Sytl2 (synaptotagmin-like 2) - Rat Genome Database

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Gene: Sytl2 (synaptotagmin-like 2) Rattus norvegicus
Analyze
Symbol: Sytl2
Name: synaptotagmin-like 2
RGD ID: 1307647
Description: Predicted to enable neurexin family protein binding activity; phosphatase binding activity; and phospholipid binding activity. Predicted to be involved in positive regulation of mucus secretion and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein localization to plasma membrane. Predicted to be located in melanosome and membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL2 (synaptotagmin like 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361604; MGC189337; synaptotagmin-like protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,685,403 - 153,791,758 (+)NCBIGRCr8
mRatBN7.21144,272,870 - 144,379,310 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,273,360 - 144,379,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,196,100 - 152,302,039 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,372,674 - 159,480,256 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,246,593 - 152,354,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01156,334,298 - 156,440,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01154,536,592 - 154,599,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,579,949 - 154,599,430 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,335,279 - 156,354,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,800,567 - 160,863,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41146,977,959 - 147,084,664 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,493,600 - 142,599,739 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sytl2RatCOVID-19  ISOSYTL2 (Homo sapiens)9068941mRNA:decreased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sytl2Ratangioedema  ISOSYTL2 (Homo sapiens)8554872ClinVar Annotator: match by term: AngioedemaClinVarPMID:28327206
Sytl2Ratexudative vitreoretinopathy 1  ISOSYTL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Exudative vitreoretinopathy 1ClinVarPMID:21097938 and PMID:21681106
Sytl2Ratintellectual disability  ISOSYTL2 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

1 to 20 of 124 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sytl2Rat1,2-dimethylhydrazine decreases expressionISOSytl2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SYTL2 mRNACTDPMID:22206623
Sytl2Rat17alpha-ethynylestradiol affects expressionISOSytl2 (Mus musculus)6480464Ethinyl Estradiol affects the expression of SYTL2 mRNACTDPMID:17555576
Sytl2Rat17beta-estradiol multiple interactionsISOSYTL2 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of SYTL2 mRNA and EGF protein inhibits the reaction [Estradiol results in decreased expression of SYTL2 mRNA]CTDPMID:24758408 and PMID:30165855
Sytl2Rat17beta-estradiol decreases expressionISOSytl2 (Mus musculus)6480464Estradiol results in decreased expression of SYTL2 mRNACTDPMID:39298647
Sytl2Rat17beta-estradiol decreases expressionISOSYTL2 (Homo sapiens)6480464Estradiol results in decreased expression of SYTL2 mRNACTDPMID:24758408
Sytl2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SYTL2 mRNACTDPMID:22298810 and PMID:34747641
Sytl2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of SYTL2 mRNACTDPMID:33387578
Sytl2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSYTL2 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of SYTL2 mRNACTDPMID:22298810
Sytl2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSytl2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of SYTL2 mRNACTDPMID:19770486 and PMID:25270620
Sytl2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSytl2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SYTL2 mRNACTDPMID:21570461
Sytl2Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of SYTL2 mRNACTDPMID:21346803
Sytl2Rat2-hydroxypropanoic acid decreases expressionISOSYTL2 (Homo sapiens)6480464Lactic Acid results in decreased expression of SYTL2 mRNACTDPMID:30851411
Sytl2Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOSytl2 (Mus musculus)6480464tetrabromobisphenol A results in decreased expression of SYTL2 mRNACTDPMID:25172293
Sytl2Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOSYTL2 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of SYTL2 mRNACTDPMID:28628672
Sytl2Rat4,4'-diaminodiphenylmethane increases expressionISOSytl2 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of SYTL2 mRNACTDPMID:18648102
Sytl2Rat4,4'-sulfonyldiphenol decreases expressionISOSYTL2 (Homo sapiens)6480464bisphenol S results in decreased expression of SYTL2 mRNACTDPMID:25912373
Sytl2Rat4,4'-sulfonyldiphenol decreases methylationISOSYTL2 (Homo sapiens)6480464bisphenol S results in decreased methylation of SYTL2 geneCTDPMID:31601247
Sytl2Rat4,4'-sulfonyldiphenol decreases expressionISOSytl2 (Mus musculus)6480464bisphenol S results in decreased expression of SYTL2 mRNACTDPMID:39298647
Sytl2Rat4,4'-sulfonyldiphenol increases expressionISOSytl2 (Mus musculus)6480464bisphenol S results in increased expression of SYTL2 mRNACTDPMID:30951980
Sytl2Rat5-fluorouracil increases expressionISOSYTL2 (Homo sapiens)6480464Fluorouracil results in increased expression of SYTL2 mRNACTDPMID:16510598

1 to 20 of 124 rows

Biological Process

  

Cellular Component
1 to 10 of 10 rows

  
1 to 10 of 10 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:11243866   PMID:11773082   PMID:12477932   PMID:16716193   PMID:17182843   PMID:18266782   PMID:18812475   PMID:19389623   PMID:24284068  



Sytl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,685,403 - 153,791,758 (+)NCBIGRCr8
mRatBN7.21144,272,870 - 144,379,310 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,273,360 - 144,379,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,196,100 - 152,302,039 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,372,674 - 159,480,256 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,246,593 - 152,354,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01156,334,298 - 156,440,327 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01154,536,592 - 154,599,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,579,949 - 154,599,430 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1156,335,279 - 156,354,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,800,567 - 160,863,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41146,977,959 - 147,084,664 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,493,600 - 142,599,739 (+)NCBICelera
Cytogenetic Map1q32NCBI
SYTL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,694,229 - 85,854,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,694,224 - 85,811,159 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,405,272 - 85,565,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,082,912 - 85,146,692 (-)NCBINCBI36Build 36hg18NCBI36
Build 341185,082,914 - 85,107,859NCBI
Celera1182,714,568 - 82,831,481 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1181,702,610 - 81,819,526 (-)NCBIHuRef
CHM1_11185,290,075 - 85,406,976 (-)NCBICHM1_1
T2T-CHM13v2.01185,630,917 - 85,791,555 (-)NCBIT2T-CHM13v2.0
Sytl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39789,951,421 - 90,059,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl789,951,460 - 90,059,927 (+)EnsemblGRCm39 Ensembl
GRCm38790,302,211 - 90,410,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,302,252 - 90,410,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv37797,497,209 - 97,558,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36790,223,891 - 90,285,897 (+)NCBIMGSCv36mm8
Celera787,675,751 - 87,737,560 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map750.54NCBI
Sytl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554147,104,268 - 7,174,001 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554147,104,239 - 7,172,791 (+)NCBIChiLan1.0ChiLan1.0
SYTL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2986,616,996 - 86,773,315 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,664,954 - 87,823,384 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,749,861 - 80,866,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,358,095 - 84,474,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,358,155 - 84,421,509 (-)Ensemblpanpan1.1panPan2
SYTL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,639,054 - 13,756,332 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,688,338 - 13,755,414 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,505,757 - 13,623,017 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02113,819,767 - 13,937,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2113,819,798 - 13,937,013 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12113,608,437 - 13,725,706 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02113,680,690 - 13,797,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02113,733,418 - 13,850,744 (+)NCBIUU_Cfam_GSD_1.0
Sytl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494771,978,205 - 72,082,188 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649813,577,795 - 13,681,808 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649813,577,839 - 13,681,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYTL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl919,617,293 - 19,734,633 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1919,617,287 - 19,763,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2921,887,423 - 22,023,108 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYTL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1176,937,076 - 77,061,895 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604348,660,500 - 48,785,835 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sytl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248454,092,206 - 4,220,599 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Sytl2
973 total Variants

Predicted Target Of
Summary Value
Count of predictions:507
Count of miRNA genes:222
Interacting mature miRNAs:283
Transcripts:ENSRNOT00000042163, ENSRNOT00000045048
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 65 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat

1 to 10 of 65 rows
D1Mit21  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,314,913 - 144,315,053 (+)MAPPERmRatBN7.2
mRatBN7.21144,314,913 - 144,315,053 (-)MAPPERmRatBN7.2
Rnor_6.01154,535,070 - 154,535,209NCBIRnor6.0
Rnor_6.01156,399,063 - 156,399,202NCBIRnor6.0
Rnor_5.01162,645,185 - 162,645,324UniSTSRnor5.0
Rnor_5.01160,799,045 - 160,799,184UniSTSRnor5.0
RGSC_v3.41147,020,341 - 147,020,480UniSTSRGSC3.4
RGSC_v3.41147,020,340 - 147,020,480RGDRGSC3.4
RGSC_v3.11147,098,747 - 147,098,886RGD
Celera1142,535,144 - 142,535,283UniSTS
RH 3.4 Map11125.8RGD
RH 3.4 Map11125.8UniSTS
Cytogenetic Map1q32UniSTS
RH140314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,378,823 - 144,378,964 (+)MAPPERmRatBN7.2
mRatBN7.21144,378,823 - 144,378,964 (-)MAPPERmRatBN7.2
Rnor_6.01156,334,640 - 156,334,780NCBIRnor6.0
Rnor_6.01154,599,033 - 154,599,173NCBIRnor6.0
Rnor_5.01160,863,008 - 160,863,148UniSTSRnor5.0
Rnor_5.01162,580,762 - 162,580,902UniSTSRnor5.0
RGSC_v3.41147,084,260 - 147,084,400UniSTSRGSC3.4
Celera1142,599,257 - 142,599,397UniSTS
RH 3.4 Map11129.0UniSTS
Cytogenetic Map1q32UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
17 11 56 147 125 123 77 31 77 12 280 122 115 56 80 46


1 to 30 of 37 rows
RefSeq Transcripts NM_001108492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 37 rows

Ensembl Acc Id: ENSRNOT00000042163   ⟹   ENSRNOP00000039142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1156,335,279 - 156,354,353 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000045048   ⟹   ENSRNOP00000048585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,362,125 - 144,379,222 (+)Ensembl
Rnor_6.0 Ensembl1154,579,949 - 154,599,430 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103814   ⟹   ENSRNOP00000077270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,273,360 - 144,379,221 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114461   ⟹   ENSRNOP00000096638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1144,273,360 - 144,379,221 (+)Ensembl
RefSeq Acc Id: NM_001108492   ⟹   NP_001101962
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,886 - 153,791,758 (+)NCBI
mRatBN7.21144,273,360 - 144,379,224 (+)NCBI
RefSeq Acc Id: XM_008759651   ⟹   XP_008757873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,406 - 153,791,758 (+)NCBI
mRatBN7.21144,272,872 - 144,379,310 (+)NCBI
Rnor_6.01156,334,298 - 156,440,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082402   ⟹   XP_038938330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,405 - 153,791,758 (+)NCBI
mRatBN7.21144,272,872 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082407   ⟹   XP_038938335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,404 - 153,791,758 (+)NCBI
mRatBN7.21144,272,870 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082411   ⟹   XP_038938339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,403 - 153,791,758 (+)NCBI
mRatBN7.21144,272,870 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082420   ⟹   XP_038938348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,409 - 153,791,758 (+)NCBI
mRatBN7.21144,272,873 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082423   ⟹   XP_038938351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,865 - 153,791,758 (+)NCBI
mRatBN7.21144,273,342 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082427   ⟹   XP_038938355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,865 - 153,791,758 (+)NCBI
mRatBN7.21144,273,342 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_039082431   ⟹   XP_038938359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,865 - 153,791,758 (+)NCBI
mRatBN7.21144,273,337 - 144,379,310 (+)NCBI
RefSeq Acc Id: XM_063266999   ⟹   XP_063123069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,686,027 - 153,791,758 (+)NCBI
RefSeq Acc Id: XM_063267013   ⟹   XP_063123083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,686,027 - 153,791,758 (+)NCBI
RefSeq Acc Id: XM_063267027   ⟹   XP_063123097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,686,004 - 153,791,758 (+)NCBI
RefSeq Acc Id: XM_063267036   ⟹   XP_063123106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,999 - 153,791,758 (+)NCBI
RefSeq Acc Id: XM_063267042   ⟹   XP_063123112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81153,685,866 - 153,791,758 (+)NCBI
1 to 5 of 18 rows
1 to 5 of 18 rows
RefSeq Acc Id: XP_008757873   ⟸   XM_008759651
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM63 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048585   ⟸   ENSRNOT00000045048
Ensembl Acc Id: ENSRNOP00000039142   ⟸   ENSRNOT00000042163
RefSeq Acc Id: XP_038938335   ⟸   XM_039082407
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038938339   ⟸   XM_039082411
- Peptide Label: isoform X4
C2   RabBD

Name Modeler Protein Id AA Range Protein Structure
AF-B5DFB1-F1-model_v2 AlphaFold B5DFB1 1-376 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58530 BioCyc
Ensembl Genes ENSRNOG00000030776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000049878 Ensembl
Ensembl Transcript ENSRNOT00000045048.4 UniProtKB/TrEMBL
  ENSRNOT00000103814 ENTREZGENE
  ENSRNOT00000103814.1 UniProtKB/TrEMBL
  ENSRNOT00000114461 ENTREZGENE
  ENSRNOT00000114461.1 UniProtKB/TrEMBL
  ENSRNOT00000137733 ENTREZGENE
  ENSRNOT00000153378 ENTREZGENE
  ENSRNOT00000163984 ENTREZGENE
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  6.10.250.3000 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Rab_BD UniProtKB/TrEMBL
  SYTL1-5_C2B UniProtKB/TrEMBL
NCBI Gene 361604 ENTREZGENE
PANTHER BITESIZE, ISOFORM I UniProtKB/TrEMBL
  PTHR45716:SF5 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PhenoGen Sytl2 PhenoGen
PRINTS C2DOMAIN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
  RABBD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030776 RatGTEx
  ENSRNOG00000049878 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A8I5Y7C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8YSR3_RAT UniProtKB/TrEMBL
  B5DFB1_RAT UniProtKB/TrEMBL
UniProt Secondary F1LN23 UniProtKB/TrEMBL
  F1LNJ5 UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Sytl2  synaptotagmin-like 2   Sytl2_predicted  synaptotagmin-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sytl2_predicted  synaptotagmin-like 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED