
CHM1_1	22	29,615,142 - 29,623,212 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	29,723,344 - 29,731,654 (-)	NCBI		T2T-CHM13v2.0

Rhbdd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	5,048,282 - 5,056,100 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	5,048,926 - 5,056,093 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	5,098,282 - 5,106,100 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	5,098,926 - 5,106,093 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	4,999,441 - 5,006,094 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	4,999,441 - 5,006,094 (+)	NCBI		MGSCv36	mm8
Celera	11	5,596,534 - 5,603,187 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.26	NCBI

Rhbdd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	3,564,867 - 3,570,798 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	3,564,867 - 3,570,910 (-)	NCBI	ChiLan1.0	ChiLan1.0

RHBDD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	39,243,611 - 39,251,986 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	41,944,116 - 41,952,472 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	10,315,438 - 10,323,803 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	28,123,098 - 28,131,278 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	28,123,115 - 28,131,090 (-)	Ensembl	panpan1.1		panPan2

RHBDD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	22,573,260 - 22,578,921 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	22,573,316 - 22,577,683 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	22,445,265 - 22,451,052 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	22,947,261 - 22,953,053 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	22,947,263 - 22,952,477 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	22,656,257 - 22,662,047 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	22,920,395 - 22,926,188 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	22,984,609 - 22,990,398 (-)	NCBI		UU_Cfam_GSD_1.0

Rhbdd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,574,283 - 112,580,023 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	3,290,574 - 3,296,705 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	3,290,684 - 3,296,352 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RHBDD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	46,400,026 - 46,408,364 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	46,403,146 - 46,411,217 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	49,367,986 - 49,373,715 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RHBDD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	12,130,500 - 12,138,210 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	12,125,828 - 12,138,761 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	114,011,966 - 114,019,721 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rhbdd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	5,641,855 - 5,647,122 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	5,641,702 - 5,647,808 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rhbdd3
12 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	53
Interacting mature miRNAs:	56
Transcripts:	ENSRNOT00000031914
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	79950921	95876975	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

RH129907

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	80,000,486 - 80,000,668 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	85,357,222 - 85,357,403	NCBI	Rnor6.0
Rnor_5.0	14	86,034,840 - 86,035,021	UniSTS	Rnor5.0
RGSC_v3.4	14	85,765,394 - 85,765,575	UniSTS	RGSC3.4
Celera	14	78,890,803 - 78,890,984	UniSTS
RH 3.4 Map	14	565.6	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH137079

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	60,008,927 - 60,009,091 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	80,000,061 - 80,000,225 (-)	MAPPER	mRatBN7.2
mRatBN7.2	6	60,008,927 - 60,009,091 (-)	MAPPER	mRatBN7.2
mRatBN7.2	14	80,000,061 - 80,000,225 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	62,923,026 - 62,923,189	NCBI	Rnor6.0
Rnor_6.0	14	85,356,797 - 85,356,960	NCBI	Rnor6.0
Rnor_5.0	14	86,034,415 - 86,034,578	UniSTS	Rnor5.0
Rnor_5.0	6	72,511,874 - 72,512,037	UniSTS	Rnor5.0
RGSC_v3.4	6	62,217,609 - 62,217,772	UniSTS	RGSC3.4
RGSC_v3.4	14	85,764,969 - 85,765,132	UniSTS	RGSC3.4
Celera	14	78,890,378 - 78,890,541	UniSTS
Celera	6	59,018,734 - 59,018,897	UniSTS
Cytogenetic Map	14	q21	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001013875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031914 ⟹ ENSRNOP00000032424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	79,994,158 - 80,000,175 (+)	Ensembl
Rnor_6.0 Ensembl	14	85,351,358 - 85,357,023 (+)	Ensembl

RefSeq Acc Id:

NM_001013875 ⟹ NP_001013897

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,667 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,623 - 80,000,290 (+)	NCBI
Rnor_6.0	14	85,351,358 - 85,357,025 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI
RGSC_v3.4	14	85,759,530 - 85,765,197 (+)	RGD
Celera	14	78,884,939 - 78,890,606 (+)	RGD

Sequence:

show sequence

GAGGTCCGTCTGCTTGGGAGGGAGGCCGGGAATGCCGCGCCCGACCCCAGTAACGGTCGGAGTCCAGAAGCCCTATAATCATCCATCCTTCAACTCATACCCTTGTCTTAACAGAAAACTCAGGCCCA
AGAAATTGAGTACTTCCCCTAGAGTTACAAAGCTGAATCCGACCCAGACCCCGGGACTCCCCTCTCTGTGCTCCACCCGGAAGCTTCTCCACTGTCCTTGATTTCCCATTCTGTCCTCCTGGCTTCCC
AGTAAGATATGGTTGGAGGAGTGTTACCGGCTTGCCTATGATGTATGAGACCCTAGTTTCCATTCCTATCGCCAAGAAAGAGAAGAGACTGGTCCAGAGGACTCGAGGCCCAGTTCTGTATGTCCATG
GACCTGTCCCTTAGTGCCCAGGGATGGAATGGTTGTGAGAAGGTGCAAGAGGAAGCTTCATTTTAGGTGACCCTGCCTCCAGTACTGGGAAACAAATCCAGCTGCCTATGTATGGCTAGCATCCAGCC
TCAGGACCACCTTTGACCACCATCAACAAAGCTATGCATGCCTGGGACCCCCCTGCCTCACTGTCCCGGGCACTACCCCTCGCTTCCTCGGTCCTGATGCTGCTGCTGAGCTGCCTGTGGTTGCTGGG
GGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTGCTAACGGAACCCTGGCAGGTGCACCGGCTGCTGACCCATGCTCTGGGCCACACTGCACTGCCTGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCA
CTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCACTCTGCGCTTCCTGCACAACTCCGCCGTGCTTGCCCTGGCTACTGGGCTGCTGGCTGTGCTGCTGGCAGGCCTTGGCCTGTCCAGTGCAGCTGGA
GGCTGTGGATATATGCCTGTCCATCTAGCCATGCTGGCAGGGCAGAGTTACTACCCAGGATGGCCTCAGAGGACCCTGCCACCATGGCTGCTACCATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAG
CTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGCCTTCTTGCTGGCCTAGCCTATGCCGCTGGGGCCTTCCGGTGGCTGGAGCTCTCAGAGCGGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCA
GGACTCTGGCCGGGTGCTGGCCACTGAAACTCCTTCCCACCCCAGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTAAGGCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAAGC
TCCTGGCCTCACACTGATGGCTTTGCTCAGCTTCCACCAGGCCTGGGGCCTGGACAGCTGACCTGGAAGAACTCGGAGAGGGACTTGGACTGGGCTGGGCCCAGCTTTGCTTCAGCAACACCGATGTG
GGCAGCCCTAGATGAGCAAATGCTACAGGAAGGGATCCAGGCCTCACTTCTTGATGTGTCAGTCCAGGGTTCCCAGAACACTCTGTGGTCACCAAAGCCCTCTGTGTCTTCTCTAAGGCTTCAGCAGC
TACAGCATATGGGATTCCCCACTGAGCAGGCTGCGGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGTGTCCCTGCTGGTGGAAGGGCTAGTGGATACCGAGGCCCTAGTGACTGAGGAGAGG
AGTGGTCCAGCCCACTGCAAGGACACTGGGGTCTCATAGTCTAAGAAGAGAGTAGACCTGGCCTGAGTCCTTACCTGGTCTCCTGAGGGCTTGGTGGGGTCTTGAAAGCATCCTGGGGCAGGAGCAGG
CCCCACCATGTTCCCCTGGTACTTTGTAAGAATAAAAGCTGGTGTGCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251204 ⟹ XP_006251266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,456 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,363 - 80,000,294 (+)	NCBI
Rnor_6.0	14	85,351,078 - 85,357,029 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI

Sequence:

show sequence

GGGACCGTCTCTGAAGAGTCTGCCCTGGAGGGAGACGGAGGCTGGCGGGAGGGCTGGGGGAAGGGATCCCGGCCTGGCACAACTGCTGACTAATCGGCAGGCGGGATCACGCGCCTGTGTGTGCGCGC
AGCGGGCTCGGGGCACCTAGGTCTCGGCCTAGTGCGGGCGGCCAGGCTACCGGGCGGGCCCCCCACCTCGGTTTTCCAGGAAAACTCAGGCCCAAGAAATTGAGTACTTCCCCTAGAGTTACAAAGCT
GAATCCGACCCAGACCCCGGGACTCCCCTCTCTGTGCTCCACCCGGAAGCTTCTCCACTGTCCTTGATTTCCCATTCTGTCCTCCTGGCTTCCCAGTAAGATATGGTTGGAGGAGTGTTACCGGCTTG
CCTATGATGTATGAGACCCTAGTTTCCATTCCTATCGCCAAGAAAGAGAAGAGACTGGTCCAGAGGACTCGAGGCCCAGTTCTGTATGTCCATGGACCTGTCCCTTAGTGCCCAGGGATGGAATGGTT
GTGAGAAGGTGCAAGAGGAAGCTTCATTTTAGGTGACCCTGCCTCCAGTACTGGGAAACAAATCCAGCTGCCTATGTATGGCTAGCATCCAGCCTCAGGACCACCTTTGACCACCATCAACAAAGCTA
TGCATGCCTGGGACCCCCCTGCCTCACTGTCCCGGGCACTACCCCTCGCTTCCTCGGTCCTGATGCTGCTGCTGAGCTGCCTGTGGTTGCTGGGGGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTG
CTAACGGAACCCTGGCAGGTGCACCGGCTGCTGACCCATGCTCTGGGCCACACTGCACTGCCTGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCACTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCAC
TCTGCGCTTCCTGCACAACTCCGCCGTGCTTGCCCTGGCTACTGGGCTGCTGGCTGTGCTGCTGGCAGGCCTTGGCCTGTCCAGTGCAGCTGGAGGCTGTGGATATATGCCTGTCCATCTAGCCATGC
TGGCAGGGCAGAGTTACTACCCAGGATGGCCTCAGAGGACCCTGCCACCATGGCTGCTACCATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGC
CTTCTTGCTGGCCTAGCCTATGCCGCTGGGGCCTTCCGGTGGCTGGAGCTCTCAGAGCGGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAGGACTCTGGCCGGGTGCTGGCCACTGAAACTCCT
TCCCACCCCAGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTAAGGCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAAGCTCCTGGCCTCACACTGATGGCTTTGCTCAGCTTC
CACCAGGCCTGGGGCCTGGACAGCTGACCTGGAAGAACTCGGAGAGGGACTTGGACTGGGCTGGGCCCAGCTTTGCTTCAGCAACACCGATGTGGGCAGCCCTAGATGAGCAAATGCTACAGGAAGGG
ATCCAGGCCTCACTTCTTGATGTGTCAGTCCAGGGTTCCCAGAACACTCTGTGGTCACCAAAGCCCTCTGTGTCTTCTCTAAGGCTTCAGCAGCTACAGCATATGGGATTCCCCACTGAGCAGGCTGC
GGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGTGTCCCTGCTGGTGGAAGGGCTAGTGGATACCGAGGCCCTAGTGACTGAGGAGAGGAGTGGTCCAGCCCACTGCAAGGACACTGGGGTCT
CATAGTCTAAGAAGAGAGTAGACCTGGCCTGAGTCCTTACCTGGTCTCCTGAGGGCTTGGTGGGGTCTTGAAAGCATCCTGGGGCAGGAGCAGGCCCCACCATGTTCCCCTGGTACTTTGTAAGAATA
AAAGCTGGTGTGCTTTTCAACCTG

hide sequence

RefSeq Acc Id:

XM_006251205 ⟹ XP_006251267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,229 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,185 - 80,000,290 (+)	NCBI
Rnor_6.0	14	85,350,969 - 85,357,029 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI

Sequence:

show sequence

AAAAGGCACCTCAGGGGTCAGCGCGCTAGTGAGCGAGTGTTCCCAACAAACCCGAGGGATCCTC
TGCACGAGGCTTGGTGGCTTGGAATGAAAACTCAGGCCCAAGAAATTGAGTACTTCCCCTAGAGTTACAAAGCTGAATCCGACCCAGACCCCGGGACTCCCCTCTCTGTGCTCCACCCGGAAGCTTCT
CCACTGTCCTTGATTTCCCATTCTGTCCTCCTGGCTTCCCAGTAAGATATGGTTGGAGGAGTGTTACCGGCTTGCCTATGATGTATGAGACCCTAGTTTCCATTCCTATCGCCAAGAAAGAGAAGAGA
CTGGTCCAGAGGACTCGAGGCCCAGTTCTGTATGTCCATGGACCTGTCCCTTAGTGCCCAGGGATGGAATGGTTGTGAGAAGGTGCAAGAGGAAGCTTCATTTTAGGTGACCCTGCCTCCAGTACTGG
GAAACAAATCCAGCTGCCTATGTATGGCTAGCATCCAGCCTCAGGACCACCTTTGACCACCATCAACAAAGCTATGCATGCCTGGGACCCCCCTGCCTCACTGTCCCGGGCACTACCCCTCGCTTCCT
CGGTCCTGATGCTGCTGCTGAGCTGCCTGTGGTTGCTGGGGGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTGCTAACGGAACCCTGGCAGGTGCACCGGCTGCTGACCCATGCTCTGGGCCACACT
GCACTGCCTGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCACTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCACTCTGCGCTTCCTGCACAACTCCGCCGTGCTTGCCCTGGCTACTGGGCTGCTGGC
TGTGCTGCTGGCAGGCCTTGGCCTGTCCAGTGCAGCTGGAGGCTGTGGATATATGCCTGTCCATCTAGCCATGCTGGCAGGGCAGAGTTACTACCCAGGATGGCCTCAGAGGACCCTGCCACCATGGC
TGCTACCATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGCCTTCTTGCTGGCCTAGCCTATGCCGCTGGGGCCTTCCGGTGGCTGGAGCTCTCA
GAGCGGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAGGACTCTGGCCGGGTGCTGGCCACTGAAACTCCTTCCCACCCCAGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTAAG
GCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAAGCTCCTGGCCTCACACTGATGGCTTTGCTCAGCTTCCACCAGGCCTGGGGCCTGGACAGCTGACCTGGAAGAACTCGGAGAGGGACTTGG
ACTGGGCTGGGCCCAGCTTTGCTTCAGCAACACCGATGTGGGCAGCCCTAGATGAGCAAATGCTACAGGAAGGGATCCAGGCCTCACTTCTTGATGTGTCAGTCCAGGGTTCCCAGAACACTCTGTGG
TCACCAAAGCCCTCTGTGTCTTCTCTAAGGCTTCAGCAGCTACAGCATATGGGATTCCCCACTGAGCAGGCTGCGGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGTGTCCCTGCTGGTGGA
AGGGCTAGTGGATACCGAGGCCCTAGTGACTGAGGAGAGGAGTGGTCCAGCCCACTGCAAGGACACTGGGGTCTCATAGTCTAAGAAGAGAGTAGACCTGGCCTGAGTCCTTACCTGGTCTCCTGAGG
GCTTGGTGGGGTCTTGAAAGCATCCTGGGGCAGGAGCAGGCCCCACCATGTTCCCCTGGTACTTTGTAAGAATAAAAGCTGGTGTGCTTTTCAACCTG

hide sequence

RefSeq Acc Id:

XM_006251206 ⟹ XP_006251268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,530 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,363 - 80,000,294 (+)	NCBI
Rnor_6.0	14	85,351,313 - 85,357,029 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI

Sequence:

show sequence

CCCAGGACCTTGGACGCGTGGCCTGAGCGGGCGGGGGAGGGGAATGAGAAAACTCAGGCCCAAGAAATTGAGTACTTCCCCTAGAGTTACAAAGCTGAATCCGACCCAGACCCCGGGACTCCCCTCTC
TGTGCTCCACCCGGAAGCTTCTCCACTGTCCTTGATTTCCCATTCTGTCCTCCTGGCTTCCCAGTAAGATATGGTTGGAGGAGTGTTACCGGCTTGCCTATGATGTATGAGACCCTAGTTTCCATTCC
TATCGCCAAGAAAGAGAAGAGACTGGTCCAGAGGACTCGAGGCCCAGTTCTGTATGTCCATGGACCTGTCCCTTAGTGCCCAGGGATGGAATGGTTGTGAGAAGGTGCAAGAGGAAGCTTCATTTTAG
GTGACCCTGCCTCCAGTACTGGGAAACAAATCCAGCTGCCTATGTATGGCTAGCATCCAGCCTCAGGACCACCTTTGACCACCATCAACAAAGCTATGCATGCCTGGGACCCCCCTGCCTCACTGTCC
CGGGCACTACCCCTCGCTTCCTCGGTCCTGATGCTGCTGCTGAGCTGCCTGTGGTTGCTGGGGGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTGCTAACGGAACCCTGGCAGGTGCACCGGCTGCT
GACCCATGCTCTGGGCCACACTGCACTGCCTGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCACTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCACTCTGCGCTTCCTGCACAACTCCGCCGTGCTTG
CCCTGGCTACTGGGCTGCTGGCTGTGCTGCTGGCAGGCCTTGGCCTGTCCAGTGCAGCTGGAGGCTGTGGATATATGCCTGTCCATCTAGCCATGCTGGCAGGGCAGAGTTACTACCCAGGATGGCCT
CAGAGGACCCTGCCACCATGGCTGCTACCATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGCCTTCTTGCTGGCCTAGCCTATGCCGCTGGGGC
CTTCCGGTGGCTGGAGCTCTCAGAGCGGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAGGACTCTGGCCGGGTGCTGGCCACTGAAACTCCTTCCCACCCCAGGCAGTCTGGGTGAGCTGCCTG
TCACTTATCCTGCTGGAGTAAGGCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAAGCTCCTGGCCTCACACTGATGGCTTTGCTCAGCTTCCACCAGGCCTGGGGCCTGGACAGCTGACCTGG
AAGAACTCGGAGAGGGACTTGGACTGGGCTGGGCCCAGCTTTGCTTCAGCAACACCGATGTGGGCAGCCCTAGATGAGCAAATGCTACAGGAAGGGATCCAGGCCTCACTTCTTGATGTGTCAGTCCA
GGGTTCCCAGAACACTCTGTGGTCACCAAAGCCCTCTGTGTCTTCTCTAAGGCTTCAGCAGCTACAGCATATGGGATTCCCCACTGAGCAGGCTGCGGTGGCCTTGGCAGCTACAGGGCGTGTAGAGG
GGGCAGTGTCCCTGCTGGTGGAAGGGCTAGTGGATACCGAGGCCCTAGTGACTGAGGAGAGGAGTGGTCCAGCCCACTGCAAGGACACTGGGGTCTCATAGTCTAAGAAGAGAGTAGACCTGGCCTGA
GTCCTTACCTGGTCTCCTGAGGGCTTGGTGGGGTCTTGAAAGCATCCTGGGGCAGGAGCAGGCCCCACCATGTTCCCCTGGTACTTTGTAAGAATAAAAGCTGGTGTGCTTTTCAACCTG

hide sequence

RefSeq Acc Id:

XM_006251207 ⟹ XP_006251269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,155 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,111 - 80,000,290 (+)	NCBI
Rnor_6.0	14	85,350,852 - 85,357,029 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI

Sequence:

show sequence

CATAGGGCCAGGCCACGGGGGTGGGCGAAGAGAAACGAGCCGGCGATATCCGGCTCTTTGCTCCCGAAACCGTTGACCCAATCCTCTCCAAAGAGCCGGACGTGACGCGTGGTCTAAAAAAGGCACCT
CAGGGAAAACTCAGGCCCAAGAAATTGAGTACTTCCCCTAGAGTTACAAAGCTGAATCCGACCCAGACCCCGGGACTCCCCTCTCTGTGCTCCACCCGGAAGCTTCTCCACTGTCCTTGATTTCCCAT
TCTGTCCTCCTGGCTTCCCAGTAAGATATGGTTGGAGGAGTGTTACCGGCTTGCCTATGATGTATGAGACCCTAGTTTCCATTCCTATCGCCAAGAAAGAGAAGAGACTGGTCCAGAGGACTCGAGGC
CCAGTTCTGTATGTCCATGGACCTGTCCCTTAGTGCCCAGGGATGGAATGGTTGTGAGAAGGTGCAAGAGGAAGCTTCATTTTAGGTGACCCTGCCTCCAGTACTGGGAAACAAATCCAGCTGCCTAT
GTATGGCTAGCATCCAGCCTCAGGACCACCTTTGACCACCATCAACAAAGCTATGCATGCCTGGGACCCCCCTGCCTCACTGTCCCGGGCACTACCCCTCGCTTCCTCGGTCCTGATGCTGCTGCTGA
GCTGCCTGTGGTTGCTGGGGGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTGCTAACGGAACCCTGGCAGGTGCACCGGCTGCTGACCCATGCTCTGGGCCACACTGCACTGCCTGGCCTGCTCCTG
AGCCTGCTGCTCCTGCCCACTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCACTCTGCGCTTCCTGCACAACTCCGCCGTGCTTGCCCTGGCTACTGGGCTGCTGGCTGTGCTGCTGGCAGGCCTTGG
CCTGTCCAGTGCAGCTGGAGGCTGTGGATATATGCCTGTCCATCTAGCCATGCTGGCAGGGCAGAGTTACTACCCAGGATGGCCTCAGAGGACCCTGCCACCATGGCTGCTACCATGGCTGCTGCTGG
CCCTGACCCTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGCCTTCTTGCTGGCCTAGCCTATGCCGCTGGGGCCTTCCGGTGGCTGGAGCTCTCAGAGCGGAGACTGCAGGTGTTA
CAGGAAGGTGTCCTTTGCAGGACTCTGGCCGGGTGCTGGCCACTGAAACTCCTTCCCACCCCAGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTAAGGCCTGCCACCCCTAGACCTCC
TTACCTGGCTTCCTCAAGCTCCTGGCCTCACACTGATGGCTTTGCTCAGCTTCCACCAGGCCTGGGGCCTGGACAGCTGACCTGGAAGAACTCGGAGAGGGACTTGGACTGGGCTGGGCCCAGCTTTG
CTTCAGCAACACCGATGTGGGCAGCCCTAGATGAGCAAATGCTACAGGAAGGGATCCAGGCCTCACTTCTTGATGTGTCAGTCCAGGGTTCCCAGAACACTCTGTGGTCACCAAAGCCCTCTGTGTCT
TCTCTAAGGCTTCAGCAGCTACAGCATATGGGATTCCCCACTGAGCAGGCTGCGGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGTGTCCCTGCTGGTGGAAGGGCTAGTGGATACCGAGGC
CCTAGTGACTGAGGAGAGGAGTGGTCCAGCCCACTGCAAGGACACTGGGGTCTCATAGTCTAAGAAGAGAGTAGACCTGGCCTGAGTCCTTACCTGGTCTCCTGAGGGCTTGGTGGGGTCTTGAAAGC
ATCCTGGGGCAGGAGCAGGCCCCACCATGTTCCCCTGGTACTTTGTAAGAATAAAAGCTGGTGTGCTTTTCAACCTG

hide sequence

RefSeq Acc Id:

XM_006251208 ⟹ XP_006251270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,400 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,356 - 80,000,294 (+)	NCBI
Rnor_6.0	14	85,351,078 - 85,357,029 (+)	NCBI
Rnor_5.0	14	86,028,602 - 86,034,643 (+)	NCBI

Sequence:

show sequence

GGGACCGTCTCTGAAGAGTCTGCCCTGGAGGGAGACGGAGGCTGGCGGGAGGGCTGGGGGAAGGGATCCCGGCCTGGCACAACTGCTGACTAATCGGCAGGCGGGATCACGCGCCTGTGTGTGCGCGC
AGCGGGCTCGGGGCACCTAGAAAACTCAGGCCCAAGAAATTGAGTACTTCCCCTAGAGTTACAAAGCTGAATCCGACCCAGACCCCGGGACTCCCCTCTCTGTGCTCCACCCGGAAGCTTCTCCACTG
TCCTTGATTTCCCATTCTGTCCTCCTGGCTTCCCAGTAAGATATGGTTGGAGGAGTGTTACCGGCTTGCCTATGATGTATGAGACCCTAGTTTCCATTCCTATCGCCAAGAAAGAGAAGAGACTGGTC
CAGAGGACTCGAGGCCCAGTTCTGTATGTCCATGGACCTGTCCCTTAGTGCCCAGGGATGGAATGGTTGTGAGAAGGTGCAAGAGGAAGCTTCATTTTAGGTGACCCTGCCTCCAGTACTGGGAAACA
AATCCAGCTGCCTATGTATGGCTAGCATCCAGCCTCAGGACCACCTTTGACCACCATCAACAAAGCTATGCATGCCTGGGACCCCCCTGCCTCACTGTCCCGGGCACTACCCCTCGCTTCCTCGGTCC
TGATGCTGCTGCTGAGCTGCCTGTGGTTGCTGGGGGCTGGCCCCAGCCTCAGGTTGGCTCCAGAGCTGCTAACGGAACCCTGGCAGGTGCACCGGCTGCTGACCCATGCTCTGGGCCACACTGCACTG
CCTGGCCTGCTCCTGAGCCTGCTGCTCCTGCCCACTCTGGGCTGGTGGCAGGAGTGTCATCTGGGCACTCTGCGCTTCCTGCACAACTCCGCCGTGCTTGCCCTGGCTACTGGGCTGCTGGCTGTGCT
GCTGGCAGGCCTTGGCCTGTCCAGTGCAGCTGGAGGCTGTGGATATATGCCTGTCCATCTAGCCATGCTGGCAGGGCAGAGTTACTACCCAGGATGGCCTCAGAGGACCCTGCCACCATGGCTGCTAC
CATGGCTGCTGCTGGCCCTGACCCTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTCCTTTGTGGCCTTCTTGCTGGCCTAGCCTATGCCGCTGGGGCCTTCCGGTGGCTGGAGCTCTCAGAGCGG
AGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAGGACTCTGGCCGGGTGCTGGCCACTGAAACTCCTTCCCACCCCAGGCAGTCTGGGTGAGCTGCCTGTCACTTATCCTGCTGGAGTAAGGCCTGC
CACCCCTAGACCTCCTTACCTGGCTTCCTCAAGCTCCTGGCCTCACACTGATGGCTTTGCTCAGCTTCCACCAGGCCTGGGGCCTGGACAGCTGACCTGGAAGAACTCGGAGAGGGACTTGGACTGGG
CTGGGCCCAGCTTTGCTTCAGCAACACCGATGTGGGCAGCCCTAGATGAGCAAATGCTACAGGAAGGGATCCAGGCCTCACTTCTTGATGTGTCAGTCCAGGGTTCCCAGAACACTCTGTGGTCACCA
AAGCCCTCTGTGTCTTCTCTAAGGCTTCAGCAGCTACAGCATATGGGATTCCCCACTGAGCAGGCTGCGGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGTGTCCCTGCTGGTGGAAGGGCT
AGTGGATACCGAGGCCCTAGTGACTGAGGAGAGGAGTGGTCCAGCCCACTGCAAGGACACTGGGGTCTCATAGTCTAAGAAGAGAGTAGACCTGGCCTGAGTCCTTACCTGGTCTCCTGAGGGCTTGG
TGGGGTCTTGAAAGCATCCTGGGGCAGGAGCAGGCCCCACCATGTTCCCCTGGTACTTTGTAAGAATAAAAGCTGGTGTGCTTTTCAACCTG

hide sequence

RefSeq Acc Id:

XM_039091738 ⟹ XP_038947666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,456 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,363 - 80,000,294 (+)	NCBI

RefSeq Acc Id:

XM_039091740 ⟹ XP_038947668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,403 - 84,214,334 (+)	NCBI
mRatBN7.2	14	79,994,356 - 80,000,294 (+)	NCBI

RefSeq Acc Id:

XM_063272948 ⟹ XP_063129018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,167 - 84,214,334 (+)	NCBI

RefSeq Acc Id:

XM_063272949 ⟹ XP_063129019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	84,208,530 - 84,213,563 (+)	NCBI


Protein RefSeqs	NP_001013897	(Get FASTA)	NCBI Sequence Viewer
	XP_006251266	(Get FASTA)	NCBI Sequence Viewer
	XP_006251267	(Get FASTA)	NCBI Sequence Viewer
	XP_006251268	(Get FASTA)	NCBI Sequence Viewer
	XP_006251269	(Get FASTA)	NCBI Sequence Viewer
	XP_006251270	(Get FASTA)	NCBI Sequence Viewer
	XP_038947666	(Get FASTA)	NCBI Sequence Viewer
	XP_038947668	(Get FASTA)	NCBI Sequence Viewer
	XP_063129018	(Get FASTA)	NCBI Sequence Viewer
	XP_063129019	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81912	(Get FASTA)	NCBI Sequence Viewer
	EDM00272	(Get FASTA)	NCBI Sequence Viewer
	EDM00273	(Get FASTA)	NCBI Sequence Viewer
	EDM00274	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032424
	ENSRNOP00000032424.4
GenBank Protein	Q642B3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013897 ⟸ NM_001013875

- UniProtKB:

Q642B3 (UniProtKB/Swiss-Prot), A6IKK8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHAWDPPASLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLTEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTLRFLHNSAVLALATGLLAVLLAGLGLSSAAGGCGYMPVHLAM
LAGQSYYPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLAGLAYAAGAFRWLELSERRLQVLQEGVLCRTLAGCWPLKLLPTPGSLGELPVTYPAGVRPATPRPPYLASSSSWPHTDGFAQL
PPGLGPGQLTWKNSERDLDWAGPSFASATPMWAALDEQMLQEGIQASLLDVSVQGSQNTLWSPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEERSGPAHCKDTGV
S

hide sequence

RefSeq Acc Id:	XP_006251267 ⟸ XM_006251205
- Peptide Label:	isoform X1
- UniProtKB:	Q642B3 (UniProtKB/Swiss-Prot), A6IKK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHAWDPPASLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLTEPWQVHRLLTHALGHTALP GLLLSLLLLPTLGWWQECHLGTLRFLHNSAVLALATGLLAVLLAGLGLSSAAGGCGYMPVHLAMLAGQSYYPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLAGLAYAAGAFRWLELSERR LQVLQEGVLCRTLAGCWPLKLLPTPGSLGELPVTYPAGVRPATPRPPYLASSSSWPHTDGFAQLPPGLGPGQLTWKNSERDLDWAGPSFASATPMWAALDEQMLQEGIQASLLDVSVQGSQNTLWSPK PSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEERSGPAHCKDTGVS hide sequence

RefSeq Acc Id:	XP_006251269 ⟸ XM_006251207
- Peptide Label:	isoform X1
- UniProtKB:	Q642B3 (UniProtKB/Swiss-Prot), A6IKK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHAWDPPASLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLTEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTLRFLHNSAVLALATGLLAVLLAGLGLSSAAGGCGYMPVHLAM LAGQSYYPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLAGLAYAAGAFRWLELSERRLQVLQEGVLCRTLAGCWPLKLLPTPGSLGELPVTYPAGVRPATPRPPYLASSSSWPHTDGFAQL PPGLGPGQLTWKNSERDLDWAGPSFASATPMWAALDEQMLQEGIQASLLDVSVQGSQNTLWSPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEERSGPAHCKDTGV S hide sequence

RefSeq Acc Id:	XP_006251266 ⟸ XM_006251204
- Peptide Label:	isoform X1
- UniProtKB:	Q642B3 (UniProtKB/Swiss-Prot), A6IKK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHAWDPPASLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLTEPWQVHRLLTHALGHTALP GLLLSLLLLPTLGWWQECHLGTLRFLHNSAVLALATGLLAVLLAGLGLSSAAGGCGYMPVHLAMLAGQSYYPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLAGLAYAAGAFRWLELSERR LQVLQEGVLCRTLAGCWPLKLLPTPGSLGELPVTYPAGVRPATPRPPYLASSSSWPHTDGFAQLPPGLGPGQLTWKNSERDLDWAGPSFASATPMWAALDEQMLQEGIQASLLDVSVQGSQNTLWSPK PSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEERSGPAHCKDTGVS hide sequence

RefSeq Acc Id:	XP_006251270 ⟸ XM_006251208
- Peptide Label:	isoform X1
- UniProtKB:	Q642B3 (UniProtKB/Swiss-Prot), A6IKK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHAWDPPASLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLTEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTLRFLHNSAVLALATGLLAVLLAGLGLSSAAGGCGYMPVHLAM LAGQSYYPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLAGLAYAAGAFRWLELSERRLQVLQEGVLCRTLAGCWPLKLLPTPGSLGELPVTYPAGVRPATPRPPYLASSSSWPHTDGFAQL PPGLGPGQLTWKNSERDLDWAGPSFASATPMWAALDEQMLQEGIQASLLDVSVQGSQNTLWSPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEERSGPAHCKDTGV S hide sequence

Protein Domains

Peptidase S54 rhomboid UBA

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q642B3-F1-model_v2	AlphaFold	Q642B3	1-385	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699455

Promoter ID:

EPDNEW_R9979

Type:

initiation region

Name:

Rhbdd3_1

Description:

rhomboid domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	85,351,406 - 85,351,466	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-15148	BioCyc
Ensembl Genes	ENSRNOG00000027032	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000031914	ENTREZGENE
	ENSRNOT00000031914.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1540.10	UniProtKB/Swiss-Prot
	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7112018	IMAGE-MGC_LOAD
InterPro	Peptidase_S54_rhomboid_dom	UniProtKB/Swiss-Prot
	Rhomboid-like_sf	UniProtKB/Swiss-Prot
	UBA	UniProtKB/Swiss-Prot
	UBA-like_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:289753	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93864	IMAGE-MGC_LOAD
NCBI Gene	289753	ENTREZGENE
PANTHER	PTHR43066:SF16	UniProtKB/Swiss-Prot
	RHOMBOID-RELATED PROTEIN	UniProtKB/Swiss-Prot
Pfam	Rhomboid	UniProtKB/Swiss-Prot
	UBA	UniProtKB/Swiss-Prot
PhenoGen	Rhbdd3	PhenoGen
RatGTEx	ENSRNOG00000027032	RatGTEx
Superfamily-SCOP	SSF144091	UniProtKB/Swiss-Prot
	SSF46934	UniProtKB/Swiss-Prot
UniProt	A6IKK8	ENTREZGENE, UniProtKB/TrEMBL
	A6IKK9	ENTREZGENE, UniProtKB/TrEMBL
	Q642B3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Rhbdd3	rhomboid domain containing 3	RGD1311827	similar to RIKEN cDNA 5730411O18 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311827	similar to RIKEN cDNA 5730411O18 gene	RGD1311827_predicted	similar to RIKEN cDNA 5730411O18 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311827_predicted	similar to RIKEN cDNA 5730411O18 gene (predicted)	LOC289753_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289753_predicted	similar to RIKEN cDNA 5730411O18 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD