CEMIP (cell migration inducing hyaluronidase 1) - Rat Genome Database

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Gene: CEMIP (cell migration inducing hyaluronidase 1) Canis lupus familiaris
Analyze
Symbol: CEMIP
Name: cell migration inducing hyaluronidase 1
RGD ID: 12061187
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); clathrin heavy chain binding (inferred); ER retention sequence binding (inferred); INVOLVED IN hyaluronan catabolic process (inferred); hyaluronan metabolic process (inferred); positive regulation of cell migration (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN clathrin-coated endocytic vesicle (inferred); clathrin-coated vesicle membrane (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA1199
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,726,605 - 56,786,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,726,493 - 56,876,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,375,572 - 59,514,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,148,792 - 57,287,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,148,811 - 57,287,729 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,659,442 - 56,797,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,865,425 - 57,003,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,204,384 - 57,343,326 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CEMIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,726,605 - 56,786,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,726,493 - 56,876,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,375,572 - 59,514,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,148,792 - 57,287,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,148,811 - 57,287,729 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,659,442 - 56,797,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,865,425 - 57,003,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,204,384 - 57,343,326 (-)NCBIUU_Cfam_GSD_1.0
CEMIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381580,779,370 - 80,951,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1580,779,343 - 80,951,776 (+)EnsemblGRCh38hg38GRCh38
GRCh371581,071,711 - 81,244,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361578,858,767 - 79,031,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 341578,858,766 - 79,031,054NCBI
Celera1558,009,220 - 58,181,481 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1557,829,943 - 58,002,338 (+)NCBIHuRef
CHM1_11581,189,630 - 81,361,944 (+)NCBICHM1_1
T2T-CHM13v2.01578,642,698 - 78,815,415 (+)NCBIT2T-CHM13v2.0
Cemip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39783,582,065 - 83,735,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl783,582,065 - 83,735,710 (-)EnsemblGRCm39 Ensembl
GRCm38783,932,857 - 84,086,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl783,932,857 - 84,086,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37791,081,367 - 91,235,015 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36783,810,968 - 83,962,687 (-)NCBIMGSCv36mm8
Celera781,339,035 - 81,491,135 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.35NCBI
Cemip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,316,052 - 147,471,552 (-)NCBIGRCr8
mRatBN7.21137,906,921 - 138,062,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,908,920 - 138,062,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,069,774 - 146,226,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,069,771 - 146,226,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,998,104 - 147,155,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,202,914 - 140,360,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,281,445 - 140,438,795 (-)NCBI
Celera1129,928,169 - 130,083,350 (-)NCBICelera
Cytogenetic Map1q31NCBI
Cemip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541611,613,316 - 11,699,925 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541611,562,047 - 11,699,925 (+)NCBIChiLan1.0ChiLan1.0
CEMIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21670,045,649 - 70,218,184 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11574,207,909 - 74,380,096 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,760,481 - 59,932,698 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11578,716,732 - 78,888,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,810,600 - 78,888,723 (+)Ensemblpanpan1.1panPan2
Cemip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640126,443,576 - 126,612,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648319,724,605 - 19,799,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648319,721,256 - 19,799,371 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEMIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl749,622,539 - 49,792,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1749,622,534 - 49,792,547 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2755,355,396 - 55,375,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEMIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1262,440,075 - 2,611,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl262,438,706 - 2,519,563 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048139,275,264 - 139,447,688 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cemip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476820,894,253 - 20,960,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476820,895,603 - 21,031,231 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CEMIP
980 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 1
Medium 5 5 22 6 6 6 6 6 12 7 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022417003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038476786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_545884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000022000   ⟹   ENSCAFP00000020430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl356,728,184 - 56,876,026 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065721   ⟹   ENSCAFP00000062532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl356,726,493 - 56,861,885 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073972   ⟹   ENSCAFP00000049782
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl356,730,166 - 56,789,410 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082833   ⟹   ENSCAFP00000064131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl356,728,184 - 56,786,116 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845008723   ⟹   ENSCAFP00845006877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl357,148,811 - 57,287,729 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845008743   ⟹   ENSCAFP00845006892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl357,148,811 - 57,287,729 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845008779   ⟹   ENSCAFP00845006919
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl357,148,811 - 57,226,244 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845008810   ⟹   ENSCAFP00845006946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl357,148,811 - 57,226,244 (-)Ensembl
RefSeq Acc Id: XM_038472057   ⟹   XP_038327985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1356,659,442 - 56,797,922 (-)NCBI
RefSeq Acc Id: XM_038472058   ⟹   XP_038327986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1356,659,442 - 56,797,922 (-)NCBI
RefSeq Acc Id: XM_038476780   ⟹   XP_038332708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha359,375,572 - 59,514,042 (-)NCBI
RefSeq Acc Id: XM_038476786   ⟹   XP_038332714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha359,375,572 - 59,514,042 (-)NCBI
RefSeq Acc Id: XM_038532995   ⟹   XP_038388923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0357,204,384 - 57,343,326 (-)NCBI
RefSeq Acc Id: XM_038532996   ⟹   XP_038388924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0357,204,384 - 57,343,326 (-)NCBI
RefSeq Acc Id: XM_038597326   ⟹   XP_038453254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0356,865,425 - 57,003,939 (-)NCBI
RefSeq Acc Id: XM_038597327   ⟹   XP_038453255
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0356,865,425 - 57,003,939 (-)NCBI
RefSeq Acc Id: XM_038661502   ⟹   XP_038517430
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0357,148,792 - 57,287,625 (-)NCBI
RefSeq Acc Id: XM_038661503   ⟹   XP_038517431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0357,148,792 - 57,287,625 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000049782   ⟸   ENSCAFT00000073972
RefSeq Acc Id: ENSCAFP00000064131   ⟸   ENSCAFT00000082833
RefSeq Acc Id: ENSCAFP00000062532   ⟸   ENSCAFT00000065721
RefSeq Acc Id: ENSCAFP00000020430   ⟸   ENSCAFT00000022000
RefSeq Acc Id: XP_038327986   ⟸   XM_038472058
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038327985   ⟸   XM_038472057
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453255   ⟸   XM_038597327
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038453254   ⟸   XM_038597326
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038517431   ⟸   XM_038661503
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517430   ⟸   XM_038661502
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q215 (UniProtKB/TrEMBL),   A0A8I3MPD2 (UniProtKB/TrEMBL),   A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038332714   ⟸   XM_038476786
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038332708   ⟸   XM_038476780
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q215 (UniProtKB/TrEMBL),   A0A8I3MPD2 (UniProtKB/TrEMBL),   A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388924   ⟸   XM_038532996
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388923   ⟸   XM_038532995
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYT1 (UniProtKB/TrEMBL),   A0A8P0NFT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845006946   ⟸   ENSCAFT00845008810
RefSeq Acc Id: ENSCAFP00845006892   ⟸   ENSCAFT00845008743
RefSeq Acc Id: ENSCAFP00845006877   ⟸   ENSCAFT00845008723
RefSeq Acc Id: ENSCAFP00845006919   ⟸   ENSCAFT00845008779
Protein Domains
G8


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013863 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040000471 UniProtKB/TrEMBL
  ENSCAFG00845004875 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022000.5 UniProtKB/TrEMBL
  ENSCAFT00000082833.2 UniProtKB/TrEMBL
  ENSCAFT00040000818.1 UniProtKB/TrEMBL
  ENSCAFT00845008723 ENTREZGENE
  ENSCAFT00845008723.1 UniProtKB/TrEMBL
  ENSCAFT00845008743 ENTREZGENE
  ENSCAFT00845008743.1 UniProtKB/TrEMBL
  ENSCAFT00845008779.1 UniProtKB/TrEMBL
  ENSCAFT00845008810.1 UniProtKB/TrEMBL
InterPro G8_domain UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/TrEMBL
  Pectin_lyase_fold/virulence UniProtKB/TrEMBL
  TMEM2_PANDER-like UniProtKB/TrEMBL
  WxxW_domain UniProtKB/TrEMBL
NCBI Gene CEMIP ENTREZGENE
PANTHER CELL MIGRATION-INDUCING AND HYALURONAN-BINDING PROTEIN UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 2-RELATED UniProtKB/TrEMBL
Pfam ILEI UniProtKB/TrEMBL
  Mucin2_WxxW UniProtKB/TrEMBL
  PF10162 UniProtKB/TrEMBL
PROSITE PS51484 UniProtKB/TrEMBL
SMART SM01225 UniProtKB/TrEMBL
Superfamily-SCOP SSF51126 UniProtKB/TrEMBL
UniProt A0A8C0Q215 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MPD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MRT3_CANLF UniProtKB/TrEMBL
  A0A8I3MXZ0_CANLF UniProtKB/TrEMBL
  A0A8I3MYT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NFT5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39099 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-06 CEMIP  cell migration inducing hyaluronidase 1    cell migration inducing hyaluronan binding protein  Symbol and/or name change 5135510 APPROVED