FNTA (farnesyltransferase, CAAX box, alpha) - Rat Genome Database
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Gene: FNTA (farnesyltransferase, CAAX box, alpha) Sus scrofa
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Symbol: FNTA
Name: farnesyltransferase, CAAX box, alpha
RGD ID: 14278768
Description: ENCODES a protein that exhibits acetylcholine receptor regulator activity (ortholog); peptide binding (ortholog); protein farnesyltransferase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of nitric-oxide synthase biosynthetic process (ortholog); neurotransmitter receptor metabolic process (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog); IMMUNODEFICIENCY 15 (ortholog); FOUND IN CAAX-protein geranylgeranyltransferase complex (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,928,357 - 11,978,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,928,327 - 11,953,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
FNTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,928,357 - 11,978,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,928,327 - 11,953,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FNTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl843,034,194 - 43,085,788 (+)EnsemblGRCh38hg38GRCh38
GRCh38843,056,323 - 43,085,785 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,911,466 - 42,940,928 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36843,030,599 - 43,060,088 (+)NCBINCBI36hg18NCBI36
Build 34843,030,640 - 43,060,080NCBI
Celera841,859,884 - 41,889,630 (+)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,434,064 - 41,463,781 (+)NCBIHuRef
CHM1_1842,958,364 - 42,987,853 (+)NCBICHM1_1
Fnta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,488,716 - 26,505,638 (-)NCBIGRCm39mm39
GRCm39 Ensembl826,488,750 - 26,505,678 (-)Ensembl
GRCm38825,998,688 - 26,015,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,998,722 - 26,015,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37827,109,194 - 27,126,073 (-)NCBIGRCm37mm9NCBIm37
MGSCv36827,464,267 - 27,481,146 (-)NCBImm8
Celera827,468,460 - 27,485,887 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map814.27NCBI
Fnta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21666,065,131 - 66,083,460 (+)NCBI
Rnor_6.0 Ensembl1670,834,957 - 70,854,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01670,834,957 - 70,854,724 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,499,605 - 70,519,062 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,440,340 - 70,458,433 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,440,604 - 70,458,698 (+)NCBI
Celera1663,976,260 - 63,994,463 (+)NCBICelera
RH 3.4 Map16622.7RGD
Cytogenetic Map16q12.4NCBI
Fnta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,260,545 - 13,294,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,260,825 - 13,294,025 (+)NCBIChiLan1.0ChiLan1.0
FNTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,744,142 - 39,774,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,743,768 - 39,774,031 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,303,987 - 42,333,743 (+)NCBIMhudiblu_PPA_v0panPan3
FNTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,739,079 - 22,767,914 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,739,070 - 22,767,942 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fnta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936570362,655 - 389,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNTA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1841,057,798 - 41,088,210 (+)NCBI
ChlSab1.1 Ensembl841,057,603 - 41,087,705 (+)Ensembl


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 11
Low 10 4 2 5 2 12 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000042850   ⟹   ENSSSCP00000041145
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,928,380 - 11,978,915 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055022   ⟹   ENSSSCP00000044084
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,928,357 - 11,951,201 (+)Ensembl
RefSeq Acc Id: XM_021077538   ⟹   XP_020933197
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,928,327 - 11,953,139 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020933197 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69536 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020933197   ⟸   XM_021077538
- Sequence:
RefSeq Acc Id: ENSSSCP00000044084   ⟸   ENSSSCT00000055022
RefSeq Acc Id: ENSSSCP00000041145   ⟸   ENSSSCT00000042850


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070015930 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000041145 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044084 UniProtKB/TrEMBL
  ENSSSCP00070026096 UniProtKB/TrEMBL
  ENSSSCP00070026106 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042850 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055022 UniProtKB/TrEMBL
  ENSSSCT00070031302 UniProtKB/TrEMBL
  ENSSSCT00070031317 UniProtKB/TrEMBL
InterPro Prenyl_trans_a UniProtKB/TrEMBL
NCBI Gene FNTA ENTREZGENE
Pfam PPTA UniProtKB/TrEMBL
PROSITE PFTA UniProtKB/TrEMBL
UniProt A0A287AB08_PIG UniProtKB/TrEMBL
  A0A287AJ97_PIG UniProtKB/TrEMBL
  A0A4X1UDX6_PIG UniProtKB/TrEMBL
  A0A4X1UDY6_PIG UniProtKB/TrEMBL