Cemip (cell migration inducing hyaluronidase 1) - Rat Genome Database

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Gene: Cemip (cell migration inducing hyaluronidase 1) Rattus norvegicus
Analyze
Symbol: Cemip
Name: cell migration inducing hyaluronidase 1
RGD ID: 1305254
Description: Predicted to enable several functions, including clathrin heavy chain binding activity; hyaluronic acid binding activity; and hyalurononglucosaminidase activity. Predicted to be involved in several processes, including hyaluronan catabolic process; positive regulation of protein phosphorylation; and positive regulation of protein targeting to membrane. Predicted to be located in several cellular components, including clathrin-coated vesicle; endoplasmic reticulum; and nucleus. Orthologous to human CEMIP (cell migration inducing hyaluronidase 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell migration inducing hyaluronidase; cell migration inducing protein, hyaluronan binding; cell migration-inducing hyaluronan binding protein; LOC308797; RGD1305254; similar to transmembrane protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,316,052 - 147,471,552 (-)NCBIGRCr8
mRatBN7.21137,906,921 - 138,062,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,908,920 - 138,062,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,069,774 - 146,226,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,069,771 - 146,226,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,998,104 - 147,155,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,202,914 - 140,360,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,281,445 - 140,438,795 (-)NCBI
Celera1129,928,169 - 130,083,350 (-)NCBICelera
Cytogenetic Map1q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CemipRatBloom syndrome  ISOCEMIP (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
CemipRatcolorectal cancer  ISOCEMIP (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
CemipRattyrosinemia type I  ISOCEMIP (Homo sapiens)8554872ClinVar Annotator: match by term: Tyrosinemia type IClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CemipRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of CEMIP mRNACTDPMID:30723492
CemipRat17beta-estradiol decreases expressionISOCEMIP (Homo sapiens)6480464Estradiol results in decreased expression of CEMIP mRNACTDPMID:24758408
CemipRat17beta-estradiol increases expressionISOCEMIP (Homo sapiens)6480464Estradiol results in increased expression of CEMIP mRNACTDPMID:21795739 and PMID:31614463
CemipRat17beta-estradiol multiple interactionsISOCEMIP (Homo sapiens)6480464EGF protein inhibits the reaction [Estradiol results in decreased expression of CEMIP mRNA] and Progesterone inhibits the reaction [Estradiol results in increased expression of CEMIP mRNA]CTDPMID:21795739 and PMID:24758408
CemipRat2,2',4,4',5,5'-hexachlorobiphenyl increases expressionISOCEMIP (Homo sapiens)64804642 more ...CTDPMID:23146750
CemipRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOCemip (Mus musculus)6480464[2 more ...CTDPMID:25510870
CemipRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOCEMIP (Homo sapiens)64804642 more ...CTDPMID:19095052
CemipRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOCEMIP (Homo sapiens)64804642 more ...CTDPMID:23146750
CemipRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOCemip (Mus musculus)6480464[2 more ...CTDPMID:25510870
CemipRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCEMIP (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of CEMIP mRNACTDPMID:20106945 more ...
CemipRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CEMIP mRNACTDPMID:32109520
CemipRat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
CemipRat2-hydroxypropanoic acid decreases expressionISOCEMIP (Homo sapiens)6480464Lactic Acid results in decreased expression of CEMIP mRNACTDPMID:30851411
CemipRat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of CEMIP mRNACTDPMID:28522335
CemipRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOCEMIP (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of CEMIP mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin] results in decreased expression of CEMIP mRNACTDPMID:28628672
CemipRat4,4'-sulfonyldiphenol increases expressionISOCemip (Mus musculus)6480464bisphenol S results in increased expression of CEMIP mRNACTDPMID:30951980
CemipRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of CEMIP mRNACTDPMID:24780913
CemipRataflatoxin B1 increases methylationISOCEMIP (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of CEMIP geneCTDPMID:27153756
CemipRataflatoxin B1 increases expressionISOCEMIP (Homo sapiens)6480464Aflatoxin B1 results in increased expression of CEMIP mRNACTDPMID:32234424
CemipRataldehydo-D-glucose multiple interactionsISOCemip (Mus musculus)6480464fucoxanthin inhibits the reaction [Glucose results in increased expression of CEMIP mRNA]CTDPMID:33448797

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Biological Process
1 to 20 of 23 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
CemipRathyaluronan catabolic process involved_inISSUniProtKB:Q8BI061600115GO_REF:0000024UniProtGO_REF:0000024
CemipRathyaluronan catabolic process involved_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyaluronan catabolic process involved_inIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyaluronan catabolic process involved_inISOCemip (Mus musculus)1624291 PMID:24251095RGDPMID:24251095
CemipRathyaluronan catabolic process involved_inISOCEMIP (Homo sapiens)1624291 PMID:23509262RGDPMID:23509262
CemipRathyaluronan catabolic process involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRathyaluronan metabolic process involved_inISOCemip (Mus musculus)1624291 PMID:28189611 and PMID:28284715RGDPMID:28189611 and PMID:28284715
CemipRathyaluronan metabolic process involved_inIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatpositive regulation of cell migration involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatpositive regulation of cell migration involved_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatpositive regulation of cell migration involved_inISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRatpositive regulation of peptidyl-threonine phosphorylation involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatpositive regulation of peptidyl-threonine phosphorylation involved_inISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRatpositive regulation of protein kinase C activity involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatpositive regulation of protein kinase C activity involved_inISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRatpositive regulation of protein targeting to membrane involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatpositive regulation of protein targeting to membrane involved_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatpositive regulation of protein targeting to membrane involved_inISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRatpositive regulation of release of sequestered calcium ion into cytosol involved_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatpositive regulation of release of sequestered calcium ion into cytosol involved_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
1 to 20 of 26 rows

  
Object Symbol
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Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
CemipRatclathrin-coated endocytic vesicle located_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatclathrin-coated endocytic vesicle located_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatclathrin-coated endocytic vesicle located_inISOCEMIP (Homo sapiens)1624291 PMID:23509262RGDPMID:23509262
CemipRatclathrin-coated vesicle membrane located_inISSUniProtKB:Q8BI061600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatclathrin-coated vesicle membrane located_inIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatclathrin-coated vesicle membrane located_inISOCemip (Mus musculus)1624291 PMID:24251095RGDPMID:24251095
CemipRatcytoplasm located_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatcytoplasm located_inISOCemip (Mus musculus)1624291 PMID:18448257RGDPMID:18448257
CemipRatcytoplasm located_inISOCEMIP (Homo sapiens)1624291 PMID:14577002 more ...RGDPMID:14577002 more ...
CemipRatcytoplasm located_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatcytoplasm located_inIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatendoplasmic reticulum located_inISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRatendoplasmic reticulum located_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatendoplasmic reticulum located_inISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatendoplasmic reticulum located_inISOCEMIP (Homo sapiens) and UniProtKB:Q8WUJ3-11624291 RGDGO_REF:0000052
CemipRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
CemipRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
CemipRatfibrillar center located_inISOCEMIP (Homo sapiens) and UniProtKB:Q8WUJ3-11624291 RGDGO_REF:0000052
CemipRatfibrillar center located_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatnuclear membrane located_inIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
1 to 20 of 25 rows

  
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Original Reference(s)
CemipRatcarbohydrate binding enablesIEAUniRule:UR0019229811600115GO_REF:0000104UniProtGO_REF:0000104
CemipRatcarbohydrate binding enablesIEAUniProtKB-KW:KW-04301600115GO_REF:0000043UniProtGO_REF:0000043
CemipRatclathrin heavy chain binding enablesISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatclathrin heavy chain binding enablesIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatclathrin heavy chain binding enablesISOCEMIP (Homo sapiens)1624291 PMID:23509262RGDPMID:23509262
CemipRatER retention sequence binding enablesISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRatER retention sequence binding enablesIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRatER retention sequence binding enablesISOCEMIP (Homo sapiens)1624291 PMID:23990668RGDPMID:23990668
CemipRathyaluronic acid binding enablesISOCEMIP (Homo sapiens)1624291 PMID:23509262RGDPMID:23509262
CemipRathyaluronic acid binding enablesIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyaluronic acid binding enablesISOCemip (Mus musculus)1624291 PMID:24251095RGDPMID:24251095
CemipRathyaluronic acid binding enablesIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyaluronic acid binding enablesISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRathyaluronic acid binding enablesISSUniProtKB:Q8BI061600115GO_REF:0000024UniProtGO_REF:0000024
CemipRathyalurononglucosaminidase activity enablesISSUniProtKB:Q8WUJ31600115GO_REF:0000024UniProtGO_REF:0000024
CemipRathyalurononglucosaminidase activity enablesIEAUniProtKB:Q8WUJ3 and ensembl:ENSP000003781771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyalurononglucosaminidase activity enablesIEAUniProtKB:Q8BI06 and ensembl:ENSMUSP000000632771600115GO_REF:0000107EnsemblGO_REF:0000107
CemipRathyalurononglucosaminidase activity enablesIEAEC:3.2.1.351600115GO_REF:0000003UniProtGO_REF:0000003
CemipRathyalurononglucosaminidase activity enablesIEAARBA:ARBA000342111600115GO_REF:0000117UniProtGO_REF:0000117
CemipRathyalurononglucosaminidase activity enablesISOCEMIP (Homo sapiens)1624291 PMID:23509262RGDPMID:23509262
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#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:14577002   PMID:16157444   PMID:18448257   PMID:23509262   PMID:23990668   PMID:24251095  



Cemip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,316,052 - 147,471,552 (-)NCBIGRCr8
mRatBN7.21137,906,921 - 138,062,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,908,920 - 138,062,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,069,774 - 146,226,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,069,771 - 146,226,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,998,104 - 147,155,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,202,914 - 140,360,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,281,445 - 140,438,795 (-)NCBI
Celera1129,928,169 - 130,083,350 (-)NCBICelera
Cytogenetic Map1q31NCBI
CEMIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381580,779,370 - 80,951,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1580,779,343 - 80,951,776 (+)EnsemblGRCh38hg38GRCh38
GRCh371581,071,711 - 81,244,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361578,858,767 - 79,031,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 341578,858,766 - 79,031,054NCBI
Celera1558,009,220 - 58,181,481 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1557,829,943 - 58,002,338 (+)NCBIHuRef
CHM1_11581,189,630 - 81,361,944 (+)NCBICHM1_1
T2T-CHM13v2.01578,642,698 - 78,815,415 (+)NCBIT2T-CHM13v2.0
Cemip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39783,582,065 - 83,735,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl783,582,065 - 83,735,710 (-)EnsemblGRCm39 Ensembl
GRCm38783,932,857 - 84,086,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl783,932,857 - 84,086,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37791,081,367 - 91,235,015 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36783,810,968 - 83,962,687 (-)NCBIMGSCv36mm8
Celera781,339,035 - 81,491,135 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.35NCBI
Cemip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541611,613,316 - 11,699,925 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541611,562,047 - 11,699,925 (+)NCBIChiLan1.0ChiLan1.0
CEMIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21670,045,649 - 70,218,184 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11574,207,909 - 74,380,096 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,760,481 - 59,932,698 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11578,716,732 - 78,888,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,810,600 - 78,888,723 (+)Ensemblpanpan1.1panPan2
CEMIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,726,605 - 56,786,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,726,493 - 56,876,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,375,572 - 59,514,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,148,792 - 57,287,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,148,811 - 57,287,729 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,659,442 - 56,797,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,865,425 - 57,003,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,204,384 - 57,343,326 (-)NCBIUU_Cfam_GSD_1.0
Cemip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640126,443,576 - 126,612,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648319,724,605 - 19,799,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648319,721,256 - 19,799,371 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEMIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl749,622,539 - 49,792,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1749,622,534 - 49,792,547 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2755,355,396 - 55,375,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEMIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1262,440,075 - 2,611,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl262,438,706 - 2,519,563 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048139,275,264 - 139,447,688 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cemip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476820,894,253 - 20,960,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476820,895,603 - 21,031,231 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cemip
582 total Variants

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:53
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000036343
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat

1 to 10 of 64 rows
AA800359  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,906,964 - 137,907,117 (+)MAPPERmRatBN7.2
Rnor_6.01146,069,818 - 146,069,970NCBIRnor6.0
Rnor_5.01146,998,148 - 146,998,300UniSTSRnor5.0
RGSC_v3.41140,200,398 - 140,200,550UniSTSRGSC3.4
Celera1129,928,213 - 129,928,365UniSTS
RH 3.4 Map11100.8UniSTS
Cytogenetic Map1q31UniSTS
AU049221  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25130,432,062 - 130,433,042 (+)MAPPERmRatBN7.2
mRatBN7.21138,004,755 - 138,004,977 (+)MAPPERmRatBN7.2
Rnor_6.01146,168,209 - 146,168,430NCBIRnor6.0
Rnor_6.05135,822,807 - 135,823,785NCBIRnor6.0
Rnor_5.01147,096,944 - 147,097,165UniSTSRnor5.0
Rnor_5.05139,618,171 - 139,619,149UniSTSRnor5.0
RGSC_v3.45137,264,077 - 137,265,055UniSTSRGSC3.4
Celera5128,958,684 - 128,959,662UniSTS
Celera1130,025,714 - 130,025,937UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map1q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 49 113 91 90 59 25 59 6 216 95 93 45 60 31



Ensembl Acc Id: ENSRNOT00000036343   ⟹   ENSRNOP00000037364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1137,908,920 - 138,062,415 (-)Ensembl
Rnor_6.0 Ensembl1146,069,771 - 146,226,462 (-)Ensembl
RefSeq Acc Id: NM_001427855   ⟹   NP_001414784
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,316,052 - 147,471,483 (-)NCBI
RefSeq Acc Id: XM_063262727   ⟹   XP_063118797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,316,052 - 147,471,552 (-)NCBI
RefSeq Acc Id: XM_063262728   ⟹   XP_063118798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,316,052 - 147,471,552 (-)NCBI
Protein RefSeqs NP_001414784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118797 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037364
  ENSRNOP00000037364.6
  ENSRNOP00000099632
Ensembl Acc Id: ENSRNOP00000037364   ⟸   ENSRNOT00000036343
RefSeq Acc Id: XP_063118798   ⟸   XM_063262728
- Peptide Label: isoform X1
- UniProtKB: D3ZWI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118797   ⟸   XM_063262727
- Peptide Label: isoform X1
- UniProtKB: D3ZWI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414784   ⟸   NM_001427855
- Peptide Label: precursor
- UniProtKB: D3ZWI0 (UniProtKB/TrEMBL)
G8

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWI0-F1-model_v2 AlphaFold D3ZWI0 1-1427 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58657 BioCyc
Ensembl Genes ENSRNOG00000012442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036343 ENTREZGENE
  ENSRNOT00000036343.6 UniProtKB/TrEMBL
  ENSRNOT00000135771 ENTREZGENE
InterPro G8_domain UniProtKB/TrEMBL
  HA_metabolism_regulator UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/TrEMBL
  Pectin_lyase_fold/virulence UniProtKB/TrEMBL
  TMEM2_PANDER-like UniProtKB/TrEMBL
  WxxW_domain UniProtKB/TrEMBL
NCBI Gene 308797 ENTREZGENE
PANTHER CELL MIGRATION-INDUCING AND HYALURONAN-BINDING PROTEIN UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 2-RELATED UniProtKB/TrEMBL
Pfam ILEI UniProtKB/TrEMBL
  Mucin2_WxxW UniProtKB/TrEMBL
  PF10162 UniProtKB/TrEMBL
PhenoGen Cemip PhenoGen
PROSITE GG_LECTIN UniProtKB/TrEMBL
  PS51484 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012442 RatGTEx
SMART SM01225 UniProtKB/TrEMBL
Superfamily-SCOP Pectin_lyas_like UniProtKB/TrEMBL
UniProt D3ZWI0 ENTREZGENE, UniProtKB/TrEMBL
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-29 Cemip  cell migration inducing hyaluronidase 1  Cemip  cell migration inducing hyaluronidase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-16 Cemip  cell migration inducing hyaluronidase  Cemip  cell migration-inducing hyaluronan binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-04 Cemip  cell migration-inducing hyaluronan binding protein  Cemip  cell migration inducing protein, hyaluronan binding  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-02-13 Cemip  cell migration inducing protein, hyaluronan binding  RGD1305254  similar to transmembrane protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1305254  similar to transmembrane protein 2   RGD1305254_predicted  similar to transmembrane protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305254_predicted  similar to transmembrane protein 2 (predicted)  LOC308797_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308797_predicted  similar to transmembrane protein 2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL