Kiaa1671 (KIAA1671 homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kiaa1671 (KIAA1671 homolog) Rattus norvegicus
Analyze
Symbol: Kiaa1671 (Ensembl: RGD1306556)
Name: KIAA1671 homolog (Ensembl:RIKEN cDNA 2900026A02 gene)
RGD ID: 1306556
Description: Orthologous to human KIAA1671 (KIAA1671); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KIAA1671 ortholog; LOC288744; RGD1306556; RGD1560125; similar to hypothetical protein A530094D01; uncharacterized protein KIAA1671 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,069,929 - 49,212,604 (+)NCBIGRCr8
mRatBN7.21243,409,479 - 43,552,152 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,411,069 - 43,552,157 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,575,688 - 44,718,687 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,188,707 - 45,331,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,249,235 - 44,391,897 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,418,026 - 49,561,038 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,419,582 - 49,561,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,192,341 - 51,333,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41244,451,049 - 44,559,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.41244,451,049 - 44,472,941 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11244,343,744 - 44,423,316 (+)NCBI
Celera1245,005,990 - 45,147,926 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090  


Genomics

Comparative Map Data
Kiaa1671
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,069,929 - 49,212,604 (+)NCBIGRCr8
mRatBN7.21243,409,479 - 43,552,152 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,411,069 - 43,552,157 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,575,688 - 44,718,687 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,188,707 - 45,331,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,249,235 - 44,391,897 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,418,026 - 49,561,038 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,419,582 - 49,561,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,192,341 - 51,333,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41244,451,049 - 44,559,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.41244,451,049 - 44,472,941 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11244,343,744 - 44,423,316 (+)NCBI
Celera1245,005,990 - 45,147,926 (+)NCBICelera
Cytogenetic Map12q16NCBI
KIAA1671
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,952,716 - 25,197,448 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,952,716 - 25,197,448 (+)EnsemblGRCh38hg38GRCh38
GRCh372225,348,683 - 25,593,415 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,740,407 - 23,916,747 (+)NCBINCBI36Build 36hg18NCBI36
Celera229,228,329 - 9,397,741 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef228,371,744 - 8,541,096 (+)NCBIHuRef
CHM1_12225,382,674 - 25,552,037 (+)NCBICHM1_1
T2T-CHM13v2.02225,414,302 - 25,658,633 (+)NCBIT2T-CHM13v2.0
2900026A02Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,234,189 - 113,369,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,234,189 - 113,369,102 (-)EnsemblGRCm39 Ensembl
GRCm385113,086,323 - 113,221,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,086,323 - 113,221,236 (-)EnsemblGRCm38mm10GRCm38
MGSCv375113,515,343 - 113,592,333 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,329,253 - 113,403,594 (-)NCBIMGSCv36mm8
Celera5110,206,250 - 110,283,659 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.38NCBI
Kiaa1671
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545561,151 - 180,913 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545553,731 - 193,113 (-)NCBIChiLan1.0ChiLan1.0
KIAA1671
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22334,851,016 - 35,096,484 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,549,681 - 37,794,945 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0225,907,062 - 6,152,632 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,633,734 - 23,817,378 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,648,362 - 23,817,378 (+)Ensemblpanpan1.1panPan2
KIAA1671
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12619,124,243 - 19,282,890 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2619,139,288 - 19,276,144 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,946,901 - 19,148,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02619,446,257 - 19,648,179 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2619,502,111 - 19,644,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12619,151,682 - 19,353,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02619,417,379 - 19,619,233 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02619,486,626 - 19,688,559 (+)NCBIUU_Cfam_GSD_1.0
Kiaa1671
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118115,572,786 - 115,712,372 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936657198,513 - 297,949 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936657198,497 - 297,919 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1671
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11442,987,547 - 43,189,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21445,771,027 - 45,899,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA1671
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1198,048,629 - 8,291,211 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl198,121,422 - 8,288,920 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045118,239,832 - 118,496,872 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kiaa1671
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,903,902 - 2,087,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247471,896,469 - 2,087,323 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kiaa1671
1124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:79
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000000901
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

Markers in Region
D12Wox23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21243,470,440 - 43,470,670 (+)MAPPERmRatBN7.2
Rnor_6.01249,479,175 - 49,479,404NCBIRnor6.0
Rnor_5.01251,253,273 - 51,253,502UniSTSRnor5.0
RGSC_v3.41244,479,374 - 44,479,603UniSTSRGSC3.4
Celera1245,066,876 - 45,067,105UniSTS
Cytogenetic Map12q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 4 23 15 15 29 28 25 11
Low 39 34 26 19 26 8 11 45 7 16 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001402472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082998   ⟹   ENSRNOP00000070952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1243,411,069 - 43,552,157 (+)Ensembl
Rnor_6.0 Ensembl1249,419,582 - 49,561,038 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095507   ⟹   ENSRNOP00000094014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1243,471,125 - 43,552,157 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119382   ⟹   ENSRNOP00000097170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1243,495,983 - 43,552,157 (+)Ensembl
RefSeq Acc Id: NM_001402472   ⟹   NP_001389401
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,069,940 - 49,212,604 (+)NCBI
mRatBN7.21243,409,479 - 43,552,152 (+)NCBI
RefSeq Acc Id: XM_006249575   ⟹   XP_006249637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,157,018 - 49,212,604 (+)NCBI
mRatBN7.21243,496,335 - 43,552,152 (+)NCBI
Rnor_6.01249,504,255 - 49,561,037 (+)NCBI
Rnor_5.01251,192,341 - 51,333,677 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249576   ⟹   XP_006249638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,131,401 - 49,212,604 (+)NCBI
mRatBN7.21243,470,941 - 43,552,152 (+)NCBI
Rnor_6.01249,479,639 - 49,561,038 (+)NCBI
Rnor_5.01251,192,341 - 51,333,677 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598547   ⟹   XP_017454036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,069,929 - 49,212,604 (+)NCBI
mRatBN7.21243,409,479 - 43,552,152 (+)NCBI
Rnor_6.01249,418,026 - 49,561,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090200   ⟹   XP_038946128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,069,994 - 49,212,604 (+)NCBI
mRatBN7.21243,409,538 - 43,552,152 (+)NCBI
RefSeq Acc Id: XM_063271226   ⟹   XP_063127296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81249,071,476 - 49,212,604 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006249638   ⟸   XM_006249576
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249637   ⟸   XM_006249575
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AS67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454036   ⟸   XM_017598547
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZ88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070952   ⟸   ENSRNOT00000082998
RefSeq Acc Id: XP_038946128   ⟸   XM_039090200
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZ88 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094014   ⟸   ENSRNOT00000095507
RefSeq Acc Id: ENSRNOP00000097170   ⟸   ENSRNOT00000119382
RefSeq Acc Id: NP_001389401   ⟸   NM_001402472
- UniProtKB: A0A0G2JZ88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127296   ⟸   XM_063271226
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZ88 (UniProtKB/TrEMBL)
Protein Domains
Tankyrase 1-binding protein C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZ88-F1-model_v2 AlphaFold A0A0G2JZ88 1-1770 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698726
Promoter ID:EPDNEW_R9247
Type:single initiation site
Name:RGD1306556_1
Description:similar to hypothetical protein A530094D01
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01249,419,808 - 49,419,868EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306556 AgrOrtholog
BioCyc Gene G2FUF-18890 BioCyc
Ensembl Genes ENSRNOG00000052424 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082998.2 UniProtKB/TrEMBL
  ENSRNOT00000095507 ENTREZGENE
  ENSRNOT00000095507.1 UniProtKB/TrEMBL
  ENSRNOT00000119382.1 UniProtKB/TrEMBL
InterPro Tankyrase-bd_C UniProtKB/TrEMBL
  TNKS1BP1-like UniProtKB/TrEMBL
KEGG Report rno:288744 UniProtKB/TrEMBL
NCBI Gene 288744 ENTREZGENE
PANTHER PTHR22042 UniProtKB/TrEMBL
  SIMILAR TO HYPOTHETICAL PROTEIN A530094D01 UniProtKB/TrEMBL
Pfam Tankyrase_bdg_C UniProtKB/TrEMBL
PhenoGen Kiaa1671 PhenoGen
RatGTEx ENSRNOG00000052424 RatGTEx
SMART Tankyrase_bdg_C UniProtKB/TrEMBL
UniProt A0A0G2JZ88 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS67 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Kiaa1671  KIAA1671 homolog  RGD1306556  similar to hypothetical protein A530094D01  Symbol and Name Changed 1299863 APPROVED
2022-03-17 RGD1306556  similar to hypothetical protein A530094D01  Kiaa1671  KIAA1671 ortholog  Data merged from RGD:9342841 737654 PROVISIONAL
2015-08-13 Kiaa1671  KIAA1671 ortholog  RGD1560125  similar to OTTHUMP00000028561  Data merged from RGD:1560125 737654 PROVISIONAL
2014-08-25 Kiaa1671  KIAA1671 ortholog      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1306556  similar to hypothetical protein A530094D01   RGD1306556_predicted  similar to hypothetical protein A530094D01 (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1560125  similar to OTTHUMP00000028561   RGD1560125_predicted  similar to OTTHUMP00000028561 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560125_predicted  similar to OTTHUMP00000028561 (predicted)  LOC360825  similar to OTTHUMP00000028561  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC360825  similar to OTTHUMP00000028561      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1306556_predicted  similar to hypothetical protein A530094D01 (predicted)  LOC288744_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288744_predicted  similar to hypothetical protein A530094D01 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL