CNR1 (cannabinoid receptor 1) - Rat Genome Database

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Gene: CNR1 (cannabinoid receptor 1) Homo sapiens
Analyze
Symbol: CNR1
Name: cannabinoid receptor 1
RGD ID: 735525
HGNC Page HGNC:2159
Description: Enables cannabinoid receptor activity and identical protein binding activity. Involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway and cannabinoid signaling pathway. Located in actin cytoskeleton and plasma membrane. Implicated in heroin dependence; obesity; schizophrenia; and type 2 diabetes mellitus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CANN6; cannabinoid receptor 1 (brain); CB-R; CB1; CB1A; CB1K5; CB1R; central cannabinoid receptor; CNR
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38688,139,864 - 88,167,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl688,139,864 - 88,166,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37688,849,583 - 88,877,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36688,906,302 - 88,911,775 (-)NCBINCBI36Build 36hg18NCBI36
Build 34688,906,301 - 88,911,775NCBI
Celera689,267,475 - 89,293,659 (-)NCBICelera
Cytogenetic Map6q15NCBI
HuRef686,064,928 - 86,090,983 (-)NCBIHuRef
CHM1_1688,947,341 - 88,973,526 (-)NCBICHM1_1
T2T-CHM13v2.0689,348,358 - 89,375,841 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
CNR1Humanalcohol use disorder sexual_dimorphismISOCnr1 (Rattus norvegicus)401959751associated with chronic stress in female ratsRGD 
CNR1HumanAlcohol Withdrawal Delirium  IAGP 1626329 RGD 
CNR1HumanAscites  ISOCnr1 (Rattus norvegicus)2314678associated with Liver Cirrhosis and ExperimentalRGD 
CNR1Humancannabis abuse  ISOCnr1 (Rattus norvegicus)596933102 RGD 
CNR1Humandiabetic neuropathy  ISOCnr1 (Rattus norvegicus)2314631associated with Diabetes Mellitus and ExperimentalRGD 
CNR1HumanExperimental Diabetes Mellitus  ISOCnr1 (Rattus norvegicus)2314633protein:increased expression:hypothalamus and striatumRGD 
CNR1HumanFever  ISOCnr1 (Rattus norvegicus)2314645 RGD 
CNR1Humanfocal epilepsy  ISOCnr1 (Rattus norvegicus)2314658 RGD 
CNR1HumanHemorrhagic Shock  ISOCnr1 (Rattus norvegicus)2314664mRNA more ...RGD 
CNR1Humanheroin dependence treatmentIAGP 597805904DNA:SNP: :rs806368RGD 
CNR1Humanhypertension  ISOCnr1 (Rattus norvegicus)2314680 RGD 
CNR1HumanHypotension  ISOCnr1 (Rattus norvegicus)2314676 RGD 
CNR1Humanimpotence  ISOCnr1 (Rattus norvegicus)2314634associated with Diabetes Mellitus and ExperimentalRGD 
CNR1HumanInsulin Resistance  ISOCnr1 (Rattus norvegicus)9068941associated with ObesityRGDPMID:19553924 and REF_RGD_ID:2314662
CNR1HumanIntravenous Substance Abuse  IAGP 1358448 RGD 
CNR1Humanmorphine dependence treatmentISOCnr1 (Mus musculus)401940145 RGD 
CNR1HumanMyocardial Reperfusion Injury  ISOCnr1 (Rattus norvegicus)2316217 RGD 
CNR1HumanNerve Degeneration  ISOCnr1 (Rattus norvegicus)10059347 RGD 
CNR1Humanobesity  ISOCnr1 (Rattus norvegicus)401827956DNA more ...RGD 
CNR1Humanobesity  IDA 401827956DNA:hypermethylation:promoter and peripheral blood mononuclear cellRGD 
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Original Reference(s)
CNR1HumanAnimal Disease Models  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:23072421
CNR1Humananxiety disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15081793 and PMID:18690112
CNR1Humanattention deficit hyperactivity disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:22034972
CNR1HumanBinge-Eating Disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:23072421
CNR1Humancannabis abuse  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19016476
CNR1HumanCatalepsy  EXP 11554173CTD more ...CTDPMID:10318961 more ...
CNR1Humancholestasis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26884397
CNR1HumanCocaine-Related Disorders  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16314880 more ...
CNR1Humancognitive disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:29294249
CNR1Humandevelopmental coordination disorder  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:26460022
CNR1HumanEndometrial Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:29805589 and PMID:32751388
CNR1Humanendometriosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20864642
CNR1HumanExperimental Liver Cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:17043671
CNR1Humanglucose intolerance  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:26563389
CNR1HumanHuntington's disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20929960
CNR1HumanHyperalgesia  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:17572696
CNR1HumanHypotension  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:9888857
CNR1HumanHypothermia  EXP 11554173CTD more ...CTDPMID:9888857 more ...
