Npas3 (neuronal PAS domain protein 3) - Rat Genome Database

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Gene: Npas3 (neuronal PAS domain protein 3) Rattus norvegicus
Analyze
Symbol: Npas3
Name: neuronal PAS domain protein 3
RGD ID: 1307181
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in positive regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within locomotory behavior; maternal behavior; and startle response. Predicted to be located in nucleoplasm. Orthologous to human NPAS3 (neuronal PAS domain protein 3); INTERACTS WITH 17beta-estradiol; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299016; neuronal PAS domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8676,438,064 - 77,263,185 (+)NCBIGRCr8
mRatBN7.2670,702,773 - 71,527,928 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0674,081,995 - 74,913,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0683,635,089 - 84,459,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4674,192,110 - 74,209,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1674,075,148 - 74,329,176 (+)NCBI
Celera669,567,922 - 70,382,732 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Npas3RatBrain-Lung-Thyroid Syndrome  ISONPAS3 (Homo sapiens)8554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868
Npas3Ratschizophrenia  ISONPAS3 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311

1 to 20 of 70 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Npas3Rat(S)-nicotine decreases expressionISONPAS3 (Homo sapiens)6480464Nicotine results in decreased expression of NPAS3 mRNACTDPMID:23825647
Npas3Rat1,2-dichloroethane decreases expressionISONpas3 (Mus musculus)6480464ethylene dichloride results in decreased expression of NPAS3 mRNACTDPMID:28960355
Npas3Rat1-naphthylamine affects response to substanceISONPAS3 (Homo sapiens)6480464NPAS3 gene SNP affects the susceptibility to 1-NaphthylamineCTDPMID:25622337
Npas3Rat17beta-estradiol multiple interactionsISONPAS3 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of NPAS3 mRNACTDPMID:19619570
Npas3Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of NPAS3 mRNACTDPMID:26496021
Npas3Rat17beta-estradiol decreases expressionISONPAS3 (Homo sapiens)6480464Estradiol results in decreased expression of NPAS3 mRNACTDPMID:19167446 and PMID:19619570
Npas3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONPAS3 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of NPAS3 mRNACTDPMID:19619570
Npas3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONpas3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of NPAS3 mRNACTDPMID:37172768
Npas3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISONpas3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NPAS3 mRNACTDPMID:21570461
Npas3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONPAS3 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of NPAS3 mRNACTDPMID:19619570
Npas3Rat4,4'-sulfonyldiphenol decreases expressionISONpas3 (Mus musculus)6480464bisphenol S results in decreased expression of NPAS3 mRNACTDPMID:39298647
Npas3Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of NPAS3 mRNACTDPMID:28959563
Npas3Rataflatoxin B1 decreases methylationISONPAS3 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of NPAS3 geneCTDPMID:27153756
Npas3Rataflatoxin B1 decreases expressionISONPAS3 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of NPAS3 mRNACTDPMID:32234424
Npas3Rataldehydo-D-glucose decreases expressionISONpas3 (Mus musculus)6480464Glucose results in decreased expression of NPAS3 mRNACTDPMID:31525975
Npas3Ratarsenite(3-) multiple interactionsISONPAS3 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to NPAS3 mRNA]CTDPMID:32406909
Npas3Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of NPAS3 geneCTDPMID:35440735
Npas3Ratbenzo[a]pyrene decreases expressionISONpas3 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of NPAS3 mRNACTDPMID:20713471
Npas3Ratbenzo[a]pyrene decreases expressionISONPAS3 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of NPAS3 mRNACTDPMID:32234424
Npas3Ratbenzo[a]pyrene decreases methylationISONpas3 (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of NPAS3 intronCTDPMID:27901495

1 to 20 of 70 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Npas3Ratnucleoplasm located_inISONPAS3 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Npas3Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Npas3Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Npas3Ratnucleus located_inISONpas3 (Mus musculus)1624291 PMID:15347806RGDPMID:15347806
Npas3Ratnucleus located_inIEAARBA:ARBA000263301600115GO_REF:0000117UniProtGO_REF:0000117

Molecular Function

  


#
Reference Title
Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:7743923   PMID:15347806   PMID:25862168   PMID:27782878  



Npas3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8676,438,064 - 77,263,185 (+)NCBIGRCr8
mRatBN7.2670,702,773 - 71,527,928 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0674,081,995 - 74,913,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0683,635,089 - 84,459,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4674,192,110 - 74,209,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1674,075,148 - 74,329,176 (+)NCBI
Celera669,567,922 - 70,382,732 (+)NCBICelera
Cytogenetic Map6q23NCBI
NPAS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381432,934,785 - 33,804,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1432,934,396 - 33,820,863 (+)EnsemblGRCh38hg38GRCh38
GRCh371433,408,085 - 34,273,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361432,478,200 - 33,340,702 (+)NCBINCBI36Build 36hg18NCBI36
Build 341432,478,273 - 33,340,066NCBI
Celera1413,273,962 - 14,138,956 (+)NCBICelera
Cytogenetic Map14q13.1NCBI
HuRef1413,641,962 - 14,390,327 (+)NCBIHuRef
CHM1_11433,407,064 - 34,271,980 (+)NCBICHM1_1
T2T-CHM13v2.01427,131,685 - 28,001,533 (+)NCBIT2T-CHM13v2.0
Npas3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391253,294,874 - 54,118,956 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1253,294,940 - 54,118,958 (+)EnsemblGRCm39 Ensembl
GRCm381253,248,026 - 54,072,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1253,248,677 - 54,072,175 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1253,248,157 - 54,072,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv371254,349,664 - 55,173,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361254,170,303 - 54,990,700 (+)NCBIMGSCv36mm8
Celera1254,549,790 - 55,376,477 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.31NCBI
Npas3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540927,137,667 - 27,975,282 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540927,134,610 - 27,975,282 (-)NCBIChiLan1.0ChiLan1.0
NPAS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21534,254,792 - 35,121,949 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11433,471,295 - 34,338,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01413,701,786 - 14,568,738 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11431,990,835 - 32,759,347 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1431,893,101 - 32,758,096 (+)Ensemblpanpan1.1panPan2
NPAS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1811,959,895 - 12,799,448 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha811,763,424 - 12,608,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0812,062,501 - 12,903,397 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl812,061,655 - 12,900,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1811,746,047 - 12,585,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0811,827,729 - 12,667,988 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0812,112,108 - 12,957,329 (+)NCBIUU_Cfam_GSD_1.0
Npas3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864043,803,562 - 44,639,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364947,310,005 - 8,143,610 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364947,965,156 - 8,144,244 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPAS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl765,928,075 - 66,800,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1765,924,986 - 66,800,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2770,862,116 - 70,974,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Npas3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248383,006,512 - 3,904,799 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248383,003,455 - 3,904,964 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Npas3
4961 total Variants

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:103
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000049945
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat

1 to 10 of 27 rows
RH131599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,410,376 - 71,410,591 (+)MAPPERmRatBN7.2
Rnor_6.0674,795,759 - 74,795,973NCBIRnor6.0
Rnor_5.0684,341,739 - 84,341,953UniSTSRnor5.0
RGSC_v3.4674,209,600 - 74,209,814UniSTSRGSC3.4
Celera670,265,014 - 70,265,228UniSTS
Cytogenetic Map6q23UniSTS
BE103570  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2670,845,494 - 70,845,651 (+)MAPPERmRatBN7.2
Rnor_6.0674,218,628 - 74,218,784NCBIRnor6.0
Rnor_5.0683,771,059 - 83,771,215UniSTSRnor5.0
RGSC_v3.4673,603,406 - 73,603,562UniSTSRGSC3.4
Celera669,704,588 - 69,704,744UniSTS
Cytogenetic Map6q23UniSTS
RH141323  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,526,284 - 71,526,481 (+)MAPPERmRatBN7.2
Rnor_6.0674,913,333 - 74,913,529NCBIRnor6.0
Rnor_5.0684,457,823 - 84,458,019UniSTSRnor5.0
RGSC_v3.4674,326,863 - 74,327,059UniSTSRGSC3.4
Celera670,381,089 - 70,381,285UniSTS
Cytogenetic Map6q23UniSTS
AU049986  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,437,889 - 71,438,156 (+)MAPPERmRatBN7.2
Rnor_6.0674,823,549 - 74,823,815NCBIRnor6.0
Rnor_5.0684,369,529 - 84,369,795UniSTSRnor5.0
RGSC_v3.4674,237,110 - 74,237,376UniSTSRGSC3.4
Celera670,292,531 - 70,292,797UniSTS
Cytogenetic Map6q23UniSTS
fc03e11.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,428,963 - 71,429,882 (+)MAPPERmRatBN7.2
Rnor_6.0674,814,625 - 74,815,541NCBIRnor6.0
Rnor_5.0684,360,605 - 84,361,521UniSTSRnor5.0
RGSC_v3.4674,228,186 - 74,229,102UniSTSRGSC3.4
Celera670,283,607 - 70,284,523UniSTS
Cytogenetic Map6q23UniSTS






1 to 20 of 20 rows
RefSeq Transcripts NM_001427296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 20 of 20 rows

Ensembl Acc Id: ENSRNOT00000097038   ⟹   ENSRNOP00000094656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl670,703,257 - 71,524,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109465   ⟹   ENSRNOP00000096479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl670,707,591 - 71,524,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115753   ⟹   ENSRNOP00000096867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)Ensembl
RefSeq Acc Id: NM_001427296   ⟹   NP_001414225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,307 - 77,263,185 (+)NCBI
RefSeq Acc Id: XM_039078152   ⟹   XP_038934080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,773 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078153   ⟹   XP_038934081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,773 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078154   ⟹   XP_038934082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078155   ⟹   XP_038934083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,065 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078156   ⟹   XP_038934084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078157   ⟹   XP_038934085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,067 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078158   ⟹   XP_038934086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078160   ⟹   XP_038934088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078161   ⟹   XP_038934089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,804 - 77,263,182 (+)NCBI
mRatBN7.2670,706,894 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078162   ⟹   XP_038934090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,067 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078163   ⟹   XP_038934091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,070 - 77,263,182 (+)NCBI
mRatBN7.2670,702,776 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078164   ⟹   XP_038934092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,665,738 - 77,263,182 (+)NCBI
mRatBN7.2670,930,752 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078165   ⟹   XP_038934093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,803 - 77,263,182 (+)NCBI
mRatBN7.2670,706,894 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_063261674   ⟹   XP_063117744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
RefSeq Acc Id: XM_063261675   ⟹   XP_063117745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,803 - 77,263,182 (+)NCBI
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: XP_038934080   ⟸   XM_039078152
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934081   ⟸   XM_039078153
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934082   ⟸   XM_039078154
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934083   ⟸   XM_039078155
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934085   ⟸   XM_039078157
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
bHLH   PAS


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37564 BioCyc
Ensembl Genes ENSRNOG00000068162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097038.1 UniProtKB/TrEMBL
  ENSRNOT00000109465 ENTREZGENE
  ENSRNOT00000109465.1 UniProtKB/TrEMBL
  ENSRNOT00000115753 ENTREZGENE
  ENSRNOT00000115753.1 UniProtKB/TrEMBL
  ENSRNOT00000152609 ENTREZGENE
  ENSRNOT00000166002 ENTREZGENE
  ENSRNOT00000166789 ENTREZGENE
  ENSRNOT00000173624 ENTREZGENE
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/TrEMBL
NCBI Gene 299016 ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA UniProtKB/TrEMBL
  NEURONAL PAS DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam PAS UniProtKB/TrEMBL
  PAS_3 UniProtKB/TrEMBL
PhenoGen Npas3 PhenoGen
PROSITE BHLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068162 RatGTEx
SMART HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
UniProt A0A8I6AMQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR06 ENTREZGENE, UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Npas3  neuronal PAS domain protein 3  Npas3  neuronal PAS domain protein 3  Data merged from RGD:149736521 737654 PROVISIONAL
2021-08-09 Npas3  neuronal PAS domain protein 3      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 Npas3  neuronal PAS domain protein 3   Npas3_predicted  neuronal PAS domain protein 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Npas3_predicted  neuronal PAS domain protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED