Micall1 (MICAL-like 1) - Rat Genome Database

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Gene: Micall1 (MICAL-like 1) Rattus norvegicus
Analyze
Symbol: Micall1
Name: MICAL-like 1
RGD ID: 1305415
Description: Predicted to enable several functions, including identical protein binding activity; phosphatidic acid binding activity; and small GTPase binding activity. Involved in cellular response to nerve growth factor stimulus; neuron projection development; and protein localization to endosome. Located in endosome membrane. Orthologous to human MICALL1 (MICAL like 1); INTERACTS WITH (+)-schisandrin B; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362958; MICAL-like protein 1; RGD1305415; similar to CG11259-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,557,192 - 112,587,618 (+)NCBIGRCr8
mRatBN7.27110,676,706 - 110,707,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,676,775 - 110,707,177 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07120,343,900 - 120,375,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,345,180 - 120,375,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,338,867 - 120,369,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,087,550 - 117,113,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,121,779 - 117,147,344 (+)NCBI
Celera7107,009,963 - 107,041,663 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Micall1Ratadenylosuccinase lyase deficiency  ISOMICALL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Adenylosuccinate lyase deficiencyClinVarPMID:28492532
Micall1RatEmery-Dreifuss muscular dystrophy  ISOMICALL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Emery-Dreifuss muscular dystrophyClinVarPMID:16783378 more ...
Micall1Ratmyoclonic dystonia 26  ISOMICALL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Myoclonic dystonia 26ClinVarPMID:16783378 more ...
Micall1Ratneurodegeneration with brain iron accumulation 2A  ISOMICALL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Infantile neuroaxonal dystrophyClinVarPMID:16783378 more ...

1 to 20 of 94 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Micall1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of MICALL1 mRNA]CTDPMID:31150632
Micall1Rat1,2-dimethylhydrazine multiple interactionsISOMicall1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of MICALL1 mRNACTDPMID:22206623
Micall1Rat17beta-estradiol increases expressionISOMICALL1 (Homo sapiens)6480464Estradiol results in increased expression of MICALL1 mRNACTDPMID:20106945
Micall1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOMICALL1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Micall1Rat2,4,6-tribromophenol decreases expressionISOMICALL1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Micall1Rat4,4'-sulfonyldiphenol decreases expressionISOMicall1 (Mus musculus)6480464bisphenol S results in decreased expression of MICALL1 mRNACTDPMID:39298647
Micall1Rat4,4'-sulfonyldiphenol affects methylationISOMicall1 (Mus musculus)6480464bisphenol S affects the methylation of MICALL1 geneCTDPMID:31683443
Micall1Rat4,4'-sulfonyldiphenol increases methylationISOMicall1 (Mus musculus)6480464bisphenol S results in increased methylation of MICALL1 exonCTDPMID:33297965
Micall1Rat4-hydroxyphenyl retinamide decreases expressionISOMicall1 (Mus musculus)6480464Fenretinide results in decreased expression of MICALL1 mRNACTDPMID:28973697
Micall1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of MICALL1 mRNACTDPMID:24780913
Micall1Ratacrylamide decreases expressionISOMicall1 (Mus musculus)6480464Acrylamide results in decreased expression of MICALL1 mRNACTDPMID:30807115
Micall1Ratactinomycin D multiple interactionsISOMICALL1 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of MICALL1 mRNA and [Dactinomycin co-treated with nutlin 3] results in increased secretion of MICALL1 proteinCTDPMID:38460933
Micall1Rataflatoxin B1 affects expressionISOMICALL1 (Homo sapiens)6480464Aflatoxin B1 affects the expression of MICALL1 proteinCTDPMID:20106945
Micall1Rataflatoxin B1 increases expressionISOMICALL1 (Homo sapiens)6480464Aflatoxin B1 results in increased expression of MICALL1 mRNACTDPMID:21632981 and PMID:22100608
Micall1Rataflatoxin B1 increases expressionISOMicall1 (Mus musculus)6480464Aflatoxin B1 results in increased expression of MICALL1 mRNACTDPMID:19770486
Micall1Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of MICALL1 mRNACTDPMID:30779732
Micall1Ratarsane multiple interactionsISOMICALL1 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MICALL1 mRNACTDPMID:39836092
Micall1Ratarsenic atom multiple interactionsISOMICALL1 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MICALL1 mRNACTDPMID:39836092
Micall1Ratarsenite(3-) multiple interactionsISOMICALL1 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to MICALL1 mRNA]CTDPMID:32406909
Micall1Ratbenzo[a]pyrene increases expressionISOMICALL1 (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of MICALL1 mRNACTDPMID:20106945 more ...

1 to 20 of 94 rows

Biological Process
1 to 20 of 36 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
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Original Reference(s)
Micall1Ratcell migration involved in sprouting angiogenesis acts_upstream_of_or_withinISOMicall1 (Mus musculus)1624291 PMID:33972531RGDPMID:33972531
Micall1Ratcell migration involved in sprouting angiogenesis involved_inIEAUniProtKB:Q8BGT6 and ensembl:ENSMUSP000000420531600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcell migration involved in sprouting angiogenesis involved_inISOMicall1 (Mus musculus)1624291 PMID:33972531RGDPMID:33972531
Micall1Ratcellular response to nerve growth factor stimulus involved_inIDA 8554201PMID:23572513UniProt 
Micall1Ratcilium assembly involved_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcilium assembly involved_inISOMICALL1 (Homo sapiens)1624291 PMID:31615969RGDPMID:31615969
Micall1Ratcilium assembly involved_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratendocytic recycling involved_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratendocytic recycling involved_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratendocytic recycling involved_inISOMICALL1 (Homo sapiens)1624291 PMID:19864458RGDPMID:19864458
Micall1Ratendocytosis involved_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratendocytosis involved_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratendocytosis involved_inIEAUniProtKB-KW:KW-02541600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratendocytosis involved_inISOMICALL1 (Homo sapiens)1624291 PMID:20801876RGDPMID:20801876
Micall1Ratneuron projection development involved_inIMP 8554201PMID:23572513UniProt 
Micall1Ratneuron projection development involved_inISOMicall1 (Mus musculus)1624291 PMID:23572513RGDPMID:23572513
Micall1Ratneuron projection development involved_inIEAUniProtKB:Q8BGT6 and ensembl:ENSMUSP000000420531600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratplasma membrane tubulation involved_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratplasma membrane tubulation involved_inISOMICALL1 (Homo sapiens)1624291 PMID:23596323RGDPMID:23596323
Micall1Ratplasma membrane tubulation involved_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 36 rows

Cellular Component
1 to 20 of 30 rows

  
Object Symbol
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With
Reference
Notes
Source
Original Reference(s)
Micall1Ratadherens junction is_active_inISOMicall1 (Mus musculus)1624291 PMID:33972531RGDPMID:33972531
Micall1Ratadherens junction is_active_inIEAUniProtKB:Q8BGT6 and ensembl:ENSMUSP000000420531600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratcentriole located_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcentriole located_inIEAUniProtKB-SubCell:SL-00461600115GO_REF:0000044UniProtGO_REF:0000044
Micall1Ratcentriole located_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratcentriole located_inISOMICALL1 (Homo sapiens)1624291 PMID:31615969RGDPMID:31615969
Micall1Ratciliary membrane located_inIEAUniProtKB-SubCell:SL-03051600115GO_REF:0000044UniProtGO_REF:0000044
Micall1Ratcilium located_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratcilium located_inISOMICALL1 (Homo sapiens)1624291 PMID:31615969RGDPMID:31615969
Micall1Ratcilium located_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratcytoplasmic side of endosome membrane located_inIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcytoplasmic side of endosome membrane located_inISOMICALL1 (Homo sapiens)1624291 PMID:19864458RGDPMID:19864458
Micall1Ratcytoplasmic side of endosome membrane located_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratearly endosome NOT|located_inISOMICALL1 (Homo sapiens)1624291 PMID:21795389RGDPMID:21795389
Micall1Ratendosome located_inIEAUniProtKB-KW:KW-09671600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratendosome membrane located_inIDA 8554201PMID:23572513UniProt 
Micall1Ratlate endosome located_inISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
1 to 20 of 30 rows

Molecular Function
1 to 17 of 17 rows

  
Object Symbol
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Term
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Evidence
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Reference
Notes
Source
Original Reference(s)
Micall1Ratcytoskeletal anchor activity enablesISOMICALL1 (Homo sapiens)1624291 PMID:31615969RGDPMID:31615969
Micall1Ratcytoskeletal anchor activity enablesIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratcytoskeletal anchor activity enablesISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratidentical protein binding enablesIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratidentical protein binding enablesISOMICALL1 (Homo sapiens)1624291UniProtKB:Q8N3F8 and PMID:23596323RGDPMID:23596323
Micall1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Micall1Ratphosphatidic acid binding enablesISSUniProtKB:Q8N3F81600115GO_REF:0000024UniProtGO_REF:0000024
Micall1Ratphosphatidic acid binding enablesISOMICALL1 (Homo sapiens)1624291 PMID:23596323RGDPMID:23596323
Micall1Ratphosphatidic acid binding enablesIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratprotein binding enablesISOMICALL1 (Homo sapiens)1624291UniProtKB:O02675 more ...RGDPMID:19864458 more ...
Micall1Ratprotein binding enablesISOMicall1 (Mus musculus)1624291UniProtKB:Q6ZQK5 and PMID:23572513RGDPMID:23572513
Micall1Ratprotein-macromolecule adaptor activity enablesISOMicall1 (Mus musculus)1624291 PMID:33972531RGDPMID:33972531
Micall1Ratprotein-macromolecule adaptor activity enablesIEAUniProtKB:Q8BGT6 and ensembl:ENSMUSP000000420531600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratsmall GTPase binding enablesIEAUniProtKB:Q8N3F8 and ensembl:ENSP000002159571600115GO_REF:0000107EnsemblGO_REF:0000107
Micall1Ratsmall GTPase binding enablesISOMicall1 (Mus musculus)1624291UniProtKB:P55258 more ...RGDPMID:18094055 and PMID:23572513
Micall1Ratsmall GTPase binding enablesISOMICALL1 (Homo sapiens)1624291UniProtKB:P51153 more ...RGDPMID:19864458 and PMID:21795389
Micall1Ratsmall GTPase binding enablesIEAUniProtKB:Q8BGT6 and ensembl:ENSMUSP000000420531600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 17 of 17 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rab35 establishes the EHD1-association site by coordinating two distinct effectors during neurite outgrowth. Kobayashi H and Fukuda M, J Cell Sci. 2013 Jun 1;126(Pt 11):2424-35. doi: 10.1242/jcs.117846. Epub 2013 Apr 9.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:18094055   PMID:19864458   PMID:20801876   PMID:21795389   PMID:21951725   PMID:23596323   PMID:25468996  



Micall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,557,192 - 112,587,618 (+)NCBIGRCr8
mRatBN7.27110,676,706 - 110,707,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,676,775 - 110,707,177 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07120,343,900 - 120,375,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,345,180 - 120,375,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,338,867 - 120,369,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,087,550 - 117,113,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,121,779 - 117,147,344 (+)NCBI
Celera7107,009,963 - 107,041,663 (+)NCBICelera
Cytogenetic Map7q34NCBI
MICALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,906,297 - 37,942,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,905,657 - 37,942,822 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,302,304 - 38,338,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,632,292 - 36,667,972 (+)NCBINCBI36Build 36hg18NCBI36
Celera2222,104,063 - 22,139,744 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,268,585 - 21,304,645 (+)NCBIHuRef
CHM1_12238,260,913 - 38,297,232 (+)NCBICHM1_1
T2T-CHM13v2.02238,367,925 - 38,404,449 (+)NCBIT2T-CHM13v2.0
Micall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,992,750 - 79,021,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,993,098 - 79,021,100 (+)EnsemblGRCm39 Ensembl
GRCm381579,108,550 - 79,136,900 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,108,898 - 79,136,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,939,413 - 78,967,330 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1581,221,746 - 81,249,626 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Micall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,264,726 - 24,289,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,264,726 - 24,290,578 (+)NCBIChiLan1.0ChiLan1.0
MICALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,764,800 - 47,807,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,453,247 - 50,488,944 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,821,562 - 18,857,261 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,649,650 - 36,684,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,646,377 - 36,684,644 (+)Ensemblpanpan1.1panPan2
MICALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,715,572 - 26,738,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,717,322 - 26,738,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,667,020 - 26,697,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,503,810 - 27,534,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,486,609 - 27,535,525 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,223,526 - 27,257,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,535,161 - 27,565,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,712,541 - 27,743,258 (-)NCBIUU_Cfam_GSD_1.0
Micall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,190,340 - 10,217,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,204,969 - 3,226,559 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,200,754 - 3,227,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,924,652 - 9,956,946 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,924,648 - 9,956,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,323,793 - 7,358,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,611,226 - 20,645,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,611,598 - 20,644,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,134,791 - 105,171,431 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Micall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,997,338 - 10,020,754 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,997,337 - 10,020,785 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Micall1
126 total Variants

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:94
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000036357
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat

1 to 10 of 33 rows
BI276623  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,703,126 - 110,703,330 (+)MAPPERmRatBN7.2
Rnor_6.07120,371,107 - 120,371,310NCBIRnor6.0
Rnor_5.07120,365,186 - 120,365,389UniSTSRnor5.0
RGSC_v3.47117,113,379 - 117,113,582UniSTSRGSC3.4
Celera7107,037,619 - 107,037,822UniSTS
RH 3.4 Map7839.4UniSTS
Cytogenetic Map7q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000036357   ⟹   ENSRNOP00000034618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,676,775 - 110,707,177 (+)Ensembl
Rnor_6.0 Ensembl7120,345,180 - 120,375,156 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099406   ⟹   ENSRNOP00000077669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,679,242 - 110,707,177 (+)Ensembl
RefSeq Acc Id: NM_001419632   ⟹   NP_001406561
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,557,192 - 112,587,618 (+)NCBI
mRatBN7.27110,676,744 - 110,707,171 (+)NCBI
Protein RefSeqs NP_001406561 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZQL6 (Get FASTA)   NCBI Sequence Viewer  
  EDM15825 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034618
  ENSRNOP00000034618.4
Ensembl Acc Id: ENSRNOP00000034618   ⟸   ENSRNOT00000036357
Ensembl Acc Id: ENSRNOP00000077669   ⟸   ENSRNOT00000099406
RefSeq Acc Id: NP_001406561   ⟸   NM_001419632
- UniProtKB: D3ZQL6 (UniProtKB/Swiss-Prot),   A6HSP7 (UniProtKB/TrEMBL)
bMERB   Calponin-homology (CH)   LIM zinc-binding

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQL6-F1-model_v2 AlphaFold D3ZQL6 1-855 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695481
Promoter ID:EPDNEW_R6001
Type:multiple initiation site
Name:Micall1_1
Description:MICAL-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07120,345,149 - 120,345,209EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-32781 BioCyc
Ensembl Genes ENSRNOG00000026212 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036357 ENTREZGENE
  ENSRNOT00000036357.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
InterPro bMERB_dom UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  F-actin_Monoox_Mical UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
NCBI Gene 362958 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/Swiss-Prot
  MICAL-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam DUF3585 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Micall1 PhenoGen
PROSITE BMERB UniProtKB/Swiss-Prot
  LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000026212 RatGTEx
SMART DUF3585 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
UniProt A0A8I5YBZ3_RAT UniProtKB/TrEMBL
  A6HSP7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQL6 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Micall1  MICAL-like 1  RGD1305415  similar to CG11259-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305415  similar to CG11259-PA   RGD1305415_predicted  similar to CG11259-PA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305415_predicted  similar to CG11259-PA (predicted)  LOC362958_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362958_predicted  similar to CG11259-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL