Micall1 (MICAL like 1) - Rat Genome Database

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Gene: Micall1 (MICAL like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Micall1
Name: MICAL like 1
RGD ID: 12573301
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); phosphatidic acid binding (inferred); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN early endosome (ortholog); endosome membrane (ortholog); recycling endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MICAL-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,190,340 - 10,217,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,204,969 - 3,226,559 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,200,754 - 3,227,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Micall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,190,340 - 10,217,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,204,969 - 3,226,559 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,200,754 - 3,227,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,906,297 - 37,942,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,905,657 - 37,942,822 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,302,304 - 38,338,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,632,292 - 36,667,972 (+)NCBINCBI36Build 36hg18NCBI36
Celera2222,104,063 - 22,139,744 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,268,585 - 21,304,645 (+)NCBIHuRef
CHM1_12238,260,913 - 38,297,232 (+)NCBICHM1_1
T2T-CHM13v2.02238,367,925 - 38,404,449 (+)NCBIT2T-CHM13v2.0
Micall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,992,750 - 79,021,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,993,098 - 79,021,100 (+)EnsemblGRCm39 Ensembl
GRCm381579,108,550 - 79,136,900 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,108,898 - 79,136,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,939,413 - 78,967,330 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1581,221,746 - 81,249,626 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Micall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,557,192 - 112,587,618 (+)NCBIGRCr8
mRatBN7.27110,676,706 - 110,707,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,676,775 - 110,707,177 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07120,343,900 - 120,375,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,345,180 - 120,375,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,338,867 - 120,369,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,087,550 - 117,113,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,121,779 - 117,147,344 (+)NCBI
Celera7107,009,963 - 107,041,663 (+)NCBICelera
Cytogenetic Map7q34NCBI
Micall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,264,726 - 24,289,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,264,726 - 24,290,578 (+)NCBIChiLan1.0ChiLan1.0
MICALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,764,800 - 47,807,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,453,247 - 50,488,944 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,821,562 - 18,857,261 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,649,650 - 36,684,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,646,377 - 36,684,644 (+)Ensemblpanpan1.1panPan2
MICALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,715,572 - 26,738,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,717,322 - 26,738,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,667,020 - 26,697,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,503,810 - 27,534,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,486,609 - 27,535,525 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,223,526 - 27,257,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,535,161 - 27,565,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,712,541 - 27,743,258 (-)NCBIUU_Cfam_GSD_1.0
MICALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,924,652 - 9,956,946 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,924,648 - 9,956,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,323,793 - 7,358,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,611,226 - 20,645,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,611,598 - 20,644,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,134,791 - 105,171,431 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Micall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,997,338 - 10,020,754 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,997,337 - 10,020,785 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021724526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000000968   ⟹   ENSSTOP00000000867
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364923,204,969 - 3,226,559 (-)Ensembl
RefSeq Acc Id: XM_021724526   ⟹   XP_021580201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,190,340 - 10,217,569 (-)NCBI
SpeTri2.0NW_0049364923,200,754 - 3,227,983 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021580201 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000867.3
GenBank Protein KAG3290968 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021580201   ⟸   XM_021724526
- UniProtKB: I3LXP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000867   ⟸   ENSSTOT00000000968

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000967 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000968.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro bMERB_dom UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Micall1 ENTREZGENE
PANTHER ALPHA ACTININ 3 UniProtKB/TrEMBL
  CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE BMERB UniProtKB/TrEMBL
  LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART DUF3585 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
UniProt I3LXP6 ENTREZGENE, UniProtKB/TrEMBL