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Gene: Fnta (farnesyltransferase, CAAX box, subunit alpha) Chinchilla lanigera

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Symbol:

Fnta

Name:

farnesyltransferase, CAAX box, subunit alpha

RGD ID:

8833897

Description:

ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); alpha-tubulin binding (ortholog); CAAX-protein geranylgeranyltransferase activity (ortholog); INVOLVED IN enzyme-linked receptor protein signaling pathway (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of cell cycle (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog); IMMUNODEFICIENCY 15 (ortholog); FOUND IN CAAX-protein geranylgeranyltransferase complex (ortholog); microtubule associated complex (ortholog); protein farnesyltransferase complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

farnesyltransferase, CAAX box, alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	13,260,545 - 13,294,025 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	13,260,825 - 13,294,025 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fnta	Chinchilla	congenital muscular dystrophy-dystroglycanopathy type A12		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 12	ClinVar	PMID:28492532
Fnta	Chinchilla	Idiopathic Basal Ganglia Calcification 1		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic basal ganglia calcification 1	ClinVar	PMID:27726124
Fnta	Chinchilla	IMMUNODEFICIENCY 15		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency 15	ClinVar	PMID:28492532
Fnta	Chinchilla	immunodeficiency 15B		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: IMMUNODEFICIENCY 15B	ClinVar	PMID:28492532
Fnta	Chinchilla	mucopolysaccharidosis type IIIC		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Mucopolysaccharidosis and MPS-III-C	ClinVar	PMID:28492532
Fnta	Chinchilla	torsion dystonia 6		ISO	FNTA (Homo sapiens)	8554872	ClinVar Annotator: match by term: Torsion dystonia 6	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fnta	Chinchilla	enzyme-linked receptor protein signaling pathway	involved_in	ISO	MGI:103581	9068941	PMID:8653787	MGI	PMID:8653787
Fnta	Chinchilla	enzyme-linked receptor protein signaling pathway	involved_in	ISO	Fnta (Mus musculus)	9068941	PMID:18848351 and PMID:18957220	MGI	PMID:18848351 and PMID:18957220
Fnta	Chinchilla	enzyme-linked receptor protein signaling pathway	involved_in	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	MGI	PMID:14622576
Fnta	Chinchilla	negative regulation of apoptotic process		ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:11313965 and REF_RGD_ID:2302977
Fnta	Chinchilla	positive regulation of cell cycle		ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:10544242 and REF_RGD_ID:2302976
Fnta	Chinchilla	positive regulation of cell population proliferation		ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:10544242 and REF_RGD_ID:2302976
Fnta	Chinchilla	positive regulation of Rac protein signal transduction	involved_in	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	MGI	PMID:14622576
Fnta	Chinchilla	positive regulation of skeletal muscle acetylcholine-gated channel clustering	involved_in	ISO	MGI:103581	9068941	PMID:8653787	MGI	PMID:8653787
Fnta	Chinchilla	positive regulation of skeletal muscle acetylcholine-gated channel clustering	involved_in	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	MGI	PMID:14622576
Fnta	Chinchilla	positive regulation of skeletal muscle acetylcholine-gated channel clustering	involved_in	ISO	Fnta (Mus musculus)	9068941	PMID:18848351 and PMID:18957220	MGI	PMID:18848351 and PMID:18957220
Fnta	Chinchilla	protein farnesylation	involved_in	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176
Fnta	Chinchilla	protein geranylgeranylation	involved_in	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176
Fnta	Chinchilla	Rac protein signal transduction	acts_upstream_of_or_within	ISO	MGI:104683	9068941	PMID:14622576	MGI	PMID:14622576
Fnta	Chinchilla	regulation of microtubule-based movement	involved_in	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fnta	Chinchilla	CAAX-protein geranylgeranyltransferase complex		ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:15248757 and REF_RGD_ID:2302978
Fnta	Chinchilla	CAAX-protein geranylgeranyltransferase complex	part_of	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176
Fnta	Chinchilla	CAAX-protein geranylgeranyltransferase complex	part_of	ISO	FNTA (Homo sapiens)	9068941	PMID:8106351	ComplexPortal	PMID:8106351
Fnta	Chinchilla	microtubule associated complex	part_of	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	protein farnesyltransferase complex	part_of	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fnta	Chinchilla	acetyltransferase activator activity	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	alpha-tubulin binding	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	CAAX-protein geranylgeranyltransferase activity	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:8089111 and REF_RGD_ID:2302973
Fnta	Chinchilla	enzyme binding	enables	ISO	UniProtKB:Q9UBN7	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	heterocyclic compound binding	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941	anticancer clinical candidate L-778 and 123	RGD	PMID:15248757 and REF_RGD_ID:2302978
Fnta	Chinchilla	microtubule binding	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	molecular adaptor activity	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:11687658	DisProt	PMID:11687658
Fnta	Chinchilla	peptide binding	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:9705207 and REF_RGD_ID:2302975
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:12657282	IntAct	PMID:12657282 and REF_RGD_ID:8554767
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P49356	9068941	PMID:11687658 more ...	IntAct	PMID:11687658 more ...
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:O00189 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:12667062	IntAct	PMID:12667062 and REF_RGD_ID:8554159
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P01116-2	9068941	PMID:10673434	IntAct	PMID:10673434 and REF_RGD_ID:11041072
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:9065406	IntAct	PMID:9065406 and REF_RGD_ID:13432295
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P53610	9068941	PMID:15248757	IntAct	PMID:15248757 and REF_RGD_ID:2302978
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q63604	9068941	PMID:18957540	IntAct	PMID:18957540 and REF_RGD_ID:2302981
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P53610	9068941	PMID:14609943	IntAct	PMID:14609943 and REF_RGD_ID:8554040
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P49356 and UniProtKB:P53609	9068941	PMID:24981860 and PMID:33961781	IntAct	PMID:24981860 and PMID:33961781
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:12699757	IntAct	PMID:12699757 and REF_RGD_ID:8554635
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P01116-2	9068941	PMID:15451670	IntAct	PMID:15451670 and REF_RGD_ID:8553417
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:12657284	IntAct	PMID:12657284 and REF_RGD_ID:8554772
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:10377218	IntAct	PMID:10377218 and REF_RGD_ID:8553653
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:12657283	IntAct	PMID:12657283 and REF_RGD_ID:8554769
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:10673434	IntAct	PMID:10673434 and REF_RGD_ID:11041072
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P53610	9068941	PMID:15451670	IntAct	PMID:15451670 and REF_RGD_ID:8553417
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:15451670	IntAct	PMID:15451670 and REF_RGD_ID:8553417
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:P53610	9068941	PMID:18957540	IntAct	PMID:18957540 and REF_RGD_ID:2302981
Fnta	Chinchilla	protein binding		ISO	Pggt1b (Rattus norvegicus)	9068941		RGD	PMID:15248757 and REF_RGD_ID:2302978
Fnta	Chinchilla	protein binding		ISO	Ntrk2 (Rattus norvegicus)	9068941		RGD	PMID:18957540 and REF_RGD_ID:2302981
Fnta	Chinchilla	protein binding	enables	ISO	UniProtKB:Q02293	9068941	PMID:15170324	IntAct	PMID:15170324 and REF_RGD_ID:8553865
Fnta	Chinchilla	protein farnesyltransferase activity		ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:1763049 and REF_RGD_ID:728420
Fnta	Chinchilla	protein farnesyltransferase activity	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176
Fnta	Chinchilla	protein farnesyltransferase activity	enables	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	UniProt	PMID:14622576
Fnta	Chinchilla	protein farnesyltransferase activity	contributes_to	ISO	FNTA (Homo sapiens)	9068941	PMID:19228685	BHF-UCL	PMID:19228685
Fnta	Chinchilla	protein farnesyltransferase activity	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:8089111 and REF_RGD_ID:2302973
Fnta	Chinchilla	protein geranylgeranyltransferase activity	enables	ISO	FNTA (Homo sapiens)	9068941	PMID:16893176	UniProt	PMID:16893176
Fnta	Chinchilla	protein geranylgeranyltransferase activity	enables	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	MGI	PMID:14622576
Fnta	Chinchilla	Rab geranylgeranyltransferase activity	enables	ISO	Fnta (Mus musculus)	9068941	PMID:14622576	UniProt	PMID:14622576
Fnta	Chinchilla	receptor tyrosine kinase binding	enables	ISO	UniProtKB:Q61006	9068941	PMID:14622576	UniProt	PMID:14622576
Fnta	Chinchilla	small molecule binding	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:15248757 and REF_RGD_ID:2302978
Fnta	Chinchilla	zinc ion binding	contributes_to	ISO	Fnta (Rattus norvegicus)	9068941		RGD	PMID:15248757 and REF_RGD_ID:2302978

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:30032202

Fnta
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	13,260,545 - 13,294,025 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955457	13,260,825 - 13,294,025 (+)	NCBI	ChiLan1.0	ChiLan1.0

FNTA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	43,056,323 - 43,085,785 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	43,034,194 - 43,085,788 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	42,911,466 - 42,940,928 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	43,030,599 - 43,060,088 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	43,030,640 - 43,060,080	NCBI
Celera	8	41,859,884 - 41,889,630 (+)	NCBI		Celera
Cytogenetic Map	8	p11.21	NCBI
HuRef	8	41,434,064 - 41,463,781 (+)	NCBI		HuRef
CHM1_1	8	42,958,364 - 42,987,853 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	43,325,268 - 43,354,718 (+)	NCBI		T2T-CHM13v2.0

Fnta
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	26,488,716 - 26,505,638 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	26,488,750 - 26,505,678 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	25,998,688 - 26,015,610 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	25,998,722 - 26,015,650 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	27,109,194 - 27,126,073 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	27,464,267 - 27,481,146 (-)	NCBI		MGSCv36	mm8
Celera	8	27,468,460 - 27,485,887 (-)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	14.27	NCBI

Fnta
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	72,767,864 - 72,786,193 (+)	NCBI		GRCr8
mRatBN7.2	16	66,065,131 - 66,083,460 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	66,065,132 - 66,083,460 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	71,343,827 - 71,362,199 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	74,750,156 - 74,768,528 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	69,990,195 - 70,008,625 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	70,834,957 - 70,854,724 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	70,834,957 - 70,854,724 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	70,499,605 - 70,519,062 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	70,440,340 - 70,458,433 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	70,440,604 - 70,458,698 (+)	NCBI
Celera	16	63,976,260 - 63,994,463 (+)	NCBI		Celera
RH 3.4 Map	16	622.7	RGD
Cytogenetic Map	16	q12.4	NCBI

FNTA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	61,512,173 - 61,542,875 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	37,229,091 - 37,258,862 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	42,303,987 - 42,333,743 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	39,744,142 - 39,774,039 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	39,743,768 - 39,774,031 (+)	Ensembl	panpan1.1		panPan2

FNTA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	22,739,070 - 22,767,942 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	22,739,079 - 22,767,914 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	23,244,269 - 23,273,147 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	24,491,021 - 24,519,909 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	24,491,022 - 24,652,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	22,859,185 - 22,888,061 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	23,424,042 - 23,452,916 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	23,475,354 - 23,504,242 (-)	NCBI		UU_Cfam_GSD_1.0

Fnta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	45,764,313 - 45,791,302 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936570	362,655 - 389,649 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FNTA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	11,928,358 - 11,951,684 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	11,928,327 - 11,953,139 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FNTA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	41,057,798 - 41,088,210 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	41,057,603 - 41,087,705 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	681,570 - 712,699 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005397076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01047040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01047752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000019197 ⟹ ENSCLAP00000019012

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955457	13,260,545 - 13,294,025 (+)	Ensembl

RefSeq Acc Id:

XM_005397076 ⟹ XP_005397133

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955457	13,260,825 - 13,294,025 (+)	NCBI

Sequence:

show sequence

TCGGGCGCCGCGGGCCAGGGGGCGCGGGCGAGGCCGCGGGGGCGTGGCCTCCGCGCTGCCTGCGCTGCGGACTAGGCGAGATGGCGGCCACCGAGGGGGTCGGGGAGCCTGCGCAGGGCGGCGAGCCC
GGTCAGCCGGAGCAGCCTCCGCCACAGCCTCACCCCCCACCGCCCCAGCAGCCACAGGAGGACGAGATGGCAGCTGAGGCCGGGGAAGCCGTGCCGTCCCCTATGGACGACGGGTTCCTGAGCCTGGA
CTCGCCCACCTACGTCCTGTACAGGGACAGAGCAGAATGGGCTGATATAGATCCAGTGCCACAGAATGATGGTCCAAACCCAGTGGTGCAGATCATCTATAGTGAAAAATTCCGAGATGTTTATGATT
ATTTCCGAGCTGTTCTGCAGCGTGATGAAAGAAGTGAGCGAGCCTTGCAGCTCACTCGGGATGCCATTGAGTTAAATGCAGCCAATTACACAGTGTGGCATTTCCGGAGAGTTCTCTTACGGTCCCTT
CAAAAGGATCTTCATGAAGAAATGAACTACATCACTACGATAATTGAGGAACAGCCCAAAAACTATCAAGTTTGGCACCATAGGCGTGTATTAGTGGAATGGCTGAAGGACCCATCCCAGGAGCTTGA
GTTTATTGCTGATATTCTTAATCAGGATGCAAAGAATTACCATGCCTGGCAGCACCGACAGTGGGTCATTCAGGAATTTAGACTTTGGGATAATGAATTGCAGTATGTAGACCAACTTCTCAAAGAGG
ATGTGAGAAATAACTCTGCGTGGAACCAAAGATACTTCGTCATTTCTAACACTACTGGCTACAATGGTCATGCTGTATTAGAGAGAGAAGTCCAGTACACTCTGGAAATGATAAAACTTGTACCACAT
AATGAAAGTGCATGGAATTACTTGAAAGGGATTTTGCAGGATCGTGGTCTTTCCAAATACCCCAACTTACTAAGTCAATTACTTGATTTACAACCAAGTCATAGTTCTCCCTACCTAATTGCCTTTCT
TGTGGATGTCTATGAAGACATGCTAGAAAACCAGTGTGACAACAAGGAAGACATTCTTAATAAAGCATTAGAGTTATGTGAGATCCTAGCTAAAGAAAAGGACACCATAAGAAAGGAATATTGGAGAT
ATATTGGAAGATCTCTTCAAAGCAAACACAGAGAAAGTGACCTACCAACAAATGCACAGCAATAACGCCATCTGGAAGAACTTGATGGAATGCTTTTATTTTTTCAAGGGACTCTGAACAGGAGTTTA
AAGCTAAAGTGAGCATTCCCTTACCTGTGGTGTAAAAGATGAATCACACAGGTGTTGCTTTTTAACAAGAACTAAGTGTGATGTTCCTTGGGTGCTGCTGCTATTCAGACTCGCTCTGAGAAATTCGA
TTCTTCTAAAGCGAAGTAATAGGAGGGAGGGGGAATTAAAAAGTCCCATAAAGGAACCACTACTTTTGTAGTCTTACCAACATTTAATCTACTCGCTTTGCATCTGTAATGAGTGCAGGGTCCTTGGC
TGTAGTAGAGTTGGGGTAACTGAAGTTGGCCTCAGTAAGTTGGGAGACTGGTTGTCCCGTGCCACACTCACAGTATGTAGCTATCACTGTAACCAACTAATGCCAAAAGAATGGTTTTGTAATAAAAT
CACAGGTATATCTAAAAGCAA

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Protein RefSeqs	XP_005397133	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000019012
	ENSCLAP00000019012.1

RefSeq Acc Id:

XP_005397133 ⟸ XM_005397076

- UniProtKB:

A0A8C2VQG3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAATEGVGEPAQGGEPGQPEQPPPQPHPPPPQQPQEDEMAAEAGEAVPSPMDDGFLSLDSPTYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERALQLTRDAIELNA
ANYTVWHFRRVLLRSLQKDLHEEMNYITTIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSAWNQRYFVISNTTGYNGHAVL
EREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLSQLLDLQPSHSSPYLIAFLVDVYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHRESDLPTNAQQ

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Ensembl Acc Id:

ENSCLAP00000019012 ⟸ ENSCLAT00000019197

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000013021	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000019197	ENTREZGENE
	ENSCLAT00000019197.1	UniProtKB/TrEMBL
Gene3D-CATH	Protein prenylyltransferase	UniProtKB/TrEMBL
InterPro	Prenyl_trans_a	UniProtKB/TrEMBL
NCBI Gene	Fnta	ENTREZGENE
PANTHER	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	UniProtKB/TrEMBL
	PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHA	UniProtKB/TrEMBL
Pfam	PPTA	UniProtKB/TrEMBL
PROSITE	PFTA	UniProtKB/TrEMBL
Superfamily-SCOP	Protein prenylyltransferase	UniProtKB/TrEMBL
UniProt	A0A8C2VQG3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-03-19	Fnta	farnesyltransferase, CAAX box, subunit alpha	Fnta	farnesyltransferase, CAAX box, alpha	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar