Gdi1 (GDP dissociation inhibitor 1) - Rat Genome Database

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Gene: Gdi1 (GDP dissociation inhibitor 1) Chinchilla lanigera
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Symbol: Gdi1
Name: GDP dissociation inhibitor 1
RGD ID: 8768195
Description: ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); Rab GDP-dissociation inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of axonogenesis (ortholog); negative regulation of protein targeting to membrane (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab GDP dissociation inhibitor alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580934,798 - 941,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580935,021 - 941,081 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gdi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580934,798 - 941,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580935,021 - 941,081 (+)NCBIChiLan1.0ChiLan1.0
GDI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,437,154 - 154,443,467 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,436,913 - 154,443,467 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,665,500 - 153,671,814 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,318,715 - 153,325,008 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X153,234,158 - 153,235,516NCBI
CeleraX153,826,304 - 153,832,858 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,217,606 - 142,249,463 (+)NCBIHuRef
CHM1_1X153,576,897 - 153,583,451 (+)NCBICHM1_1
T2T-CHM13v2.0X152,673,662 - 152,679,975 (+)NCBIT2T-CHM13v2.0
Gdi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,348,618 - 73,355,473 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,348,604 - 73,355,468 (+)EnsemblGRCm39 Ensembl
GRCm38X74,305,012 - 74,311,867 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,304,998 - 74,311,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,550,351 - 71,557,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,557,976 - 70,564,579 (+)NCBIMGSCv36mm8
CeleraX65,558,803 - 65,565,658 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.97NCBI
Gdi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,238,900 - 157,245,562 (+)NCBIGRCr8
mRatBN7.2X152,087,611 - 152,094,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,087,444 - 152,094,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,228,737 - 154,235,400 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,791,970 - 157,798,633 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,463,769 - 155,470,432 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,400,734 - 156,407,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,400,736 - 156,407,404 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,140,881 - 152,147,543 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,299,115 - 160,305,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,376,327 - 160,382,037 (-)NCBI
Celera1135,802,481 - 135,809,143 (-)NCBICelera
Cytogenetic MapXq37NCBI
GDI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,411,375 - 154,417,873 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,415,064 - 154,421,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,878,690 - 143,885,251 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,749,661 - 153,755,877 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,749,661 - 153,755,877 (+)Ensemblpanpan1.1panPan2
GDI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,141,633 - 122,146,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,141,566 - 122,146,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,283,325 - 125,288,416 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,256,970 - 125,327,738 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,052,346 - 121,057,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,567,480 - 123,572,571 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,329,171 - 123,334,262 (+)NCBIUU_Cfam_GSD_1.0
Gdi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,451,096 - 119,457,045 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,188,628 - 1,194,863 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,188,793 - 1,194,816 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,960,990 - 124,966,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,960,835 - 124,966,833 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,687,134 - 143,692,968 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,665,274 - 66,671,937 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gdi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946902,461 - 909,613 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946902,831 - 908,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000003454   ⟹   ENSCLAP00000003386
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955580934,798 - 941,081 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000003455   ⟹   ENSCLAP00000003387
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955580934,798 - 940,572 (+)Ensembl
RefSeq Acc Id: XM_005414200   ⟹   XP_005414257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580935,022 - 941,081 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509689   ⟹   XP_013365143
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580935,021 - 941,081 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414257 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003386
  ENSCLAP00000003386.1
  ENSCLAP00000003387.1
RefSeq Acc Id: XP_005414257   ⟸   XM_005414200
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UP04 (UniProtKB/TrEMBL),   A0A8C2URU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365143   ⟸   XM_013509689
- Peptide Label: isoform X1
- UniProtKB: A0A8C2URU7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000003386   ⟸   ENSCLAT00000003454
Ensembl Acc Id: ENSCLAP00000003387   ⟸   ENSCLAT00000003455


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003454 ENTREZGENE
  ENSCLAT00000003454.1 UniProtKB/TrEMBL
  ENSCLAT00000003455.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
  Guanine Nucleotide Dissociation Inhibitor, domain 1 UniProtKB/TrEMBL
  Guanine Nucleotide Dissociation Inhibitor, domain 2 UniProtKB/TrEMBL
InterPro FAD/NAD-bd_sf UniProtKB/TrEMBL
  GDP_dissociation_inhibitor UniProtKB/TrEMBL
  RabGDI UniProtKB/TrEMBL
NCBI Gene Gdi1 ENTREZGENE
PANTHER PTHR11787 UniProtKB/TrEMBL
  RAB GDP DISSOCIATION INHIBITOR ALPHA UniProtKB/TrEMBL
Pfam GDI UniProtKB/TrEMBL
PRINTS RABGDI UniProtKB/TrEMBL
  RABGDIREP UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt A0A8C2UP04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2URU7 ENTREZGENE, UniProtKB/TrEMBL