Plcb4 (phospholipase C beta 4) - Rat Genome Database

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Gene: Plcb4 (phospholipase C beta 4) Chinchilla lanigera
Analyze
Symbol: Plcb4
Name: phospholipase C beta 4
RGD ID: 8798820
Description: ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of potassium ion transport (ortholog); phospholipase C-activating endothelin receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); Auriculocondylar Syndrome (ortholog); Auriculocondylar Syndrome 1 (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4; phospholipase C, beta 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541519,310,917 - 19,463,098 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541519,108,120 - 19,462,084 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb4ChinchillaALAGILLE SYNDROME 1  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Alagille syndrome due to a JAG1 point mutationClinVarPMID:10213047 more ...
Plcb4ChinchillaAuriculocondylar Syndrome  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Auriculocondylar syndromeClinVarPMID:16114046 more ...
Plcb4ChinchillaAuriculocondylar Syndrome 1  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Auriculocondylar syndrome 1ClinVarPMID:16114046 more ...
Plcb4ChinchillaAuriculocondylar Syndrome 2  ISOPLCB4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16114046 more ...
Plcb4Chinchillacongenital myasthenic syndrome 18  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: MYASTHENIC SYNDROME more ...ClinVarPMID:28492532 and PMID:32733715
Plcb4Chinchilladevelopmental and epileptic encephalopathy 12  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 12ClinVarPMID:10213047 more ...
Plcb4Chinchilladevelopmental and epileptic encephalopathy 12  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathy 12ClinVarPMID:28492532 and PMID:32733715
Plcb4Chinchillagenetic disease  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16114046 more ...
Plcb4Chinchillalong QT syndrome  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:26132555
Plcb4Chinchillaprostate cancer  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
Plcb4Chinchillauveal melanoma  ISOPLCB4 (Homo sapiens)8554872ClinVar Annotator: match by term: Uveal melanomaClinVarPMID:31186267
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb4Chinchillamelanoma  ISOPLCB4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21499247
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb4ChinchillaAuriculocondylar Syndrome 2  ISOPLCB4 (Homo sapiens)7240710 OMIM 


Biological Process

  

Molecular Function

  

RGD Manual Annotations


  

#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
PMID:22301074   PMID:30032202  



Plcb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541519,310,917 - 19,463,098 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541519,108,120 - 19,462,084 (+)NCBIChiLan1.0ChiLan1.0
PLCB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38209,068,678 - 9,480,808 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl209,067,825 - 9,504,593 (+)EnsemblGRCh38hg38GRCh38
GRCh37209,049,325 - 9,461,455 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36209,024,932 - 9,409,463 (+)NCBINCBI36Build 36hg18NCBI36
Build 34209,024,931 - 9,409,460NCBI
Celera209,119,817 - 9,531,474 (+)NCBICelera
Cytogenetic Map20p12.3-p12.2NCBI
HuRef209,001,542 - 9,413,398 (+)NCBIHuRef
CHM1_1209,050,899 - 9,462,613 (+)NCBICHM1_1
T2T-CHM13v2.0209,111,633 - 9,523,716 (+)NCBIT2T-CHM13v2.0
Plcb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392135,500,523 - 135,856,522 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2135,500,931 - 135,856,513 (+)EnsemblGRCm39 Ensembl
GRCm382135,658,603 - 136,014,602 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2135,659,011 - 136,014,593 (+)EnsemblGRCm38mm10GRCm38
MGSCv372135,567,566 - 135,838,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362135,433,271 - 135,704,509 (+)NCBIMGSCv36mm8
Celera2136,939,191 - 137,211,347 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map266.64NCBI
Plcb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83143,405,721 - 143,775,129 (+)NCBIGRCr8
mRatBN7.23122,952,965 - 123,322,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3122,953,196 - 123,322,392 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3126,861,256 - 127,230,065 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03135,448,283 - 135,807,045 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03133,116,870 - 133,485,687 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03128,601,163 - 128,971,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3128,756,799 - 128,971,746 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03135,089,551 - 135,459,248 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43123,706,313 - 124,077,381 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13123,611,885 - 123,982,941 (+)NCBI
Celera3121,694,557 - 122,062,160 (+)NCBICelera
Cytogenetic Map3q36NCBI
PLCB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2219,967,849 - 10,403,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1209,964,676 - 10,400,261 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0209,042,127 - 9,454,207 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1208,846,152 - 9,456,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl209,192,061 - 9,456,443 (+)Ensemblpanpan1.1panPan2
PLCB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12412,750,631 - 13,169,697 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2412,752,083 - 13,169,745 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2412,575,552 - 12,993,940 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02413,157,425 - 13,576,878 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2413,157,425 - 13,576,868 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12412,769,385 - 13,187,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02412,868,981 - 13,288,064 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02413,206,767 - 13,626,337 (-)NCBIUU_Cfam_GSD_1.0
Plcb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640161,560,396 - 161,921,708 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364859,991,299 - 10,353,123 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364859,991,731 - 10,353,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1717,916,110 - 18,402,532 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11717,915,984 - 18,402,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21720,428,956 - 20,770,454 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLCB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,650,604 - 29,059,435 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,650,421 - 28,915,290 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607115,510,020 - 15,919,543 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plcb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474110,277,805 - 10,430,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474110,047,899 - 10,435,088 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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1 to 16 of 16 rows
RefSeq Transcripts XM_005380864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005380865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005380866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01016463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01016470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01136647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN633115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSCLAT00000016007   ⟹   ENSCLAP00000015843
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541519,310,917 - 19,460,601 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016008   ⟹   ENSCLAP00000015844
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541519,310,922 - 19,463,098 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016009   ⟹   ENSCLAP00000015845
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541519,310,922 - 19,463,098 (+)Ensembl
RefSeq Acc Id: XM_005380864   ⟹   XP_005380921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,178,357 - 19,462,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380865   ⟹   XP_005380922
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,178,356 - 19,460,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380866   ⟹   XP_005380923
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,178,356 - 19,460,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512269   ⟹   XP_013367723
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,178,357 - 19,462,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512270   ⟹   XP_013367724
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,108,120 - 19,462,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512271   ⟹   XP_013367725
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,121,627 - 19,462,084 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005380922   ⟸   XM_005380865
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005380921   ⟸   XM_005380864
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005380923   ⟸   XM_005380866
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VI62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367724   ⟸   XM_013512270
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VQ36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367725   ⟸   XM_013512271
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VQ36 (UniProtKB/TrEMBL)
- Sequence:
C2   PI-PLC Y-box



1 to 40 of 49 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000010896 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016007 ENTREZGENE
  ENSCLAT00000016007.1 UniProtKB/TrEMBL
  ENSCLAT00000016008 ENTREZGENE
  ENSCLAT00000016008.1 UniProtKB/TrEMBL
  ENSCLAT00000016009 ENTREZGENE
  ENSCLAT00000016009.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1230.10 UniProtKB/TrEMBL
  2.30.29.240 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.20.20.190 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  PI-PLC_fam UniProtKB/TrEMBL
  PLC-beta UniProtKB/TrEMBL
  PLC-beta_C UniProtKB/TrEMBL
  PLC-beta_C_sf UniProtKB/TrEMBL
  PLC-beta_PH UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/TrEMBL
  PLCB1-4-like_EFh UniProtKB/TrEMBL
  PLipase_C_PInositol-sp_X_dom UniProtKB/TrEMBL
  PLipase_C_Pinositol-sp_Y UniProtKB/TrEMBL
NCBI Gene Plcb4 ENTREZGENE
PANTHER 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE BETA-4 UniProtKB/TrEMBL
  PTHR10336 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  PH_14 UniProtKB/TrEMBL
  PI-PLC-X UniProtKB/TrEMBL
  PI-PLC-Y UniProtKB/TrEMBL
  PLC-beta_C UniProtKB/TrEMBL
  PLCB1-4-like_EFh UniProtKB/TrEMBL
PIRSF PLC-beta UniProtKB/TrEMBL
PRINTS PHPHLIPASEC UniProtKB/TrEMBL
PROSITE PIPLC_X_DOMAIN UniProtKB/TrEMBL
  PIPLC_Y_DOMAIN UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
SMART PLCXc UniProtKB/TrEMBL
  PLCYc UniProtKB/TrEMBL
1 to 40 of 49 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Plcb4  phospholipase C beta 4    phospholipase C, beta 4  Symbol and/or name change 5135510 APPROVED