CNR1Humanliver cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:11433348 and PMID:21863215
CNR1HumanMemory Disorders  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:29294249
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Original Reference(s)
CNR1Human(+)-pilocarpine decreases expressionISOCnr1 (Rattus norvegicus)6480464Pilocarpine results in decreased expression of CNR1 proteinCTDPMID:19368833
CNR1Human(R)-noradrenaline affects expressionEXP 6480464Norepinephrine affects the expression of CNR1 mRNACTDPMID:29650773
CNR1Human(S)-amphetamine decreases response to substanceISOCnr1 (Mus musculus)6480464CNR1 mutant form results in decreased susceptibility to DextroamphetamineCTDPMID:17596442
CNR1Human(S)-amphetamine multiple interactionsISOCnr1 (Mus musculus)6480464CNR1 mutant form inhibits the reaction [Dextroamphetamine results in increased phosphorylation of MAPK1 protein] and CNR1 mutant form inhibits the reaction [Dextroamphetamine results in increased phosphorylation of MAPK3 protein]CTDPMID:17596442
CNR1Human(S)-nicotine affects response to substanceISOCnr1 (Mus musculus)6480464CNR1 protein affects the susceptibility to NicotineCTDPMID:12384171
CNR1Human(S)-nicotine increases expressionISOCnr1 (Mus musculus)6480464Nicotine results in increased expression of CNR1 mRNACTDPMID:21955143
CNR1Human(S)-nicotine multiple interactionsISOCnr1 (Mus musculus)6480464[rimonabant binds to and results in decreased activity of CNR1 protein] which results in decreased susceptibility to NicotineCTDPMID:16416159
CNR1Human1,2-dichloroethane decreases expressionISOCnr1 (Mus musculus)6480464ethylene dichloride results in decreased expression of CNR1 mRNACTDPMID:28960355
CNR1Human1,2-dimethylhydrazine decreases expressionISOCnr1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CNR1 mRNACTDPMID:22206623
CNR1Human1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile decreases expressionISOCnr1 (Rattus norvegicus)6480464Citalopram results in decreased expression of CNR1 proteinCTDPMID:28866072
CNR1Human1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOCnr1 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:28978077
CNR1Human1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOCnr1 (Mus musculus)6480464AM 1241 inhibits the reaction [1-Methyl-4-phenyl-1 more ...CTDPMID:28978077
CNR1Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of CNR1 mRNA more ...CTDPMID:17404688 more ...
CNR1Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOCnr1 (Rattus norvegicus)64804642 more ...CTDPMID:27291303
CNR1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCnr1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CNR1 mRNACTDPMID:21570461
CNR1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCnr1 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of CNR1 mRNACTDPMID:32109520 and PMID:34747641
CNR1Human2,4-dinitrobenzenesulfonic acid decreases response to substanceISOCnr1 (Mus musculus)6480464CNR1 results in decreased susceptibility to 2 and 4-dinitrobenzenesulfonic acidCTDPMID:15085199
CNR1Human2-arachidonoylglycerol multiple interactionsISOCnr1 (Rattus norvegicus)6480464Acetaldehyde promotes the reaction [glyceryl 2-arachidonate results in increased expression of CNR1 mRNA] and Nitroglycerin affects the reaction [glyceryl 2-arachidonate affects the activity of CNR1 protein]CTDPMID:16775503 and PMID:21863215
CNR1Human2-arachidonoylglycerol increases expressionISOCnr1 (Mus musculus)6480464glyceryl 2-arachidonate results in increased expression of CNR1 mRNACTDPMID:28095641
CNR1Human2-arachidonoylglycerol multiple interactionsEXP 6480464[GRK2 protein co-treated with glyceryl 2-arachidonate] affects the reaction [CNR1 protein affects the localization of ARRB2 protein] more ...CTDPMID:23894352 and PMID:31024316

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Biological Process
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Original Reference(s)
CNR1Humanadenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inIBAMGI:1333809 more ...150520179 GO_CentralGO_REF:0000033
CNR1Humanadenylate cyclase-modulating G protein-coupled receptor signaling pathway involved_inIDA 150520179 PMID:18761332UniProtPMID:18761332
CNR1Humanadenylate cyclase-modulating G protein-coupled receptor signaling pathway involved_inIEAUniRule:UR000380770150520179 UniProtGO_REF:0000104
CNR1Humanaxonal fasciculation acts_upstream_of_or_withinIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humancannabinoid signaling pathway involved_inIEAGO:0004949150520179 GOCGO_REF:0000108
CNR1Humancannabinoid signaling pathway involved_inIDA 150520179 PMID:17895407UniProtPMID:17895407
CNR1Humancell communication involved_inIEAARBA:ARBA00028945150520179 UniProtGO_REF:0000117
CNR1HumanG protein-coupled receptor signaling pathway  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:2165569 and REF_RGD_ID:1298770
CNR1HumanG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-0297150520179 UniProtGO_REF:0000043
CNR1HumanG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 more ...150520179 InterProGO_REF:0000002
CNR1HumanG protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger involved_inTAS 150520179 PMID:1718258PINCPMID:1718258
CNR1Humanglucose homeostasis acts_upstream_of_or_withinIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humanlearning or memory  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19880592 and REF_RGD_ID:2314636
CNR1Humanmaternal process involved in female pregnancy  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19860893 and REF_RGD_ID:2316191
CNR1Humanmemory  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19666083 and REF_RGD_ID:2314648
CNR1Humannegative regulation of action potential  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:20067581 and REF_RGD_ID:2316187
CNR1Humannegative regulation of blood pressure  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19295473 and REF_RGD_ID:2314676
CNR1Humannegative regulation of dopamine secretion  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19187091 and REF_RGD_ID:2314679
CNR1Humannegative regulation of fatty acid beta-oxidation  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:19724020 and REF_RGD_ID:2314644
CNR1Humannegative regulation of mast cell activation  ISOCnr1 (Rattus norvegicus)9068941 RGDPMID:18552882 and REF_RGD_ID:2316220
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Cellular Component
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Original Reference(s)
CNR1Humanactin cytoskeleton located_inIDA 150520179 HPAGO_REF:0000052
CNR1Humanaxon located_inIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humanaxon located_inIEAUniProtKB-SubCell:SL-0279150520179 UniProtGO_REF:0000044
CNR1Humancell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
CNR1Humancytoplasm is_active_inIBAMGI:104615 more ...150520179 GO_CentralGO_REF:0000033
CNR1HumanGABA-ergic synapse is_active_inIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humanglutamatergic synapse is_active_inIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humangrowth cone located_inIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humanmembrane located_inIEAInterPro:IPR000276 more ...150520179 InterProGO_REF:0000002
CNR1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
CNR1Humanmembrane raft located_inIEAUniProtKB-SubCell:SL-0370150520179 UniProtGO_REF:0000044
CNR1Humanmembrane raft part_ofISOCnr1 (Rattus norvegicus)9068941PMID:21895628CACAOPMID:21895628 and REF_RGD_ID:10047252
CNR1Humanmitochondrial outer membrane located_inIEAUniProtKB-KW:KW-1000150520179 UniProtGO_REF:0000043
CNR1Humanmitochondrial outer membrane located_inIEAUniProtKB-SubCell:SL-0172150520179 UniProtGO_REF:0000044
CNR1Humanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
CNR1Humanmitochondrion is_active_inIEAUniProtKB:P47746 and ensembl:ENSMUSP00000055797150520179 EnsemblGO_REF:0000107
CNR1Humanplasma membrane located_inIEAUniRule:UR000380770150520179 UniProtGO_REF:0000104
CNR1Humanplasma membrane is_active_inIBAMGI:104615 more ...150520179 GO_CentralGO_REF:0000033
CNR1Humanplasma membrane located_inTAS 150520179 PMID:1718258ReactomePMID:1718258 more ...
CNR1Humanplasma membrane located_inIDA 150520179 PMID:17895407HPAGO_REF:0000052 and PMID:17895407
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Molecular Function
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Imported Annotations - PID (archival)

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Original Reference(s)
CNR1HumanN-cadherin signaling pathway  EXP 6484113 PIDPID:200209

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#
Reference Title
Reference Citation
1. Effect of cannabinoid receptor agonists on streptozotocin-induced hyperalgesia in diabetic neuropathy. Bujalska M Pharmacology. 2008;82(3):193-200. Epub 2008 Sep 23.
2. Precision therapeutic opioid dosing implications from genetic biomarkers and craving score. Chang HW, etal., Medicine (Baltimore). 2020 May 29;99(22):e20429. doi: 10.1097/MD.0000000000020429.
3. Cannabinoid receptor gene (CNR1): association with i.v. drug use. Comings DE, etal., Mol Psychiatry 1997 Mar;2(2):161-8.
4. Food intake-independent effects of CB1 antagonism on glucose and lipid metabolism. Cota D, etal., Obesity (Silver Spring). 2009 Aug;17(8):1641-5. Epub 2009 Mar 26.
5. Cortical expression of brain derived neurotrophic factor and type-1 cannabinoid receptor after striatal excitotoxic lesions. De March Z, etal., Neuroscience. 2008 Mar 27;152(3):734-40. doi: 10.1016/j.neuroscience.2007.11.044. Epub 2007 Dec 8.
6. Type 1 diabetes alters brain cannabinoid receptor expression and phosphorylation status in rats. Diaz-Asensio C, etal., Horm Metab Res. 2008 Jul;40(7):454-8. Epub 2008 Mar 27.
7. Cannabinoid type 1 receptor antagonism delays ascites formation in rats with cirrhosis. Domenicali M, etal., Gastroenterology. 2009 Jul;137(1):341-9. Epub 2009 Jan 14.
8. Temporal characterization of changes in hippocampal cannabinoid CB(1) receptor expression following pilocarpine-induced status epilepticus. Falenski KW, etal., Brain Res. 2009 Mar 25;1262:64-72. Epub 2009 Jan 31.
9. Endogenous cannabinoids induce fever through the activation of CB1 receptors. Fraga D, etal., Br J Pharmacol. 2009 Aug;157(8):1494-501.
10. The endocannabinoid system is modulated in response to spinal cord injury in rats. Garcia-Ovejero D, etal., Neurobiol Dis. 2009 Jan;33(1):57-71. Epub 2008 Sep 30.
11. Anandamide improves the impaired nitric oxide-mediated neurogenic relaxation of the corpus cavernosum in diabetic rats: involvement of cannabinoid CB1 and vanilloid VR1 receptors. Ghasemi M, etal., BJU Int. 2007 Dec;100(6):1385-90. Epub 2007 Sep 10.
12. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
13. Acute hypertension reveals depressor and vasodilator effects of cannabinoids in conscious rats. Ho WS and Gardiner SM, Br J Pharmacol. 2009 Jan;156(1):94-104.
14. CB1 cannabinoid receptor participates in the vascular hyporeactivity resulting from hemorrhagic shock in rats. Hou LC, etal., Chin Med J (Engl). 2009 Apr 20;122(8):950-4.
15. The CB(1) antagonist rimonabant is adjunctively therapeutic as well as monotherapeutic in an animal model of Parkinson's disease. Kelsey JE, etal., Behav Brain Res. 2009 Nov 5;203(2):304-7. Epub 2009 May 3.
16. Izvestiia Akademii nauk. Seriia biologicheskaia / Rossiiskaia akademiia nauk Lasukova OV, etal., Izv Akad Nauk Ser Biol. 2008 Jul-Aug;(4):471-8.
17. Schizophrenia and the cannabinoid receptor type 1 (CB1): association study using a single-base polymorphism in coding exon 1. Leroy S, etal., Am J Med Genet 2001 Dec 8;105(8):749-52.
18. Synaptic neurotransmission depression in ventral tegmental dopamine neurons and cannabinoid-associated addictive learning. Liu Z, etal., PLoS One. 2010 Dec 20;5(12):e15634. doi: 10.1371/journal.pone.0015634.
19. Sex-dependent influence of chronic mild stress (CMS) on voluntary alcohol consumption; study of neurobiological consequences. Marco EM, etal., Pharmacol Biochem Behav. 2017 Jan;152:68-80. doi: 10.1016/j.pbb.2016.11.005. Epub 2016 Nov 25.
20. No evidence for an involvement of variants in the cannabinoid receptor gene (CNR1) in obesity in German children and adolescents. Muller TD, etal., Mol Genet Metab. 2007 Apr;90(4):429-34. Epub 2007 Feb 8.
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PMID:1718258   PMID:1931832   PMID:2165569   PMID:2263478   PMID:2834384   PMID:7876112   PMID:8889548   PMID:10454705   PMID:10762343   PMID:11140838   PMID:11168387   PMID:11214319  
PMID:11324942   PMID:11353438   PMID:11727770   PMID:11860478   PMID:11894096   PMID:12060783   PMID:12082570   PMID:12095632   PMID:12153574   PMID:12237474   PMID:12435806   PMID:12477932  
PMID:12497582   PMID:12511587   PMID:12690115   PMID:12752773   PMID:12767117   PMID:12920192   PMID:12970790   PMID:14574404   PMID:14580383   PMID:14628192   PMID:14714115   PMID:14749627  
PMID:14755457   PMID:14966196   PMID:14966476   PMID:15108190   PMID:15289816   PMID:15472222   PMID:15489334   PMID:15562018   PMID:15620723   PMID:15657045   PMID:15657046   PMID:15668727  
PMID:15688035   PMID:15728830   PMID:15927811   PMID:15952782   PMID:16204352   PMID:16263116   PMID:16314880   PMID:16344560   PMID:16365309   PMID:16623851   PMID:16634642   PMID:16712507  
PMID:16715087   PMID:16741937   PMID:16788767   PMID:16818376   PMID:16917946   PMID:16962033   PMID:17015679   PMID:17041005   PMID:17065342   PMID:17068343   PMID:17074588   PMID:17160086  
PMID:17270342   PMID:17284627   PMID:17356572   PMID:17370106   PMID:17384224   PMID:17449448   PMID:17508995   PMID:17509535   PMID:17533584   PMID:17595161   PMID:17655760   PMID:17669634  
PMID:17678969   PMID:17683024   PMID:17684478   PMID:17712725   PMID:17873324   PMID:17881126   PMID:17895407   PMID:17923791   PMID:17942526   PMID:17978319   PMID:18064064   PMID:18092149  
PMID:18156315   PMID:18165231   PMID:18174385   PMID:18179391   PMID:18186055   PMID:18213623   PMID:18240029   PMID:18267983   PMID:18285348   PMID:18287809   PMID:18319252   PMID:18331587  
PMID:18336811   PMID:18354002   PMID:18375449   PMID:18477688   PMID:18483286   PMID:18519829   PMID:18577758   PMID:18579347   PMID:18599552   PMID:18606950   PMID:18606954   PMID:18606956  
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CNR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38688,139,864 - 88,167,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl688,139,864 - 88,166,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37688,849,583 - 88,877,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36688,906,302 - 88,911,775 (-)NCBINCBI36Build 36hg18NCBI36
Build 34688,906,301 - 88,911,775NCBI
Celera689,267,475 - 89,293,659 (-)NCBICelera
Cytogenetic Map6q15NCBI
HuRef686,064,928 - 86,090,983 (-)NCBIHuRef
CHM1_1688,947,341 - 88,973,526 (-)NCBICHM1_1
T2T-CHM13v2.0689,348,358 - 89,375,841 (-)NCBIT2T-CHM13v2.0
Cnr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39433,923,171 - 33,948,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl433,924,593 - 33,948,831 (+)EnsemblGRCm39 Ensembl
GRCm38433,923,171 - 33,948,831 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl433,924,593 - 33,948,831 (+)EnsemblGRCm38mm10GRCm38
MGSCv37434,011,607 - 34,035,806 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36434,253,245 - 34,277,444 (+)NCBIMGSCv36mm8
Celera433,679,304 - 33,703,476 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map416.28NCBI
Cnr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8553,204,867 - 53,230,396 (+)NCBIGRCr8
mRatBN7.2548,408,543 - 48,436,099 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl548,408,574 - 48,435,099 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx550,575,033 - 50,597,155 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0552,174,251 - 52,196,375 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0552,110,881 - 52,132,920 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0549,307,584 - 49,333,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl549,311,030 - 49,333,056 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0553,878,619 - 53,904,013 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4550,427,173 - 50,445,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1550,427,351 - 50,445,650 (+)NCBI
Celera547,168,709 - 47,190,724 (+)NCBICelera
Cytogenetic Map5q21NCBI
Cnr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541115,052,163 - 15,077,320 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541115,052,151 - 15,077,320 (-)NCBIChiLan1.0ChiLan1.0
CNR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25108,222,001 - 108,249,883 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16106,115,872 - 106,143,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0686,017,141 - 86,044,889 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1689,289,102 - 89,315,174 (-)NCBIpanpan1.1PanPan1.1panPan2
CNR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11247,537,240 - 47,560,723 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1247,509,583 - 47,560,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1247,344,588 - 47,368,064 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01248,342,012 - 48,365,459 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1248,346,226 - 48,363,768 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11247,639,694 - 47,663,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01247,561,070 - 47,584,546 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01247,752,753 - 47,776,234 (-)NCBIUU_Cfam_GSD_1.0
Cnr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494682,664,248 - 82,691,073 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365103,781,210 - 3,802,693 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365103,779,930 - 3,806,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl156,467,835 - 56,492,602 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1156,466,022 - 56,493,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2163,201,796 - 63,224,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11312,626,259 - 12,653,253 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1312,630,270 - 12,631,688 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040188,875,655 - 188,902,692 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247996,101,728 - 6,126,520 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247996,100,709 - 6,126,530 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CNR1
31 total Variants

Predicted Target Of
Summary Value
Count of predictions:8055
Count of miRNA genes:1185
Interacting mature miRNAs:1516
Transcripts:ENST00000362094, ENST00000369499, ENST00000369501, ENST00000428600, ENST00000468898, ENST00000535130, ENST00000537554, ENST00000549716, ENST00000549890, ENST00000551417
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298426BFD3_HBody fluid distribution QTL 3 (human)2.790.01Body fluid distributionimpedance ratio684873647110873647Human

RH80958  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,849,629 - 88,849,859UniSTSGRCh37
Build 36688,906,348 - 88,906,578RGDNCBI36
Celera689,267,521 - 89,267,751RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,064,974 - 86,065,204UniSTS
D6S1243E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,851,593 - 88,851,792UniSTSGRCh37
Build 36688,908,312 - 88,908,511RGDNCBI36
Celera689,269,485 - 89,269,684RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,066,938 - 86,067,137UniSTS
PMC193595P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,724 - 88,853,923UniSTSGRCh37
Build 36688,910,443 - 88,910,642RGDNCBI36
Celera689,271,616 - 89,271,815RGD
HuRef686,069,069 - 86,069,268UniSTS
CNR1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,854,265 - 88,854,460UniSTSGRCh37
Build 36688,910,984 - 88,911,179RGDNCBI36
Celera689,272,157 - 89,272,352RGD
HuRef686,069,610 - 86,069,805UniSTS
D6S1909  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,851,266 - 88,851,518UniSTSGRCh37
Build 36688,907,985 - 88,908,237RGDNCBI36
Celera689,269,158 - 89,269,410RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,066,611 - 86,066,863UniSTS
Whitehead-RH Map6577.6UniSTS
Whitehead-YAC Contig Map6 UniSTS
SHGC-35377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,281 - 88,853,480UniSTSGRCh37
Build 36688,910,000 - 88,910,199RGDNCBI36
Celera689,271,173 - 89,271,372RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,068,626 - 86,068,825UniSTS
Stanford-G3 RH Map63785.0UniSTS
GeneMap99-GB4 RH Map6387.19UniSTS
Whitehead-RH Map6586.3UniSTS
NCBI RH Map61243.8UniSTS
GeneMap99-G3 RH Map64091.0UniSTS
RH70837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,662 - 88,853,820UniSTSGRCh37
Build 36688,910,381 - 88,910,539RGDNCBI36
Celera689,271,554 - 89,271,712RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,069,007 - 86,069,165UniSTS
GeneMap99-GB4 RH Map6385.58UniSTS
RH79168  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,033 - 88,853,207UniSTSGRCh37
Build 36688,909,752 - 88,909,926RGDNCBI36
Celera689,270,925 - 89,271,099RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,068,378 - 86,068,552UniSTS
GeneMap99-GB4 RH Map6389.88UniSTS
WI-19695  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,849,618 - 88,849,886UniSTSGRCh37
Build 36688,906,337 - 88,906,605RGDNCBI36
Celera689,267,510 - 89,267,778RGD
Cytogenetic Map6q14-q15UniSTS
HuRef686,064,963 - 86,065,231UniSTS
GeneMap99-GB4 RH Map6383.9UniSTS
Whitehead-RH Map6569.7UniSTS
NCBI RH Map61194.9UniSTS
UniSTS:482039  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,540 - 88,855,031UniSTSGRCh37
Celera689,271,432 - 89,272,923UniSTS
HuRef686,068,885 - 86,070,376UniSTS
UniSTS:482606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37688,853,575 - 88,854,993UniSTSGRCh37
Celera689,271,467 - 89,272,885UniSTS
HuRef686,068,920 - 86,070,338UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2305 2788 2245 4900 1596 2144 3 512 1857 353 2226 6929 6344 16 3701 787 1636 1527 166


1 to 30 of 56 rows
RefSeq Transcripts NM_001160226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF107262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY011601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY225225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 56 rows

Ensembl Acc Id: ENST00000362094   ⟹   ENSP00000355418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,145,274 (-)Ensembl
Ensembl Acc Id: ENST00000369499   ⟹   ENSP00000358511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,164,343 (-)Ensembl
Ensembl Acc Id: ENST00000369501   ⟹   ENSP00000358513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,166,347 (-)Ensembl
Ensembl Acc Id: ENST00000428600   ⟹   ENSP00000412192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,163,024 (-)Ensembl
Ensembl Acc Id: ENST00000468898   ⟹   ENSP00000420188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,145,274 (-)Ensembl
Ensembl Acc Id: ENST00000549890   ⟹   ENSP00000446819
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,145,365 (-)Ensembl
Ensembl Acc Id: ENST00000551417   ⟹   ENSP00000446702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl688,139,864 - 88,166,347 (-)Ensembl
RefSeq Acc Id: NM_001160226   ⟹   NP_001153698
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
GRCh37688,849,583 - 88,876,063 (-)NCBI
HuRef686,064,928 - 86,090,983 (-)ENTREZGENE
CHM1_1688,947,341 - 88,973,526 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001160258   ⟹   NP_001153730
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
GRCh37688,849,583 - 88,876,063 (-)NCBI
HuRef686,064,928 - 86,090,983 (-)ENTREZGENE
CHM1_1688,947,341 - 88,973,526 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001160259   ⟹   NP_001153731
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
GRCh37688,849,583 - 88,876,063 (-)NCBI
