Rabl3 (RAB, member of RAS oncogene family-like 3) - Rat Genome Database

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Gene: Rabl3 (RAB, member of RAS oncogene family-like 3) Rattus norvegicus
Analyze
Symbol: Rabl3
Name: RAB, member of RAS oncogene family-like 3
RGD ID: 1306436
Description: Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; protein stabilization; and regulation of Ras protein signal transduction. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC360720; rab-like protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81176,658,723 - 76,687,681 (-)NCBIGRCr8
mRatBN7.21163,153,281 - 63,182,240 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,152,792 - 63,182,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,965,728 - 71,994,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01164,627,964 - 64,656,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,677,345 - 63,706,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,049,635 - 66,078,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,049,635 - 66,078,669 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,141,805 - 69,170,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,943,199 - 64,972,157 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,000,840 - 65,029,761 (-)NCBI
Celera1162,649,550 - 62,678,508 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rabl3Ratalkaptonuria  ISORGD:13150508554872ClinVar Annotator: match by term: AlkaptonuriaClinVarPMID:12501223|PMID:19862842|PMID:28492532
Rabl3Ratpancreatic cancer  ISORGD:13150508554872ClinVar Annotator: match by term: Pancreatic cancer, susceptibility to, 5 | ClinVar Annotator: match by more ...ClinVarPMID:31406347
Rabl3RatPrimary Lymphedema with Myelodysplasia  ISORGD:13150508554872ClinVar Annotator: match by term: Lymphedema, primary, with myelodysplasiaClinVarPMID:19449416|PMID:22147895|PMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rabl3Ratpancreatic cancer  ISORGD:131505011554173CTD Direct Evidence: marker/mechanismCTDPMID:31406347
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rabl3Ratpancreatic cancer susceptibilityISORGD:13150507240710 OMIM 

1 to 20 of 58 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rabl3Rat1,2-dimethylhydrazine decreases expressionISORGD:131505164804641,2-Dimethylhydrazine results in decreased expression of RABL3 mRNACTDPMID:22206623
Rabl3Rat17beta-estradiol increases expressionISORGD:13150516480464Estradiol results in increased expression of RABL3 mRNACTDPMID:39298647
Rabl3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13150516480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RABL3 promoter]CTDPMID:19654925
Rabl3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RABL3 mRNACTDPMID:33387578
Rabl3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13150516480464Tetrachlorodibenzodioxin affects the expression of RABL3 mRNACTDPMID:21570461
Rabl3Rat2,6-dinitrotoluene affects expressionEXP 64804642,6-dinitrotoluene affects the expression of RABL3 mRNACTDPMID:21346803
Rabl3Rat2-hydroxypropanoic acid decreases expressionISORGD:13150506480464Lactic Acid results in decreased expression of RABL3 mRNACTDPMID:30851411
Rabl3Rat4,4'-diaminodiphenylmethane increases expressionISORGD:131505164804644,4'-diaminodiphenylmethane results in increased expression of RABL3 mRNACTDPMID:18648102
Rabl3Rat4,4'-sulfonyldiphenol increases expressionISORGD:13150516480464bisphenol S results in increased expression of RABL3 mRNACTDPMID:39298647
Rabl3Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of RABL3 mRNACTDPMID:38685447
Rabl3Ratantirheumatic drug increases expressionISORGD:13150506480464Antirheumatic Agents results in increased expression of RABL3 mRNACTDPMID:24449571
Rabl3Rataristolochic acid A decreases expressionISORGD:13150506480464aristolochic acid I results in decreased expression of RABL3 mRNACTDPMID:33212167
Rabl3Ratarsenite(3-) decreases expressionISORGD:13150516480464arsenite results in decreased expression of RABL3 proteinCTDPMID:37955338
Rabl3Ratarsenous acid multiple interactionsISORGD:13150506480464Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to RABL3 protein]CTDPMID:26598702
Rabl3Ratatrazine decreases expressionISORGD:13150506480464Atrazine results in decreased expression of RABL3 mRNACTDPMID:22378314
Rabl3RatBenoxacor decreases expressionISORGD:13150516480464benoxacor results in decreased expression of RABL3 mRNACTDPMID:34850242
Rabl3Ratbenzo[a]pyrene increases expressionISORGD:13150516480464Benzo(a)pyrene results in increased expression of RABL3 mRNACTDPMID:22228805
Rabl3Ratbenzo[a]pyrene increases methylationISORGD:13150516480464Benzo(a)pyrene results in increased methylation of RABL3 3' UTR; Benzo(a)pyrene results in increased methylation of more ...CTDPMID:27901495
Rabl3Ratbeta-lapachone increases expressionISORGD:13150506480464beta-lapachone results in increased expression of RABL3 mRNACTDPMID:38218311
Rabl3Ratbisphenol A decreases expressionISORGD:13150516480464bisphenol A results in decreased expression of RABL3 mRNACTDPMID:33221593

1 to 20 of 58 rows

Biological Process
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Rabl3RatB cell differentiation involved_inIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107
Rabl3RatB cell differentiation involved_inISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3Ratintracellular protein transport involved_inIBACGD:CAL0000181874|CGD:CAL0000194609|CGD:CAL0000201225|PANTHER:PTN001292747|SGD:S000001722|SGD:S000001856|SGD:S000004252|SGD:S000005037|SGD:S000005615|TAIR:locus:2123010|UniProtKB:Q0ILQ6|UniProtKB:Q5B6I81600115GO_REF:0000033GO_CentralGO_REF:0000033
Rabl3Ratnatural killer cell differentiation involved_inISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3Ratnatural killer cell differentiation involved_inIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107
Rabl3Ratprotein stabilization involved_inISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3Ratprotein stabilization involved_inIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107
Rabl3Ratregulation of protein lipidation involved_inISORGD:13150501624291 PMID:31406347RGDPMID:31406347
Rabl3Ratregulation of Ras protein signal transduction involved_inISORGD:13150501624291 PMID:31406347RGDPMID:31406347
Rabl3Ratregulation of Ras protein signal transduction involved_inIEAUniProtKB:Q5HYI8|ensembl:ENSP000002733751600115GO_REF:0000107EnsemblGO_REF:0000107
Rabl3RatT cell differentiation in thymus involved_inISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3RatT cell differentiation in thymus involved_inIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component

  
Object Symbol
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Term
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Reference
Notes
Source
Original Reference(s)
Rabl3Ratendomembrane system is_active_inIBACGD:CAL0000194609|CGD:CAL0000201225|FB:FBgn0015791|FB:FBgn0015793|FB:FBgn0015794|FB:FBgn0039966|FB:FBgn0285937|MGI:105926|MGI:894313|MGI:97842|MGI:99833|PANTHER:PTN001292747|RGD:1306489|RGD:1307095|RGD:620881|RGD:620892|RGD:620936|RGD:628598|SGD:S000001722|SGD:S000004252|SGD:S000005037|SGD:S000005248|SGD:S000005615|TAIR:locus:2029167|TAIR:locus:2041036|TAIR:locus:2042321|TAIR:locus:2081486|TAIR:locus:2082672|TAIR:locus:2123010|TAIR:locus:2124092|UniProtKB:A0A5K1K8H7|UniProtKB:D6XLG8|UniProtKB:O14966|UniProtKB:O96193|UniProtKB:P18066|UniProtKB:P20339|UniProtKB:P20340|UniProtKB:P51147|UniProtKB:P57729|UniProtKB:P61106|UniProtKB:P62820|UniProtKB:Q13636|UniProtKB:Q13637|UniProtKB:Q53S08|UniProtKB:Q5B3G5|UniProtKB:Q5B6I8|UniProtKB:Q86YS6|UniProtKB:Q8IHR8|UniProtKB:Q9H0N0|UniProtKB:Q9H0U4|UniProtKB:Q9NP72|UniProtKB:Q9NRW1|UniProtKB:Q9NX57|UniProtKB:Q9UL25|UniProtKB:Q9UL26|WB:WBGene00004268|WB:WBGene00004269|WB:WBGene00004270|WB:WBGene00004276|ZFIN:ZDB-GENE-031118-30|dictyBase:DDB_G02719841600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rabl3RatGTP binding enablesISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3RatGTP binding enablesIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107
Rabl3RatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
Rabl3RatGTPase activity enablesIBAFB:FBgn0015797|FB:FBgn0285937|MGI:105072|MGI:105926|MGI:2443036|PANTHER:PTN001292747|PomBase:SPAC4C5.02c|PomBase:SPBC1703.10|SGD:S000001722|SGD:S000001856|SGD:S000004252|SGD:S000005037|SGD:S000005615|TAIR:locus:2041036|TAIR:locus:2082672|TAIR:locus:505006713|UniProtKB:P20339|UniProtKB:P20340|UniProtKB:P51148|UniProtKB:P61020|UniProtKB:P61106|UniProtKB:P62820|UniProtKB:Q13637|UniProtKB:Q86YS6|UniProtKB:Q9H0N0|UniProtKB:Q9H0T7|UniProtKB:Q9UL25|UniProtKB:Q9UL26|UniProtKB:Q9ULC3|WB:WBGene000042681600115GO_REF:0000033GO_CentralGO_REF:0000033
Rabl3Ratprotein binding enablesISORGD:13150511624291UniProtKB:Q8BS95 PMID:32220963RGDPMID:32220963
Rabl3Ratprotein binding enablesISORGD:13150501624291UniProtKB:P52306 PMID:31406347RGDPMID:31406347
Rabl3Ratprotein homodimerization activity enablesISORGD:13150511624291 PMID:32220963RGDPMID:32220963
Rabl3Ratprotein homodimerization activity enablesIEAUniProtKB:Q9D4V7|ensembl:ENSMUSP000000235241600115GO_REF:0000107EnsemblGO_REF:0000107


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:31406347  



Rabl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81176,658,723 - 76,687,681 (-)NCBIGRCr8
mRatBN7.21163,153,281 - 63,182,240 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,152,792 - 63,182,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,965,728 - 71,994,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01164,627,964 - 64,656,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,677,345 - 63,706,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,049,635 - 66,078,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,049,635 - 66,078,669 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,141,805 - 69,170,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,943,199 - 64,972,157 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,000,840 - 65,029,761 (-)NCBI
Celera1162,649,550 - 62,678,508 (-)NCBICelera
Cytogenetic Map11q21NCBI
RABL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383120,684,938 - 120,742,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3120,684,938 - 120,742,993 (-)EnsemblGRCh38hg38GRCh38
GRCh373120,403,785 - 120,461,527 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363121,888,218 - 121,944,074 (-)NCBINCBI36Build 36hg18NCBI36
Build 343121,890,112 - 121,944,053NCBI
Celera3118,814,920 - 118,871,134 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3117,779,338 - 117,835,467 (-)NCBIHuRef
CHM1_13120,369,195 - 120,425,034 (-)NCBICHM1_1
T2T-CHM13v2.03123,404,816 - 123,462,558 (-)NCBIT2T-CHM13v2.0
Rabl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391637,360,220 - 37,392,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1637,360,247 - 37,392,747 (+)EnsemblGRCm39 Ensembl
GRCm381637,539,858 - 37,572,385 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1637,539,885 - 37,572,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371637,539,980 - 37,572,471 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361637,459,139 - 37,491,621 (+)NCBIMGSCv36mm8
Celera1637,947,802 - 37,980,275 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.39NCBI
Rabl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542720,204,901 - 20,242,242 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542720,204,901 - 20,242,242 (-)NCBIChiLan1.0ChiLan1.0
RABL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,648,983 - 118,704,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13118,653,761 - 118,709,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03117,794,224 - 117,850,184 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13124,704,844 - 124,760,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3124,707,984 - 124,748,983 (-)Ensemblpanpan1.1panPan2
RABL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,107,754 - 24,151,378 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,066,306 - 24,151,354 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,143,268 - 24,180,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03324,353,911 - 24,391,529 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3324,306,037 - 24,391,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,154,610 - 24,192,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03324,194,902 - 24,232,482 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03324,759,120 - 24,796,702 (-)NCBIUU_Cfam_GSD_1.0
Rabl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,103,963 - 130,155,337 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365367,366,625 - 7,418,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365367,366,669 - 7,417,951 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13139,603,454 - 139,652,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113139,609,164 - 139,653,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RABL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12260,095,013 - 60,133,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2260,095,066 - 60,136,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041106,171,725 - 106,209,701 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473127,484,497 - 27,535,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473127,484,856 - 27,537,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rabl3
108 total Variants

Predicted Target Of
Summary Value
Count of predictions:544
Count of miRNA genes:246
Interacting mature miRNAs:289
Transcripts:ENSRNOT00000031741
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

1 to 10 of 24 rows
RH133956  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21163,153,314 - 63,153,534 (+)MAPPERmRatBN7.2
Rnor_6.01166,049,669 - 66,049,888NCBIRnor6.0
Rnor_5.01169,141,839 - 69,142,058UniSTSRnor5.0
RGSC_v3.41164,943,233 - 64,943,452UniSTSRGSC3.4
Celera1162,649,584 - 62,649,803UniSTS
RH 3.4 Map11498.1UniSTS
Cytogenetic Map11q21UniSTS
RH134499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21163,152,830 - 63,153,025 (+)MAPPERmRatBN7.2
Rnor_6.01166,049,185 - 66,049,379NCBIRnor6.0
Rnor_5.01169,141,355 - 69,141,549UniSTSRnor5.0
RGSC_v3.41164,942,749 - 64,942,943UniSTSRGSC3.4
Celera1162,649,100 - 62,649,294UniSTS
RH 3.4 Map11490.3UniSTS
Cytogenetic Map11q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000031741   ⟹   ENSRNOP00000033847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,152,792 - 63,182,255 (-)Ensembl
Rnor_6.0 Ensembl1166,049,635 - 66,078,669 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102649   ⟹   ENSRNOP00000080086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,152,792 - 63,182,255 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107317   ⟹   ENSRNOP00000097163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,153,281 - 63,182,671 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107503   ⟹   ENSRNOP00000085454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,153,281 - 63,182,671 (-)Ensembl
RefSeq Acc Id: NM_001108319   ⟹   NP_001101789
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81176,658,723 - 76,687,681 (-)NCBI
mRatBN7.21163,153,281 - 63,182,240 (-)NCBI
Rnor_6.01166,049,635 - 66,078,669 (-)NCBI
Rnor_5.01169,141,805 - 69,170,839 (-)NCBI
RGSC_v3.41164,943,199 - 64,972,157 (-)RGD
Celera1162,649,550 - 62,678,508 (-)RGD
Sequence:
Protein RefSeqs NP_001101789 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11245 (Get FASTA)   NCBI Sequence Viewer  
  EDM11246 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033847.4
  ENSRNOP00000080086.1
  ENSRNOP00000085454
  ENSRNOP00000085454.1
  ENSRNOP00000097163.1
RefSeq Acc Id: NP_001101789   ⟸   NM_001108319
- UniProtKB: A6IR92 (UniProtKB/TrEMBL),   A0A8I6A072 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033847   ⟸   ENSRNOT00000031741
Ensembl Acc Id: ENSRNOP00000080086   ⟸   ENSRNOT00000102649
Ensembl Acc Id: ENSRNOP00000085454   ⟸   ENSRNOT00000107503
Ensembl Acc Id: ENSRNOP00000097163   ⟸   ENSRNOT00000107317

Name Modeler Protein Id AA Range Protein Structure
AF-D4A1C1-F1-model_v2 AlphaFold D4A1C1 1-236 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698175
Promoter ID:EPDNEW_R8700
Type:multiple initiation site
Name:Rabl3_1
Description:RAB, member of RAS oncogene family-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01166,078,666 - 66,078,726EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21254 BioCyc
Ensembl Genes ENSRNOG00000026085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031741.4 UniProtKB/TrEMBL
  ENSRNOT00000102649.1 UniProtKB/TrEMBL
  ENSRNOT00000107317.1 UniProtKB/TrEMBL
  ENSRNOT00000107503 ENTREZGENE
  ENSRNOT00000107503.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:360720 UniProtKB/TrEMBL
NCBI Gene 360720 ENTREZGENE
PANTHER DRAB5-RELATED UniProtKB/TrEMBL
Pfam Roc UniProtKB/TrEMBL
PhenoGen Rabl3 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026085 RatGTEx
SMART RAB UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZPU0_RAT UniProtKB/TrEMBL
  A0A8I6A072 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AN77_RAT UniProtKB/TrEMBL
  A6IR92 ENTREZGENE, UniProtKB/TrEMBL
  D4A1C1_RAT UniProtKB/TrEMBL
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rabl3  RAB, member of RAS oncogene family-like 3   Rabl3_predicted  RAB, member of RAS oncogene family-like 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rabl3_predicted  RAB, member of RAS oncogene family-like 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED