RABL3 (RAB, member of RAS oncogene family like 3) - Rat Genome Database

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Gene: RABL3 (RAB, member of RAS oncogene family like 3) Sus scrofa
Analyze
Symbol: RABL3
Name: RAB, member of RAS oncogene family like 3 (Ensembl:RAB, member of RAS onco family like 3)
RGD ID: 14110638
Description: ENCODES a protein that exhibits GTP binding (inferred); protein homodimerization activity (inferred); INVOLVED IN B cell differentiation (inferred); natural killer cell differentiation (inferred); protein stabilization (inferred); ASSOCIATED WITH alkaptonuria (ortholog); pancreatic cancer (ortholog); Primary Lymphedema with Myelodysplasia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13139,603,454 - 139,652,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113139,609,164 - 139,653,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
RABL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13139,603,454 - 139,652,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113139,609,164 - 139,653,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RABL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383120,684,938 - 120,742,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3120,684,938 - 120,742,993 (-)EnsemblGRCh38hg38GRCh38
GRCh373120,403,785 - 120,461,527 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363121,888,218 - 121,944,074 (-)NCBINCBI36Build 36hg18NCBI36
Build 343121,890,112 - 121,944,053NCBI
Celera3118,814,920 - 118,871,134 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3117,779,338 - 117,835,467 (-)NCBIHuRef
CHM1_13120,369,195 - 120,425,034 (-)NCBICHM1_1
T2T-CHM13v2.03123,404,816 - 123,462,558 (-)NCBIT2T-CHM13v2.0
Rabl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391637,360,220 - 37,392,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1637,360,247 - 37,392,747 (+)EnsemblGRCm39 Ensembl
GRCm381637,539,858 - 37,572,385 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1637,539,885 - 37,572,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371637,539,980 - 37,572,471 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361637,459,139 - 37,491,621 (+)NCBIMGSCv36mm8
Celera1637,947,802 - 37,980,275 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.39NCBI
Rabl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81176,658,723 - 76,687,681 (-)NCBIGRCr8
mRatBN7.21163,153,281 - 63,182,240 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,152,792 - 63,182,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,965,728 - 71,994,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01164,627,964 - 64,656,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,677,345 - 63,706,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,049,635 - 66,078,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,049,635 - 66,078,669 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,141,805 - 69,170,839 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,943,199 - 64,972,157 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,000,840 - 65,029,761 (-)NCBI
Celera1162,649,550 - 62,678,508 (-)NCBICelera
Cytogenetic Map11q21NCBI
Rabl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542720,204,901 - 20,242,242 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542720,204,901 - 20,242,242 (-)NCBIChiLan1.0ChiLan1.0
RABL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,648,983 - 118,704,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13118,653,761 - 118,709,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03117,794,224 - 117,850,184 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13124,704,844 - 124,760,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3124,707,984 - 124,748,983 (-)Ensemblpanpan1.1panPan2
RABL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,107,754 - 24,151,378 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,066,306 - 24,151,354 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,143,268 - 24,180,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03324,353,911 - 24,391,529 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3324,306,037 - 24,391,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,154,610 - 24,192,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03324,194,902 - 24,232,482 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03324,759,120 - 24,796,702 (-)NCBIUU_Cfam_GSD_1.0
Rabl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,103,963 - 130,155,337 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365367,366,625 - 7,418,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365367,366,669 - 7,417,951 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12260,095,013 - 60,133,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2260,095,066 - 60,136,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041106,171,725 - 106,209,701 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473127,484,497 - 27,535,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473127,484,856 - 27,537,365 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RABL3
498 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000043074   ⟹   ENSSSCP00000059546
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13139,603,454 - 139,652,328 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000056524   ⟹   ENSSSCP00000037094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13139,609,615 - 139,652,318 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000058308   ⟹   ENSSSCP00000043165
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13139,603,454 - 139,655,577 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000090478   ⟹   ENSSSCP00000074140
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13139,609,623 - 139,652,431 (+)Ensembl
RefSeq Acc Id: XM_021070305   ⟹   XP_020925964
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113139,609,164 - 139,653,951 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020925964   ⟸   XM_021070305
- UniProtKB: A0A287BTI7 (UniProtKB/TrEMBL),   A0A4X1T6W7 (UniProtKB/TrEMBL),   A0A4X1T6C8 (UniProtKB/TrEMBL),   A0A8D1SXY6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000043165   ⟸   ENSSSCT00000058308
Ensembl Acc Id: ENSSSCP00000074140   ⟸   ENSSSCT00000090478
Ensembl Acc Id: ENSSSCP00000037094   ⟸   ENSSSCT00000056524
Ensembl Acc Id: ENSSSCP00000059546   ⟸   ENSSSCT00000043074


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015028403 UniProtKB/TrEMBL
  ENSSSCG00025028329 UniProtKB/TrEMBL
  ENSSSCG00030074397 UniProtKB/TrEMBL
  ENSSSCG00035064352 UniProtKB/TrEMBL
  ENSSSCG00040023380 UniProtKB/TrEMBL
  ENSSSCG00045020082 UniProtKB/TrEMBL
  ENSSSCG00050078296 UniProtKB/TrEMBL
  ENSSSCG00055007769 UniProtKB/TrEMBL
  ENSSSCG00060012720 UniProtKB/TrEMBL
  ENSSSCG00065018128 UniProtKB/TrEMBL
  ENSSSCG00070006745 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043074 ENTREZGENE
  ENSSSCT00000043074.2 UniProtKB/TrEMBL
  ENSSSCT00000056524.3 UniProtKB/TrEMBL
  ENSSSCT00000090478.2 UniProtKB/TrEMBL
  ENSSSCT00015037810.1 UniProtKB/TrEMBL
  ENSSSCT00025038613.1 UniProtKB/TrEMBL
  ENSSSCT00030104394.1 UniProtKB/TrEMBL
  ENSSSCT00035086613.1 UniProtKB/TrEMBL
  ENSSSCT00040031379.1 UniProtKB/TrEMBL
  ENSSSCT00045034267.1 UniProtKB/TrEMBL
  ENSSSCT00050107869.1 UniProtKB/TrEMBL
  ENSSSCT00055015171.1 UniProtKB/TrEMBL
  ENSSSCT00060016708.1 UniProtKB/TrEMBL
  ENSSSCT00065024092.1 UniProtKB/TrEMBL
  ENSSSCT00070012957.1 UniProtKB/TrEMBL
  ENSSSCT00070012963.1 UniProtKB/TrEMBL
  ENSSSCT00070012970.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene RABL3 ENTREZGENE
PANTHER DRAB5-RELATED UniProtKB/TrEMBL
  RAB-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam Roc UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287BTI7 ENTREZGENE
  A0A4X1T6C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T6W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T6X2_PIG UniProtKB/TrEMBL
  A0A8D0ND00_PIG UniProtKB/TrEMBL
  A0A8D1HV24_PIG UniProtKB/TrEMBL
  A0A8D1SXY6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZZM2 UniProtKB/TrEMBL
  A0A287BTI7 UniProtKB/TrEMBL
  A0A5G2RN26 UniProtKB/TrEMBL
VGNC ID VGNC:98279 ENTREZGENE