HuRef686,064,928 - 86,090,983 (-)ENTREZGENE
CHM1_1688,947,341 - 88,973,526 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365869   ⟹   NP_001352798
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365870   ⟹   NP_001352799
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365872   ⟹   NP_001352801
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365874   ⟹   NP_001352803
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,163,024 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,371,516 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001370545   ⟹   NP_001357474
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,652 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,144 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001370546   ⟹   NP_001357475
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,349 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,841 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001370547   ⟹   NP_001357476
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,349 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,841 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001424094   ⟹   NP_001411023
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,349 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,841 (-)NCBI
RefSeq Acc Id: NM_001424095   ⟹   NP_001411024
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,109 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,601 (-)NCBI
RefSeq Acc Id: NM_001424096   ⟹   NP_001411025
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,109 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,601 (-)NCBI
RefSeq Acc Id: NM_001424097   ⟹   NP_001411026
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,167,109 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,375,601 (-)NCBI
RefSeq Acc Id: NM_001424098   ⟹   NP_001411027
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
RefSeq Acc Id: NM_016083   ⟹   NP_057167
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
GRCh37688,849,583 - 88,876,063 (-)NCBI
Build 36688,906,302 - 88,911,775 (-)NCBI Archive
HuRef686,064,928 - 86,090,983 (-)ENTREZGENE
CHM1_1688,947,341 - 88,973,526 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
Sequence:
RefSeq Acc Id: NM_033181   ⟹   NP_149421
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,145,337 (-)NCBI
GRCh37688,849,583 - 88,876,063 (-)NCBI
Build 36688,906,302 - 88,911,775 (-)NCBI Archive
HuRef686,064,928 - 86,090,983 (-)ENTREZGENE
CHM1_1688,947,341 - 88,952,815 (-)NCBI
T2T-CHM13v2.0689,348,358 - 89,353,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047418171   ⟹   XP_047274127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
RefSeq Acc Id: XM_047418172   ⟹   XP_047274128
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,152,129 (-)NCBI
RefSeq Acc Id: XM_047418173   ⟹   XP_047274129
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,139,864 - 88,166,347 (-)NCBI
RefSeq Acc Id: XM_054354204   ⟹   XP_054210179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
RefSeq Acc Id: XM_054354205   ⟹   XP_054210180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0689,348,358 - 89,360,624 (-)NCBI
RefSeq Acc Id: XM_054354206   ⟹   XP_054210181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0689,348,358 - 89,374,839 (-)NCBI
1 to 30 of 58 rows
Protein RefSeqs NP_001153698 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153730 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352798 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352799 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352801 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352803 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357474 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357475 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357476 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411023 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411025 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411026 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411027 (Get FASTA)   NCBI Sequence Viewer  
  NP_057167 (Get FASTA)   NCBI Sequence Viewer  
  NP_149421 (Get FASTA)   NCBI Sequence Viewer  
  XP_047274127 (Get FASTA)   NCBI Sequence Viewer  
  XP_047274128 (Get FASTA)   NCBI Sequence Viewer  
  XP_047274129 (Get FASTA)   NCBI Sequence Viewer  
  XP_054210179 (Get FASTA)   NCBI Sequence Viewer  
  XP_054210180 (Get FASTA)   NCBI Sequence Viewer  
  XP_054210181 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB18200 (Get FASTA)   NCBI Sequence Viewer  
  AAD34320 (Get FASTA)   NCBI Sequence Viewer  
  AAG37765 (Get FASTA)   NCBI Sequence Viewer  
  AAH74811 (Get FASTA)   NCBI Sequence Viewer  
  AAH74812 (Get FASTA)   NCBI Sequence Viewer  
  AAH95513 (Get FASTA)   NCBI Sequence Viewer  
  AAI00969 (Get FASTA)   NCBI Sequence Viewer  
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RefSeq Acc Id: NP_057167   ⟸   NM_016083
- Peptide Label: isoform a
- UniProtKB: Q5UB37 (UniProtKB/Swiss-Prot),   Q5JVL5 (UniProtKB/Swiss-Prot),   Q4VBM6 (UniProtKB/Swiss-Prot),   Q4PLI4 (UniProtKB/Swiss-Prot),   Q495Z0 (UniProtKB/Swiss-Prot),   Q13949 (UniProtKB/Swiss-Prot),   E1P512 (UniProtKB/Swiss-Prot),   B2R9T4 (UniProtKB/Swiss-Prot),   Q9UNN0 (UniProtKB/Swiss-Prot),   P21554 (UniProtKB/Swiss-Prot),   S5TLS4 (UniProtKB/TrEMBL),   Q506J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153698   ⟸   NM_001160226
- Peptide Label: isoform a
- UniProtKB: Q5UB37 (UniProtKB/Swiss-Prot),   Q5JVL5 (UniProtKB/Swiss-Prot),   Q4VBM6 (UniProtKB/Swiss-Prot),   Q4PLI4 (UniProtKB/Swiss-Prot),   Q495Z0 (UniProtKB/Swiss-Prot),   Q13949 (UniProtKB/Swiss-Prot),   E1P512 (UniProtKB/Swiss-Prot),   B2R9T4 (UniProtKB/Swiss-Prot),   Q9UNN0 (UniProtKB/Swiss-Prot),   P21554 (UniProtKB/Swiss-Prot),   S5TLS4 (UniProtKB/TrEMBL),   Q506J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153730   ⟸   NM_001160258
- Peptide Label: isoform a
- UniProtKB: Q5UB37 (UniProtKB/Swiss-Prot),   Q5JVL5 (UniProtKB/Swiss-Prot),   Q4VBM6 (UniProtKB/Swiss-Prot),   Q4PLI4 (UniProtKB/Swiss-Prot),   Q495Z0 (UniProtKB/Swiss-Prot),   Q13949 (UniProtKB/Swiss-Prot),   E1P512 (UniProtKB/Swiss-Prot),   B2R9T4 (UniProtKB/Swiss-Prot),   Q9UNN0 (UniProtKB/Swiss-Prot),   P21554 (UniProtKB/Swiss-Prot),   S5TLS4 (UniProtKB/TrEMBL),   Q506J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153731   ⟸   NM_001160259
- Peptide Label: isoform a
- UniProtKB: Q5UB37 (UniProtKB/Swiss-Prot),   Q5JVL5 (UniProtKB/Swiss-Prot),   Q4VBM6 (UniProtKB/Swiss-Prot),   Q4PLI4 (UniProtKB/Swiss-Prot),   Q495Z0 (UniProtKB/Swiss-Prot),   Q13949 (UniProtKB/Swiss-Prot),   E1P512 (UniProtKB/Swiss-Prot),   B2R9T4 (UniProtKB/Swiss-Prot),   Q9UNN0 (UniProtKB/Swiss-Prot),   P21554 (UniProtKB/Swiss-Prot),   S5TLS4 (UniProtKB/TrEMBL),   Q506J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_149421   ⟸   NM_033181
- Peptide Label: isoform b
- UniProtKB: V5KA96 (UniProtKB/TrEMBL),   Q506J9 (UniProtKB/TrEMBL)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-P21554-F1-model_v2 AlphaFold P21554 1-472 view protein structure

RGD ID:7208663
Promoter ID:EPDNEW_H10078
Type:initiation region
Name:CNR1_2
Description:cannabinoid receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10079  EPDNEW_H10081  EPDNEW_H10080  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,165,996 - 88,166,056EPDNEW
RGD ID:7208667
Promoter ID:EPDNEW_H10079
Type:multiple initiation site
Name:CNR1_1
Description:cannabinoid receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10078  EPDNEW_H10081  EPDNEW_H10080  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,166,347 - 88,166,407EPDNEW
RGD ID:7208673
Promoter ID:EPDNEW_H10080
Type:initiation region
Name:CNR1_3
Description:cannabinoid receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10078  EPDNEW_H10079  EPDNEW_H10081  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38688,166,652 - 88,166,712EPDNEW


1 to 40 of 61 rows
Database
Acc Id
Source(s)
COSMIC CNR1 COSMIC
Ensembl Genes ENSG00000118432 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000369499 ENTREZGENE
  ENST00000369499.3 UniProtKB/Swiss-Prot
  ENST00000369501 ENTREZGENE
  ENST00000369501.3 UniProtKB/Swiss-Prot
  ENST00000428600 ENTREZGENE
  ENST00000428600.3 UniProtKB/Swiss-Prot
  ENST00000468898 ENTREZGENE
  ENST00000468898.2 UniProtKB/Swiss-Prot
  ENST00000549890.2 UniProtKB/Swiss-Prot
  ENST00000551417 ENTREZGENE
  ENST00000551417.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
GTEx ENSG00000118432 GTEx
HGNC ID HGNC:2159 ENTREZGENE
Human Proteome Map CNR1 Human Proteome Map
InterPro Canbinoid_rcpt_1 UniProtKB/Swiss-Prot
  Cnbnoid_rcpt UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
KEGG Report hsa:1268 UniProtKB/Swiss-Prot
NCBI Gene 1268 ENTREZGENE
OMIM 114610 OMIM
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PharmGKB PA26681 PharmGKB
PIRSF Cnoid_rcpt_1 UniProtKB/Swiss-Prot
PRINTS CANABINOID1R UniProtKB/Swiss-Prot
  CANNABINOIDR UniProtKB/Swiss-Prot
  GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt B2R9T4 ENTREZGENE
  CNR1_HUMAN UniProtKB/Swiss-Prot
  E1P512 ENTREZGENE
  F8W187_HUMAN UniProtKB/TrEMBL
  F8W908_HUMAN UniProtKB/TrEMBL
1 to 40 of 61 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 CNR1  cannabinoid receptor 1  CNR1  cannabinoid receptor 1 (brain)  Symbol and/or name change 5135510 APPROVED