MICALL1 (MICAL like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: MICALL1 (MICAL like 1) Homo sapiens
Analyze
Symbol: MICALL1
Name: MICAL like 1
RGD ID: 1602200
HGNC Page HGNC
Description: Enables identical protein binding activity; phosphatidic acid binding activity; and small GTPase binding activity. Involved in several processes, including plasma membrane tubulation; protein localization to endosome; and slow endocytic recycling. Located in late endosome and recycling endosome membrane. Is extrinsic component of membrane; INTERACTS WITH 17beta-estradiol; aflatoxin B1; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: DKFZp686M2226; FLJ45921; KIAA1668; MICAL-L1; MICAL-like 1; MICAL-like protein 1; MIRAB13; molecule interacting with Rab13
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2237,905,657 - 37,942,822 (+)EnsemblGRCh38hg38GRCh38
GRCh382237,906,176 - 37,942,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372238,302,304 - 38,338,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,632,292 - 36,667,972 (+)NCBINCBI36hg18NCBI36
Celera2222,104,063 - 22,139,744 (+)NCBI
Cytogenetic Map22q13.1NCBI
HuRef2221,268,585 - 21,304,645 (+)NCBIHuRef
CHM1_12238,260,913 - 38,297,232 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10591208   PMID:11258795   PMID:12058051   PMID:12110185   PMID:12477932   PMID:12788069   PMID:14702039   PMID:15302935   PMID:15324660   PMID:15461802   PMID:15489334   PMID:17353931  
PMID:19041431   PMID:19531213   PMID:19864458   PMID:19945174   PMID:20801876   PMID:21795389   PMID:21873635   PMID:21951725   PMID:22284051   PMID:22456504   PMID:23596323   PMID:24163370  
PMID:24481818   PMID:25248744   PMID:25287187   PMID:25468996   PMID:26496610   PMID:27173435   PMID:27189942   PMID:28514442   PMID:28714518   PMID:28718761   PMID:29053956   PMID:29117863  
PMID:29433439   PMID:29507755   PMID:30021884   PMID:30639242   PMID:30659120   PMID:31615969   PMID:31732153   PMID:31980649   PMID:33334886   PMID:33957083   PMID:33972531   PMID:34079125  


Genomics

Comparative Map Data
MICALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2237,905,657 - 37,942,822 (+)EnsemblGRCh38hg38GRCh38
GRCh382237,906,176 - 37,942,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372238,302,304 - 38,338,829 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,632,292 - 36,667,972 (+)NCBINCBI36hg18NCBI36
Celera2222,104,063 - 22,139,744 (+)NCBI
Cytogenetic Map22q13.1NCBI
HuRef2221,268,585 - 21,304,645 (+)NCBIHuRef
CHM1_12238,260,913 - 38,297,232 (+)NCBICHM1_1
Micall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,992,750 - 79,021,100 (+)NCBIGRCm39mm39
GRCm39 Ensembl1578,993,098 - 79,021,100 (+)Ensembl
GRCm381579,108,550 - 79,136,900 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,108,898 - 79,136,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,939,413 - 78,967,330 (+)NCBIGRCm37mm9NCBIm37
Celera1581,221,746 - 81,249,626 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Micall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27110,676,706 - 110,703,028 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7110,676,775 - 110,707,177 (+)Ensembl
Rnor_6.07120,343,900 - 120,375,151 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,345,180 - 120,375,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,338,867 - 120,369,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,087,550 - 117,113,280 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17117,121,779 - 117,147,344 (+)NCBI
Celera7107,009,963 - 107,041,663 (+)NCBICelera
Cytogenetic Map7q34NCBI
Micall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,264,726 - 24,289,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,264,726 - 24,290,578 (+)NCBIChiLan1.0ChiLan1.0
MICALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12236,649,650 - 36,684,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,646,377 - 36,684,644 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02218,821,562 - 18,857,261 (+)NCBIMhudiblu_PPA_v0panPan3
MICALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,715,572 - 26,738,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,717,322 - 26,738,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,667,020 - 26,697,734 (-)NCBI
ROS_Cfam_1.01027,503,810 - 27,534,504 (-)NCBI
UMICH_Zoey_3.11027,223,526 - 27,257,837 (-)NCBI
UNSW_CanFamBas_1.01027,535,161 - 27,565,860 (-)NCBI
UU_Cfam_GSD_1.01027,712,541 - 27,743,258 (-)NCBI
Micall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,190,340 - 10,217,569 (-)NCBI
SpeTri2.0NW_0049364923,200,754 - 3,227,983 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,924,651 - 9,956,947 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,924,648 - 9,956,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,323,793 - 7,358,650 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,611,226 - 20,645,344 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,611,598 - 20,644,164 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045105,134,791 - 105,171,431 (-)NCBIVero_WHO_p1.0
Micall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247529,997,337 - 10,020,785 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH92865  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372238,338,298 - 38,338,443UniSTSGRCh37
Build 362236,668,244 - 36,668,389RGDNCBI36
Celera2222,140,016 - 22,140,161RGD
Cytogenetic Map22q13.1UniSTS
HuRef2221,304,478 - 21,304,623UniSTS
GeneMap99-GB4 RH Map22128.06UniSTS
RH28521  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372238,336,922 - 38,337,009UniSTSGRCh37
Build 362236,666,868 - 36,666,955RGDNCBI36
Celera2222,138,640 - 22,138,727RGD
Cytogenetic Map22q13.1UniSTS
HuRef2221,303,201 - 21,303,288UniSTS
SHGC-33005  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372238,337,744 - 38,337,876UniSTSGRCh37
Build 362236,667,690 - 36,667,822RGDNCBI36
Celera2222,139,462 - 22,139,594RGD
Cytogenetic Map22q13.1UniSTS
D11S3114  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map10q11.1-q24UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic MapXq13.1-q21.1UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map9p23UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map6p12UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map22q12.3-q13.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map1p32.2-p32.1UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map14q24.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2947
Count of miRNA genes:1022
Interacting mature miRNAs:1259
Transcripts:ENST00000215957, ENST00000402631, ENST00000424008, ENST00000445494, ENST00000454685, ENST00000489812
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2197 1111 798 210 940 66 3194 982 982 239 1248 1520 157 687 1923 4
Low 235 1864 925 414 997 399 1162 1212 2738 179 206 89 16 517 865 1 2
Below cutoff 3 13 3 12 13 1 4 2 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_033386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005261791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005261792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017029026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB051455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ496196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL022311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK000466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA307559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA432878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB997694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB476014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR004306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000215957   ⟹   ENSP00000215957
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,297 - 37,942,822 (+)Ensembl
RefSeq Acc Id: ENST00000402631
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,926,563 - 37,942,009 (+)Ensembl
RefSeq Acc Id: ENST00000424008   ⟹   ENSP00000416766
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,941,187 (+)Ensembl
RefSeq Acc Id: ENST00000445494   ⟹   ENSP00000404543
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000454685   ⟹   ENSP00000406053
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,905,657 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000489812
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,882 - 37,922,036 (+)Ensembl
RefSeq Acc Id: ENST00000679832   ⟹   ENSP00000504906
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000680375   ⟹   ENSP00000504999
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000680501   ⟹   ENSP00000506402
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000680578   ⟹   ENSP00000505762
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: ENST00000680868
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,917,137 - 37,919,655 (+)Ensembl
RefSeq Acc Id: ENST00000681920   ⟹   ENSP00000504884
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2237,906,423 - 37,940,830 (+)Ensembl
RefSeq Acc Id: NM_033386   ⟹   NP_203744
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,297 - 37,942,822 (+)NCBI
GRCh372238,302,155 - 38,338,465 (+)ENTREZGENE
GRCh372238,302,155 - 38,338,465 (+)NCBI
Build 362236,632,292 - 36,667,972 (+)NCBI Archive
Celera2222,104,063 - 22,139,744 (+)RGD
HuRef2221,268,585 - 21,304,645 (+)ENTREZGENE
CHM1_12238,260,913 - 38,297,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005261791   ⟹   XP_005261848
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005261792   ⟹   XP_005261849
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
GRCh372238,302,155 - 38,338,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530471   ⟹   XP_011528773
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530472   ⟹   XP_011528774
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530473   ⟹   XP_011528775
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530475   ⟹   XP_011528777
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,942,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011530476   ⟹   XP_011528778
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,335 - 37,926,936 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017029026   ⟹   XP_016884515
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,176 - 37,942,032 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_203744   ⟸   NM_033386
- UniProtKB: Q8N3F8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005261848   ⟸   XM_005261791
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005261849   ⟸   XM_005261792
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011528773   ⟸   XM_011530471
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011528775   ⟸   XM_011530473
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011528774   ⟸   XM_011530472
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011528777   ⟸   XM_011530475
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011528778   ⟸   XM_011530476
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_016884515   ⟸   XM_017029026
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSP00000416766   ⟸   ENST00000424008
RefSeq Acc Id: ENSP00000215957   ⟸   ENST00000215957
RefSeq Acc Id: ENSP00000406053   ⟸   ENST00000454685
RefSeq Acc Id: ENSP00000404543   ⟸   ENST00000445494
RefSeq Acc Id: ENSP00000506402   ⟸   ENST00000680501
RefSeq Acc Id: ENSP00000504906   ⟸   ENST00000679832
RefSeq Acc Id: ENSP00000504999   ⟸   ENST00000680375
RefSeq Acc Id: ENSP00000504884   ⟸   ENST00000681920
RefSeq Acc Id: ENSP00000505762   ⟸   ENST00000680578
Promoters
RGD ID:6800139
Promoter ID:HG_KWN:42749
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:OTTHUMT00000319546
Position:
Human AssemblyChrPosition (strand)Source
Build 362236,630,461 - 36,630,961 (+)MPROMDB
RGD ID:6800138
Promoter ID:HG_KWN:42750
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000319545,   OTTHUMT00000319547
Position:
Human AssemblyChrPosition (strand)Source
Build 362236,631,511 - 36,633,097 (+)MPROMDB
RGD ID:13604018
Promoter ID:EPDNEW_H28193
Type:initiation region
Name:MICALL1_2
Description:MICAL like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28194  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,905,286 - 37,905,346EPDNEW
RGD ID:13604020
Promoter ID:EPDNEW_H28194
Type:initiation region
Name:MICALL1_1
Description:MICAL like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28193  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382237,906,333 - 37,906,393EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 22q12.3-13.1(chr22:35333993-38900177)x1 copy number loss See cases [RCV000051364] Chr22:35333993..38900177 [GRCh38]
Chr22:35729986..39296182 [GRCh37]
Chr22:34059986..37626128 [NCBI36]
Chr22:22q12.3-13.1
pathogenic
GRCh38/hg38 22q12.3-13.1(chr22:36859030-39236985)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051366]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051366]|See cases [RCV000051366] Chr22:36859030..39236985 [GRCh38]
Chr22:37255072..39632990 [GRCh37]
Chr22:35585018..37962936 [NCBI36]
Chr22:22q12.3-13.1
pathogenic
GRCh38/hg38 22q13.1(chr22:37721777-38886664)x1 copy number loss See cases [RCV000051367] Chr22:37721777..38886664 [GRCh38]
Chr22:38117784..39282669 [GRCh37]
Chr22:36447730..37612615 [NCBI36]
Chr22:22q13.1
pathogenic
GRCh38/hg38 22q12.3-13.33(chr22:33768441-50739977)x3 copy number gain See cases [RCV000051682] Chr22:33768441..50739977 [GRCh38]
Chr22:34164428..51178405 [GRCh37]
Chr22:32494428..49525271 [NCBI36]
Chr22:22q12.3-13.33
pathogenic
GRCh38/hg38 22q12.3-13.1(chr22:36068124-38002382)x3 copy number gain See cases [RCV000051683] Chr22:36068124..38002382 [GRCh38]
Chr22:36464172..38398389 [GRCh37]
Chr22:34794118..36728335 [NCBI36]
Chr22:22q12.3-13.1
pathogenic
GRCh38/hg38 22q12.3-13.33(chr22:37061769-50738932)x3 copy number gain See cases [RCV000051684] Chr22:37061769..50738932 [GRCh38]
Chr22:37457809..51177360 [GRCh37]
Chr22:35787755..49524226 [NCBI36]
Chr22:22q12.3-13.33
pathogenic
GRCh38/hg38 22q13.1-13.2(chr22:37721797-40860953)x3 copy number gain See cases [RCV000051685] Chr22:37721797..40860953 [GRCh38]
Chr22:38117804..41256957 [GRCh37]
Chr22:36447750..39586903 [NCBI36]
Chr22:22q13.1-13.2
pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916608-50739836)x3 copy number gain See cases [RCV000133646] Chr22:16916608..50739836 [GRCh38]
Chr22:17397498..51178264 [GRCh37]
Chr22:15777498..49525130 [NCBI36]
Chr22:22q11.1-13.33
pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916743-50739785)x3 copy number gain See cases [RCV000134730] Chr22:16916743..50739785 [GRCh38]
Chr22:17397633..51178213 [GRCh37]
Chr22:15777633..49525079 [NCBI36]
Chr22:22q11.1-13.33
pathogenic
GRCh38/hg38 22q13.1(chr22:37447222-39103680)x1 copy number loss See cases [RCV000141783] Chr22:37447222..39103680 [GRCh38]
Chr22:37843259..39499685 [GRCh37]
Chr22:36173205..37829631 [NCBI36]
Chr22:22q13.1
pathogenic
GRCh37/hg19 22q12.3-13.1(chr22:37090025-39601950)x3 copy number gain See cases [RCV000446037] Chr22:37090025..39601950 [GRCh37]
Chr22:22q12.3-13.1
uncertain significance
GRCh37/hg19 22q13.1(chr22:38337934-38343443)x3 copy number gain See cases [RCV000446043] Chr22:38337934..38343443 [GRCh37]
Chr22:22q13.1
uncertain significance
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237518)x3 copy number gain See cases [RCV000240091] Chr22:16054691..51237518 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3-13.33(chr22:35728929-51220961)x3 copy number gain See cases [RCV000240469] Chr22:35728929..51220961 [GRCh37]
Chr22:22q12.3-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51220902)x3 copy number gain See cases [RCV000446956] Chr22:16054691..51220902 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q13.1(chr22:38322968-38965458) copy number gain See cases [RCV000447478] Chr22:38322968..38965458 [GRCh37]
Chr22:22q13.1
likely pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237463)x3 copy number gain See cases [RCV000448847] Chr22:16054691..51237463 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q13.1(chr22:37866631-39054815)x1 copy number loss See cases [RCV000511673] Chr22:37866631..39054815 [GRCh37]
Chr22:22q13.1
pathogenic
GRCh37/hg19 22q12.3-13.1(chr22:36877226-38548989)x1 copy number loss See cases [RCV000512008] Chr22:36877226..38548989 [GRCh37]
Chr22:22q12.3-13.1
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838) copy number gain See cases [RCV000510873] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838)x3 copy number gain See cases [RCV000512333] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3-13.1(chr22:35674826-39466442)x3 copy number gain See cases [RCV000512385] Chr22:35674826..39466442 [GRCh37]
Chr22:22q12.3-13.1
likely pathogenic
GRCh38/hg38 22q13.1(chr22:37805546-37983784)x1 copy number loss Waardenburg syndrome type 4C [RCV000721944] Chr22:37805546..37983784 [GRCh38]
Chr22:38201553..38379791 [GRCh37]
Chr22:22q13.1
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888899-51197838)x3 copy number gain not provided [RCV000846344] Chr22:16888899..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054667-51243435)x3 copy number gain not provided [RCV000741689] Chr22:16054667..51243435 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51195728)x3 copy number gain not provided [RCV000741691] Chr22:16114244..51195728 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51211392)x3 copy number gain not provided [RCV000741692] Chr22:16114244..51211392 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.2-13.33(chr22:30654764-51197838)x3 copy number gain not provided [RCV001007181] Chr22:30654764..51197838 [GRCh37]
Chr22:22q12.2-13.33
pathogenic
GRCh37/hg19 22q13.1(chr22:38002218-38973070)x1 copy number loss not provided [RCV001007501] Chr22:38002218..38973070 [GRCh37]
Chr22:22q13.1
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16197005-51224252)x3 copy number gain See cases [RCV001263056] Chr22:16197005..51224252 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q13.1(chr22:38155164-38541997) copy number loss Waardenburg syndrome type 2E [RCV001290182] Chr22:38155164..38541997 [GRCh37]
Chr22:22q13.1
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29804 AgrOrtholog
COSMIC MICALL1 COSMIC
Ensembl Genes ENSG00000100139 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000215957 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000404543 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000406053 UniProtKB/TrEMBL
  ENSP00000416766 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000504884 UniProtKB/TrEMBL
  ENSP00000504906 UniProtKB/TrEMBL
  ENSP00000504999 UniProtKB/TrEMBL
  ENSP00000505762 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000506402 UniProtKB/TrEMBL
Ensembl Transcript ENST00000215957 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000424008 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000445494 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000454685 UniProtKB/TrEMBL
  ENST00000679832 UniProtKB/TrEMBL
  ENST00000680375 UniProtKB/TrEMBL
  ENST00000680501 UniProtKB/TrEMBL
  ENST00000680578 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000681920 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
GTEx ENSG00000100139 GTEx
HGNC ID HGNC:29804 ENTREZGENE
Human Proteome Map MICALL1 Human Proteome Map
InterPro bMERB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  MICAL-L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:85377 UniProtKB/Swiss-Prot
NCBI Gene 85377 ENTREZGENE
OMIM 619563 OMIM
PANTHER PTHR23167:SF44 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot
PharmGKB PA162395891 PharmGKB
PROSITE BMERB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot
UniProt A0A7P0T7Z5_HUMAN UniProtKB/TrEMBL
  A0A7P0T8A6_HUMAN UniProtKB/TrEMBL
  A0A7P0T9P2_HUMAN UniProtKB/TrEMBL
  A0A7P0Z427_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4L3_HUMAN UniProtKB/TrEMBL
  B0QY86_HUMAN UniProtKB/TrEMBL
  B0QY91_HUMAN UniProtKB/TrEMBL
  H0Y6J8_HUMAN UniProtKB/TrEMBL
  MILK1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q5TI16 UniProtKB/Swiss-Prot
  Q7RTP5 UniProtKB/Swiss-Prot
  Q8N3N8 UniProtKB/Swiss-Prot
  Q9BVL9 UniProtKB/Swiss-Prot
  Q9BY92 UniProtKB/Swiss-Prot
  Q9UH43 UniProtKB/Swiss-Prot
  Q9UH44 UniProtKB/Swiss-Prot
  Q9UH45 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 MICALL1  MICAL like 1    MICAL-like 1  Symbol and/or name change 5135510 APPROVED