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Gene: Cnr1 (cannabinoid receptor 1) Ictidomys tridecemlineatus

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Symbol:

Cnr1

Name:

cannabinoid receptor 1

RGD ID:

12612496

Description:

ENCODES a protein that exhibits cannabinoid receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); learning or memory (ortholog); maternal process involved in female pregnancy (ortholog); PARTICIPATES IN N-cadherin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); Alcohol Withdrawal Delirium (ortholog); FOUND IN membrane raft (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cannabinoid receptor 1, transcript variant X1; cannabinoid receptor 1, transcript variant X2; cannabinoid receptor 1, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNR1 (cannabinoid receptor 1)	NCBI	Ortholog
Mus musculus (house mouse):	Cnr1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cnr1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cnr1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNR1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNR1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNR1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNR1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cnr1 (cannabinoid receptor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	82,664,248 - 82,691,073 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	3,781,210 - 3,802,693 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	3,779,930 - 3,806,615 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol dependence (ISO)

alcohol use disorder (ISO)

Alcohol Withdrawal Delirium (ISO)

Animal Disease Models (ISO)

anxiety disorder (ISO)

Ascites (ISO)

attention deficit hyperactivity disorder (ISO)

Binge-Eating Disorder (ISO)

cannabis abuse (ISO)

Catalepsy (ISO)

cholestasis (ISO)

cocaine dependence (ISO)

Cocaine-Related Disorders (ISO)

cognitive disorder (ISO)

developmental coordination disorder (ISO)

diabetic neuropathy (ISO)

Endometrial Neoplasms (ISO)

endometriosis (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Liver Cirrhosis (ISO)

Fever (ISO)

focal epilepsy (ISO)

glucose intolerance (ISO)

Hemorrhagic Shock (ISO)

heroin dependence (ISO)

Huntington's disease (ISO)

Hyperalgesia (ISO)

hypertension (ISO)

Hypotension (ISO)

Hypothermia (ISO)

impotence (ISO)

Insulin Resistance (ISO)

Intravenous Substance Abuse (ISO)

liver cirrhosis (ISO)

Memory Disorders (ISO)

morphine dependence (ISO)

movement disease (ISO)

multiple sclerosis (ISO)

Muscle Spasticity (ISO)

Myocardial Reperfusion Injury (ISO)

Nerve Degeneration (ISO)

obesity (ISO)

Pain (ISO)

pancreatic cancer (ISO)

pancreatitis (ISO)

Parkinsonism (ISO)

peptic ulcer disease (ISO)

post-traumatic stress disorder (ISO)

Reperfusion Injury (ISO)

rhabdomyosarcoma (ISO)

schizophrenia (ISO)

skin melanoma (ISO)

Spinal Cord Injuries (ISO)

status epilepticus (ISO)

stress-related disorder (ISO)

substance-related disorder (ISO)

systemic scleroderma (ISO)

temporal lobe epilepsy (ISO)

type 2 diabetes mellitus (ISO)

Weight Gain (ISO)

Weight Loss (ISO)

withdrawal disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-modulating G protein-coupled receptor signaling pathway (IEA)

axonal fasciculation (IEA)

cannabinoid signaling pathway (IEA)

cell communication (IEA)

G protein-coupled receptor signaling pathway (IEA,ISO)

glucose homeostasis (IEA)

learning or memory (ISO)

maternal process involved in female pregnancy (ISO)

memory (ISO)

negative regulation of action potential (ISO)

negative regulation of blood pressure (ISO)

negative regulation of dopamine secretion (ISO)

negative regulation of fatty acid beta-oxidation (ISO)

negative regulation of mast cell activation (ISO)

negative regulation of monoatomic ion transport (ISO)

negative regulation of nitric-oxide synthase activity (ISO)

negative regulation of serotonin secretion (ISO)

positive regulation of acute inflammatory response to antigenic stimulus (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of blood pressure (ISO)

positive regulation of fever generation (ISO)

positive regulation of neuron projection development (ISO)

regulation of feeding behavior (ISO)

regulation of insulin secretion (ISO)

regulation of lipid metabolic process (ISO)

regulation of long-term synaptic depression (ISO)

regulation of penile erection (ISO)

regulation of presynaptic cytosolic calcium ion concentration (IEA)

regulation of synaptic transmission, GABAergic (ISO)

regulation of synaptic transmission, glutamatergic (ISO)

response to cocaine (ISO)

response to ethanol (ISO)

response to lipopolysaccharide (ISO)

response to nicotine (ISO)

response to nutrient (ISO)

retrograde trans-synaptic signaling by endocannabinoid (IEA)

signal transduction (IEA)

signaling (IEA)

spermatogenesis (ISO)

Cellular Component

actin cytoskeleton (IEA)

axon (IEA)

cell projection (IEA)

GABA-ergic synapse (IEA)

glutamatergic synapse (IEA)

growth cone (IEA)

membrane (IEA)

membrane raft (ISO)

mitochondrial outer membrane (IEA)

mitochondrion (IEA)

plasma membrane (IEA)

presynapse (IEA)

presynaptic membrane (IEA)

synapse (IEA)

Molecular Function

cannabinoid receptor activity (IEA,ISO)

G protein-coupled receptor activity (IEA)

identical protein binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

N-cadherin signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cnr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	82,664,248 - 82,691,073 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936510	3,781,210 - 3,802,693 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936510	3,779,930 - 3,806,615 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	88,139,864 - 88,167,349 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	88,139,864 - 88,166,347 (-)	Ensembl			hg38	GRCh38
GRCh37	6	88,849,583 - 88,877,068 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	88,906,302 - 88,911,775 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	88,906,301 - 88,911,775	NCBI
Celera	6	89,267,475 - 89,293,659 (-)	NCBI		Celera
Cytogenetic Map	6	q15	NCBI
HuRef	6	86,064,928 - 86,090,983 (-)	NCBI		HuRef
CHM1_1	6	88,947,341 - 88,973,526 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	89,348,358 - 89,375,841 (-)	NCBI		T2T-CHM13v2.0

Cnr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	33,923,171 - 33,948,831 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	33,924,593 - 33,948,831 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	33,923,171 - 33,948,831 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	33,924,593 - 33,948,831 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	34,011,607 - 34,035,806 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	34,253,245 - 34,277,444 (+)	NCBI		MGSCv36	mm8
Celera	4	33,679,304 - 33,703,476 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	16.28	NCBI

Cnr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	53,204,867 - 53,230,396 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	53,204,260 - 53,239,252 (+)	Ensembl				GRCr8
mRatBN7.2	5	48,408,543 - 48,436,099 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	48,408,574 - 48,435,099 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	50,575,033 - 50,597,155 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	52,174,251 - 52,196,375 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	52,110,881 - 52,132,920 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	49,307,584 - 49,333,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	49,311,030 - 49,333,056 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	53,878,619 - 53,904,013 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	50,427,173 - 50,445,471 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	47,168,709 - 47,190,724 (+)	NCBI		Celera
RGSC_v3.1	5	50,427,351 - 50,445,650 (+)	NCBI
Cytogenetic Map	5	q21	NCBI

Cnr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	15,052,163 - 15,077,320 (-)	Ensembl
ChiLan1.0	NW_004955411	15,052,151 - 15,077,320 (-)	NCBI	ChiLan1.0	ChiLan1.0

CNR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	108,222,001 - 108,249,883 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	106,115,872 - 106,143,699 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	86,017,141 - 86,044,889 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	89,289,102 - 89,315,174 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CNR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	47,537,240 - 47,560,723 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	47,509,583 - 47,560,983 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	47,344,588 - 47,368,064 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	48,342,012 - 48,365,459 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	48,346,226 - 48,363,768 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	47,639,694 - 47,663,171 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	47,561,070 - 47,584,546 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	47,752,753 - 47,776,234 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CNR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	56,467,835 - 56,492,602 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	56,466,022 - 56,493,275 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	63,201,796 - 63,224,939 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	12,626,259 - 12,653,253 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	12,630,270 - 12,631,688 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	188,875,655 - 188,902,692 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624799	6,101,728 - 6,126,520 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624799	6,100,709 - 6,126,530 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY303194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000020145 ⟹ ENSSTOP00000022582

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936510	3,781,210 - 3,802,693 (+)	Ensembl

RefSeq Acc Id:

XM_005324720 ⟹ XP_005324777

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	82,664,248 - 82,690,036 (-)	NCBI
SpeTri2.0	NW_004936510	3,781,149 - 3,806,615 (+)	NCBI

Sequence:

show sequence

GGACAAAGGCTCATTAACACGTGATGGGACCGCGCTTCATAAATGGGACTGAGAGGGAGCCAGA
GGCAGAGCGCGAGCGGAGGGAGAGGCAGGGACCACGCGAGCAGGGCGAGGCGACGGGCGCTCAG
GCTGGCGGAGACGGGCGGCCCCACGCCGGGCCAGGCGGGGCCAGCGGGAGGACCCAGTGAAGAG
CCCGAGAAAGGGGCGAGGCTCAGTGGCAGCCGGAGCGGAGGGGGCGCCAGTCCGCGTTACTGTC
GCGGGCAGGCGCTGGAGGCAGGGGACGCCGGCGCGCGGACCGACTGACTTACTGACCGACCGCT
GGAGGCACACCCCGCTCCACCCCGCCGGCGCCACCTCCCCACGCTACTCCCTCAGCCACCCCTT
CCTTCTCCACTTCTTTTCCGCCTCCGCTTCTTCTAGGCTCCCGCGGAGCCTGTGCCTTCCCCTG
GCCCAGGCGGGGCGCCTCGACTCCCTGCAGAGCTCTCCATAGAGTCAGGGGGGACGCTTCCTTC
TAGCGGAGAACCTACCCCTGAGCTGGGCGAGAGGTGCTGAGGGAGCTTCTGCCCTGAGGATCAG
GGGATGCGAAGGGATCCCCTCCTGCGATCTCTTTCCCAGTCACTTTGAGTCTGGCCTAACCGAA
GGCTGAGGTTATGAAGTCGATCCTAGATGGCCTTGCAGATACCACCTTCCGCACCATCACCACA
GACCTCCTCTACGTGGGCTCGAATGACATCCAGTACGAAGACATCAAAGGCGACATGGCATCCA
AATTAGGGTACTTCCCACAGAAATTTCCTTTAACTTCTTTTAGGGGCAGTCCCTTCCAAGAAAA
GATGACTGCAGGAGACAACTCCCAGTTAGTCCCAGTAGACCCGGGAAACAACATTACAGAATTC
TACAACAAGTCGCTCTCATCCTACAAGGAGAATGAGGAGAATATCCAGTGTGGGGAGAACTTCA
TGGACATGGAGTGCTTCATGATTCTGAACCCCAGCCAACAGCTGGCCATCGCAGTGCTGTCCCT
CACACTGGGCACCTTCACGGTTCTGGAGAACCTGCTGGTGCTCTGTGTCATCCTCCACTCCCGT
AGCCTCCGCTGCAGGCCTTCCTATCACTTCATTGGCAGCCTGGCAGTGGCAGACCTTCTGGGGA
GTGTCATTTTCGTCTACAGCTTCGTTGACTTCCACGTGTTCCACCGCAAAGATAGCCCCAACGT
GTTTCTCTTCAAACTGGGTGGGGTCACAGCCTCCTTCACTGCCTCTGTAGGCAGCCTGTTCCTC
ACGGCCATCGACAGGTACATATCTATTCACAGGCCCCTGGCCTATAAGAGAATCGTCACCAGGC
CCAAAGCCGTGGTGGCCTTTTGCCTGATGTGGACCATCGCGATTGTAATTGCTGTGCTGCCTCT
CCTGGGTTGGAACTGCAAGAAACTGCAATCTGTCTGCTCAGATATTTTCCCACTGATTGATGAA
ACCTACCTGATGTTCTGGATCGGGGTCACCAGCGTGCTGCTGCTGTTCATTGTGTACGCATACA
TGTATATTCTCTGGAAAGCTCACAGCCACGCAGTCCGCATGATTCAACGTGGAACTCAGAAAAG
CATCATCATCCACACGTCAGAGGATGGCAAGGTACAGGTGACCCGGCCGGACCAAGCCCGCATG
GACATTAGACTGGCCAAGACCCTGGTCCTGATCCTGGTGGTTTTGATCATCTGCTGGGGCCCTC
TGCTCGCGATCATGGTGTACGATGTCTTCGGGAAGATGAACAAGCTCATTAAGACGGTGTTTGC
CTTCTGCAGTATGCTCTGCCTGCTGAACTCCACCGTGAACCCCATCATCTATGCTCTGAGGAGC
AAGGACCTGAGACATGCTTTCCGGAGCATGTTCCCCTCATGTGAAGGCACTGCGCAGCCTCTGG
ATAACAGCATGGGGGACTCGGACTGCCTGCACAAGCATGCGAACAACACAGCCAGTGTTCACAG
GGCTGCAGAAAGCTGCATCAAGAGCACGGTCAAGATCGCCAAGGTGACCATGTCTGTGTCCACA
GACACGTCCGCCGAGGCTCTGTGAGCCTGATGCCTCTCTGGCAACACAGGAAAAGAAATTCATT
TTTTTTTTTTTTAAGCTCAAAACCTAGAAGAGTCTGTCGTCTCATCGGTTATATTTTTTTAAGT
TTACCATGCTCAGTGAAAAGGTGATTGTCACCATGCTCATTTATCAGTTCGTTGACATTTCAAT
AGTTTAGGTACTCAAACTCTGTTCTCCAGGGGTTTACAGTGAAGAAAGCCTGTTGCTCAAGTGA
CTGAATGGTCCTTCAAAGTCTCAACGAAATAGGAGGGAAACCTTTGGCTACATGATTTTAAGTC
TAAAGTACCCATAGAAAAATGCCATCAGATGAGTAATGCCTTTGTAACCACAACTTTCATTATA
AATGTGACGTGTATTTGTTCATAGTATCAGAGGTGTCAATTTTTACAACAGTTATAGTACTAAA
GTAGAGATATTTTGTAAAATGTATTGTGTCCTGTGAGTTGTGTGTCAGTGTTTCCTATGTGTTG
TGTAAATTTGTCTAGTTAAGCAAAACCAAAAGGTTGACTTTTATGAGAACAATGGAACACAGCA
GTGGATATATGCCAATGAGACCACTTTTCAAAAGTATTATTGCCCATGATCTAACTTTAGAAAC
CTTAATATTTCTTGAAATATCTAAATTTGACACTGAGATACCTAAAGGTTTATTTTTTCTCTTA
AGACAACAAGAAGAATTTGAAGACTGTTCAAAGTATTGAGCAGAATTCATTGACACTTAAAAAT
TGGTTAGCCCTGCATTTTCATAAGAGGACACTTATCTTCTGGATCGTAGATTCTGTTGGGTAAT
GGATTATAATCAGAATGGAAGCGAGAAAGCATATTGACTTTTTTTAGGCTGACATCTCTGACTT
TCTTTAGTCGTTAGCTAATTACTGAACCTCTTAAGACAGCATGTGTCAATCTTAATGTATATTG
TATCACTGTGCAGTTGCTGTTTACTTGAAGAGTATTGCATTCTTCTATTCCAAGTGTAAGTAGA
TTCCATCCCTGGGTGGTCAAATAATAGTCTTTTTTTTTTTTTAAATCAAAGTATTGTCTGGATC
AGTAAAATTATACTGTGTGTGAATGTGAATATAAATGTGTGTATATGTATGTGTGTTTCTATCT
TGTACTGTTAACAGCAGTGTCATAAAGTGAGACAACTGTGACCAAATGTAAACTGTACCACTTG
CTGCACTCTTGCACATGAATTCAGTTTCTAAAATTGAGTTCTTCCAGAAATCTTCTGATAAAAA
TTCTGAGAAAATCATTCAGAGAAAATTCTCCTCCTTAAGAGAGAGAGATTGAATTAATAAATTG
ACCTTTAGATATTATGTGAGACCAGTTCATAACAAGAAATAATCGATGACAGGTTCCCAAGTAA
AGGTTTGTATTTACAGTATTACTGTGGGGAAAATGAGAGTGTTTGGGTTTCTGAGCACCTAATA
TTTATCAAGGTTATGGAGATATAGATCATTAAAAAGTAAGATGGTTCTAAAATCCCCAAACAGT
AACGTTCTTTAGTTTGTGTATAGGTAGTGTGACCCAAGTTTCATCAGCATGGTATACCTCACAC
TACAGTAGCACTGCCAGGTCCAGGTCATGTGGCTTAGGGAGGCTGAATCCAACAGTGGCAGTGA
AGAGCCACCACACCTGGGACTGAGGCCTGGGTCATGGATGCTGTTTCTCTGCTTTGCCCAGATG
TCCTTGGTGTTAGTCAATGTGGAATAGCCTTTTCCTCTGCTTCCTGGTGGCAAGATATGCTAAA
GCCTAAGCTGGCTTGCTTTCTACTGATGCCCCAATCTCAGACTCCTTAATGGTACCATGGGTGC
TCAGAATTGAACCCTTTTCCAGTAAGGAAAGATACTGCTTAAGAAGCCACTTAACCCTGACAAA
CTTTACTTATAATCTCTCCTTAAACAGAAAAAGCATGACTCCTAGAGAACATGAGGCCTGCATT
GCATGAAAGTGAAGACCTAGTGTCTATCTGGTTACTTCTAGCTCTCATGATACCCCAGAAGCCT
GGTGGGGTGGTTCCACTTCTTGCAGTTTATGTTCTAAGATGGAGTGGGGCCCATGGACCAAGCT
AGGATTTAGCTAGAATCTGCCTGTTGGCTTCCTCACTTTACCTCTGTGTGAAATGAAGCAAGGG
CTCAGGGTGCTGGAGGATTAAGATCTCTTTAGAAGGAAAGAAAATGATTGACATAAAAGGATTC
ACCAGAGACTAGTTTCCATTTAAGAATTTCCAGTCTTTTGTCCTGGGTCACTCTAAATATTAAT
CTGCATGTCTTAGAGCTCACCAGGCAGTACCAACTCTTTTCTCACAGCTATAAAGACCTGGTGG
AGAGGAAATTCTTATCATAGATATAAAAAAAATTCAGAATTCATTTTTGAAACTGTATTTGTGT
GAATGCCATGTAGATTTTTTAGTGCGTTGTGCTTTTAAGACCTAAATCATATATAATAAATTAA
GGGACAATGGGGCTGACAGCACTAAACTCGGTGCTTATTGATATTTTAAGAAATATCTGTGAAA
TATCATCACGTGTGTGTTATACTACCTTCATTTAAAAACGTTTAAAATGAGTTGGATTCACTTT
GACACTTCTCATATCATTTCCTAACCCAAGTGACTAAGATGTTCTCCCCAATGAATATACTCAT
TAGAATTACCATTCATTAGAATCATTCATTAGCTGATCCCTTAATTATATCCATTAATTTAAAT
ACAGTTTAAATTTAAGTATTTATAAGCTCTGGCATCAGAGTCCTCTACTGTCCCCCTAAGATGA
CATATTTGTCCTCACCGTGCATCCTGTCATCACTTGTCTTCAGAAAGGGCCAAATTCCCAGCCC
ACTCAATTTCTTCATAATAATGATGATGATTCAGTCCTAGACTAGCAGTTTCATTTAGAACAGT
CAGGTTGTCTCCAAGAACCTCTAATTTTTCATTACATATTAAATATATGTAAAAGAAATTAGAT
CTGGGAGATGCTGCAGTCACATACCTGCAATTGAGATGATTCCCAGACTTCCCTGGCACTTTCA
GTCAGTTCTGTCTGGTATTAAATGTCCAGGATTTTTTTGCTGCCTAAACCCACTTTGCAGGAAA
GAGGCCCAACCACCAAATGAGAATCAGGCCCTCGATGAGTAGCACTCTAGTTACGGTCCTGTTG
ATTAATTTTTGCCATTCCACATCTGTAAAAGAGACCACCAATATCATGCACAAAATTAGATTTC
TCATACTCTAACTGTATATTTGTATGATATTTTAAAATCTCCGAAATGCTGGGCAATGGCTGTT
CACAATCGTCTTGCACTGGCCTTCTGATGGAGTGTTAACAATGCCTATTGTAATATAGACAAAA
GACTCTGGGCTGAATGTATGTATATAGGTTTTAAAGGGTCAGATGTTTAAGGAGTGGCTTACAA
ATCAGTACTTTTCAGATAGGAGAGTTTCTTTACATTGCTGTGGCATCCTAAAAGCTCTCTTCAT
GTAATCTTACTGGACTAGGCCTCCTGGGGATCAGAGTCCCCAAGAAAGAAAACTTTTTCTTGTG
ATAGTATGAATCAAGATACCAGATTATCTGGATTTTTATTTCCAGTGTTTCAAGTGGAAAATGT
AACTCTTTATTGTCTGTAAATCTAACATTATTACTTTTCCTCTTAGAAGAATATTGTATTGTTA
GATGTTTGTTGAACTGGTAATATCCTTGCAACCGCTGTAATATCTTCGTTAGTAATCTGTATAA
TACCTTGTATACAAGTAATGGTAAGATTGTTATTAAATGTAGCTTCAGTCATTAAATAACTATA
GCAAAGTAGTACTTCTGTAATATTTACAATGTATTAAGCCCATAGTATATTTTATTTCATTGAT
GTAATTTAACTGTTATTTATTCAAGAGAAAACATTTCATCCTGTCTATTGTCCAAAGTTACCTG
GAATCAAATAAAATTCTAGATTATCATGAAGAACA

hide sequence

RefSeq Acc Id:

XM_021726015 ⟹ XP_021581690

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	82,664,248 - 82,690,708 (-)	NCBI
SpeTri2.0	NW_004936510	3,779,930 - 3,806,615 (+)	NCBI

Sequence:

show sequence

CAACTGCCCTTGGCAGGGCCCCTGGGGCCGAAGTGAAGTGGCTCCATCAGGTGGAAACCGCGCA
GTTCTGTCTTACCCAACTTACGAGAGATCAAGATATCTAAATAAGCACGGCCGCTGCCGCCACA
ACCCTGTCCGAGACCCGGGAAGGGGGAGGAGAAGCGCCCATCTCGGCTGAAGCCGCGGCTGGGG
TTTGTTTGTAGGTTCGCAATTCACCATGATAAATGTAAAGACCAATTAAGGTTTGATCCGTGCA
CACGGGAGGCAGACGGCGGCTGATAGTGGAACCAATTAACGAGCATGTCCCCTAATTTCTGCCG
CGGCCGCCGGGCGCACCGCGGATCCCCAGGCGCCCGTGACGGCCACCCCCGAACCCCGAGAGGC
TCCCCTGCCAGGCCCTGGAGGGGTGCGTCCTCCGCCAGCAAGAAGGATCCCCTCCTGCGATCTC
TTTCCCAGTCACTTTGAGTCTGGCCTAACCGAAGGCTGAGGTTATGAAGTCGATCCTAGATGGC
CTTGCAGATACCACCTTCCGCACCATCACCACAGACCTCCTCTACGTGGGCTCGAATGACATCC
AGTACGAAGACATCAAAGGCGACATGGCATCCAAATTAGGGTACTTCCCACAGAAATTTCCTTT
AACTTCTTTTAGGGGCAGTCCCTTCCAAGAAAAGATGACTGCAGGAGACAACTCCCAGTTAGTC
CCAGTAGACCCGGGAAACAACATTACAGAATTCTACAACAAGTCGCTCTCATCCTACAAGGAGA
ATGAGGAGAATATCCAGTGTGGGGAGAACTTCATGGACATGGAGTGCTTCATGATTCTGAACCC
CAGCCAACAGCTGGCCATCGCAGTGCTGTCCCTCACACTGGGCACCTTCACGGTTCTGGAGAAC
CTGCTGGTGCTCTGTGTCATCCTCCACTCCCGTAGCCTCCGCTGCAGGCCTTCCTATCACTTCA
TTGGCAGCCTGGCAGTGGCAGACCTTCTGGGGAGTGTCATTTTCGTCTACAGCTTCGTTGACTT
CCACGTGTTCCACCGCAAAGATAGCCCCAACGTGTTTCTCTTCAAACTGGGTGGGGTCACAGCC
TCCTTCACTGCCTCTGTAGGCAGCCTGTTCCTCACGGCCATCGACAGGTACATATCTATTCACA
GGCCCCTGGCCTATAAGAGAATCGTCACCAGGCCCAAAGCCGTGGTGGCCTTTTGCCTGATGTG
GACCATCGCGATTGTAATTGCTGTGCTGCCTCTCCTGGGTTGGAACTGCAAGAAACTGCAATCT
GTCTGCTCAGATATTTTCCCACTGATTGATGAAACCTACCTGATGTTCTGGATCGGGGTCACCA
GCGTGCTGCTGCTGTTCATTGTGTACGCATACATGTATATTCTCTGGAAAGCTCACAGCCACGC
AGTCCGCATGATTCAACGTGGAACTCAGAAAAGCATCATCATCCACACGTCAGAGGATGGCAAG
GTACAGGTGACCCGGCCGGACCAAGCCCGCATGGACATTAGACTGGCCAAGACCCTGGTCCTGA
TCCTGGTGGTTTTGATCATCTGCTGGGGCCCTCTGCTCGCGATCATGGTGTACGATGTCTTCGG
GAAGATGAACAAGCTCATTAAGACGGTGTTTGCCTTCTGCAGTATGCTCTGCCTGCTGAACTCC
ACCGTGAACCCCATCATCTATGCTCTGAGGAGCAAGGACCTGAGACATGCTTTCCGGAGCATGT
TCCCCTCATGTGAAGGCACTGCGCAGCCTCTGGATAACAGCATGGGGGACTCGGACTGCCTGCA
CAAGCATGCGAACAACACAGCCAGTGTTCACAGGGCTGCAGAAAGCTGCATCAAGAGCACGGTC
AAGATCGCCAAGGTGACCATGTCTGTGTCCACAGACACGTCCGCCGAGGCTCTGTGAGCCTGAT
GCCTCTCTGGCAACACAGGAAAAGAAATTCATTTTTTTTTTTTTTAAGCTCAAAACCTAGAAGA
GTCTGTCGTCTCATCGGTTATATTTTTTTAAGTTTACCATGCTCAGTGAAAAGGTGATTGTCAC
CATGCTCATTTATCAGTTCGTTGACATTTCAATAGTTTAGGTACTCAAACTCTGTTCTCCAGGG
GTTTACAGTGAAGAAAGCCTGTTGCTCAAGTGACTGAATGGTCCTTCAAAGTCTCAACGAAATA
GGAGGGAAACCTTTGGCTACATGATTTTAAGTCTAAAGTACCCATAGAAAAATGCCATCAGATG
AGTAATGCCTTTGTAACCACAACTTTCATTATAAATGTGACGTGTATTTGTTCATAGTATCAGA
GGTGTCAATTTTTACAACAGTTATAGTACTAAAGTAGAGATATTTTGTAAAATGTATTGTGTCC
TGTGAGTTGTGTGTCAGTGTTTCCTATGTGTTGTGTAAATTTGTCTAGTTAAGCAAAACCAAAA
GGTTGACTTTTATGAGAACAATGGAACACAGCAGTGGATATATGCCAATGAGACCACTTTTCAA
AAGTATTATTGCCCATGATCTAACTTTAGAAACCTTAATATTTCTTGAAATATCTAAATTTGAC
ACTGAGATACCTAAAGGTTTATTTTTTCTCTTAAGACAACAAGAAGAATTTGAAGACTGTTCAA
AGTATTGAGCAGAATTCATTGACACTTAAAAATTGGTTAGCCCTGCATTTTCATAAGAGGACAC
TTATCTTCTGGATCGTAGATTCTGTTGGGTAATGGATTATAATCAGAATGGAAGCGAGAAAGCA
TATTGACTTTTTTTAGGCTGACATCTCTGACTTTCTTTAGTCGTTAGCTAATTACTGAACCTCT
TAAGACAGCATGTGTCAATCTTAATGTATATTGTATCACTGTGCAGTTGCTGTTTACTTGAAGA
GTATTGCATTCTTCTATTCCAAGTGTAAGTAGATTCCATCCCTGGGTGGTCAAATAATAGTCTT
TTTTTTTTTTTAAATCAAAGTATTGTCTGGATCAGTAAAATTATACTGTGTGTGAATGTGAATA
TAAATGTGTGTATATGTATGTGTGTTTCTATCTTGTACTGTTAACAGCAGTGTCATAAAGTGAG
ACAACTGTGACCAAATGTAAACTGTACCACTTGCTGCACTCTTGCACATGAATTCAGTTTCTAA
AATTGAGTTCTTCCAGAAATCTTCTGATAAAAATTCTGAGAAAATCATTCAGAGAAAATTCTCC
TCCTTAAGAGAGAGAGATTGAATTAATAAATTGACCTTTAGATATTATGTGAGACCAGTTCATA
ACAAGAAATAATCGATGACAGGTTCCCAAGTAAAGGTTTGTATTTACAGTATTACTGTGGGGAA
AATGAGAGTGTTTGGGTTTCTGAGCACCTAATATTTATCAAGGTTATGGAGATATAGATCATTA
AAAAGTAAGATGGTTCTAAAATCCCCAAACAGTAACGTTCTTTAGTTTGTGTATAGGTAGTGTG
ACCCAAGTTTCATCAGCATGGTATACCTCACACTACAGTAGCACTGCCAGGTCCAGGTCATGTG
GCTTAGGGAGGCTGAATCCAACAGTGGCAGTGAAGAGCCACCACACCTGGGACTGAGGCCTGGG
TCATGGATGCTGTTTCTCTGCTTTGCCCAGATGTCCTTGGTGTTAGTCAATGTGGAATAGCCTT
TTCCTCTGCTTCCTGGTGGCAAGATATGCTAAAGCCTAAGCTGGCTTGCTTTCTACTGATGCCC
CAATCTCAGACTCCTTAATGGTACCATGGGTGCTCAGAATTGAACCCTTTTCCAGTAAGGAAAG
ATACTGCTTAAGAAGCCACTTAACCCTGACAAACTTTACTTATAATCTCTCCTTAAACAGAAAA
AGCATGACTCCTAGAGAACATGAGGCCTGCATTGCATGAAAGTGAAGACCTAGTGTCTATCTGG
TTACTTCTAGCTCTCATGATACCCCAGAAGCCTGGTGGGGTGGTTCCACTTCTTGCAGTTTATG
TTCTAAGATGGAGTGGGGCCCATGGACCAAGCTAGGATTTAGCTAGAATCTGCCTGTTGGCTTC
CTCACTTTACCTCTGTGTGAAATGAAGCAAGGGCTCAGGGTGCTGGAGGATTAAGATCTCTTTA
GAAGGAAAGAAAATGATTGACATAAAAGGATTCACCAGAGACTAGTTTCCATTTAAGAATTTCC
AGTCTTTTGTCCTGGGTCACTCTAAATATTAATCTGCATGTCTTAGAGCTCACCAGGCAGTACC
AACTCTTTTCTCACAGCTATAAAGACCTGGTGGAGAGGAAATTCTTATCATAGATATAAAAAAA
ATTCAGAATTCATTTTTGAAACTGTATTTGTGTGAATGCCATGTAGATTTTTTAGTGCGTTGTG
CTTTTAAGACCTAAATCATATATAATAAATTAAGGGACAATGGGGCTGACAGCACTAAACTCGG
TGCTTATTGATATTTTAAGAAATATCTGTGAAATATCATCACGTGTGTGTTATACTACCTTCAT
TTAAAAACGTTTAAAATGAGTTGGATTCACTTTGACACTTCTCATATCATTTCCTAACCCAAGT
GACTAAGATGTTCTCCCCAATGAATATACTCATTAGAATTACCATTCATTAGAATCATTCATTA
GCTGATCCCTTAATTATATCCATTAATTTAAATACAGTTTAAATTTAAGTATTTATAAGCTCTG
GCATCAGAGTCCTCTACTGTCCCCCTAAGATGACATATTTGTCCTCACCGTGCATCCTGTCATC
ACTTGTCTTCAGAAAGGGCCAAATTCCCAGCCCACTCAATTTCTTCATAATAATGATGATGATT
CAGTCCTAGACTAGCAGTTTCATTTAGAACAGTCAGGTTGTCTCCAAGAACCTCTAATTTTTCA
TTACATATTAAATATATGTAAAAGAAATTAGATCTGGGAGATGCTGCAGTCACATACCTGCAAT
TGAGATGATTCCCAGACTTCCCTGGCACTTTCAGTCAGTTCTGTCTGGTATTAAATGTCCAGGA
TTTTTTTGCTGCCTAAACCCACTTTGCAGGAAAGAGGCCCAACCACCAAATGAGAATCAGGCCC
TCGATGAGTAGCACTCTAGTTACGGTCCTGTTGATTAATTTTTGCCATTCCACATCTGTAAAAG
AGACCACCAATATCATGCACAAAATTAGATTTCTCATACTCTAACTGTATATTTGTATGATATT
TTAAAATCTCCGAAATGCTGGGCAATGGCTGTTCACAATCGTCTTGCACTGGCCTTCTGATGGA
GTGTTAACAATGCCTATTGTAATATAGACAAAAGACTCTGGGCTGAATGTATGTATATAGGTTT
TAAAGGGTCAGATGTTTAAGGAGTGGCTTACAAATCAGTACTTTTCAGATAGGAGAGTTTCTTT
ACATTGCTGTGGCATCCTAAAAGCTCTCTTCATGTAATCTTACTGGACTAGGCCTCCTGGGGAT
CAGAGTCCCCAAGAAAGAAAACTTTTTCTTGTGATAGTATGAATCAAGATACCAGATTATCTGG
ATTTTTATTTCCAGTGTTTCAAGTGGAAAATGTAACTCTTTATTGTCTGTAAATCTAACATTAT
TACTTTTCCTCTTAGAAGAATATTGTATTGTTAGATGTTTGTTGAACTGGTAATATCCTTGCAA
CCGCTGTAATATCTTCGTTAGTAATCTGTATAATACCTTGTATACAAGTAATGGTAAGATTGTT
ATTAAATGTAGCTTCAGTCATTAAATAACTATAGCAAAGTAGTACTTCTGTAATATTTACAATG
TATTAAGCCCATAGTATATTTTATTTCATTGATGTAATTTAACTGTTATTTATTCAAGAGAAAA
CATTTCATCCTGTCTATTGTCCAAAGTTACCTGGAATCAAATAAAATTCTAGATTATCATGAAG
AACA

hide sequence

RefSeq Acc Id:

XM_021726016 ⟹ XP_021581691

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	82,664,248 - 82,690,406 (-)	NCBI
SpeTri2.0	NW_004936510	3,780,562 - 3,806,615 (+)	NCBI

Sequence:

show sequence

GTGGCCCCGCAGCCGCAGCCAGGATCCCCTCCTGCGATCTCTTTCCCAGTCACTTTGAGTCTGG
CCTAACCGAAGGCTGAGGTTATGAAGTCGATCCTAGATGGCCTTGCAGATACCACCTTCCGCAC
CATCACCACAGACCTCCTCTACGTGGGCTCGAATGACATCCAGTACGAAGACATCAAAGGCGAC
ATGGCATCCAAATTAGGGTACTTCCCACAGAAATTTCCTTTAACTTCTTTTAGGGGCAGTCCCT
TCCAAGAAAAGATGACTGCAGGAGACAACTCCCAGTTAGTCCCAGTAGACCCGGGAAACAACAT
TACAGAATTCTACAACAAGTCGCTCTCATCCTACAAGGAGAATGAGGAGAATATCCAGTGTGGG
GAGAACTTCATGGACATGGAGTGCTTCATGATTCTGAACCCCAGCCAACAGCTGGCCATCGCAG
TGCTGTCCCTCACACTGGGCACCTTCACGGTTCTGGAGAACCTGCTGGTGCTCTGTGTCATCCT
CCACTCCCGTAGCCTCCGCTGCAGGCCTTCCTATCACTTCATTGGCAGCCTGGCAGTGGCAGAC
CTTCTGGGGAGTGTCATTTTCGTCTACAGCTTCGTTGACTTCCACGTGTTCCACCGCAAAGATA
GCCCCAACGTGTTTCTCTTCAAACTGGGTGGGGTCACAGCCTCCTTCACTGCCTCTGTAGGCAG
CCTGTTCCTCACGGCCATCGACAGGTACATATCTATTCACAGGCCCCTGGCCTATAAGAGAATC
GTCACCAGGCCCAAAGCCGTGGTGGCCTTTTGCCTGATGTGGACCATCGCGATTGTAATTGCTG
TGCTGCCTCTCCTGGGTTGGAACTGCAAGAAACTGCAATCTGTCTGCTCAGATATTTTCCCACT
GATTGATGAAACCTACCTGATGTTCTGGATCGGGGTCACCAGCGTGCTGCTGCTGTTCATTGTG
TACGCATACATGTATATTCTCTGGAAAGCTCACAGCCACGCAGTCCGCATGATTCAACGTGGAA
CTCAGAAAAGCATCATCATCCACACGTCAGAGGATGGCAAGGTACAGGTGACCCGGCCGGACCA
AGCCCGCATGGACATTAGACTGGCCAAGACCCTGGTCCTGATCCTGGTGGTTTTGATCATCTGC
TGGGGCCCTCTGCTCGCGATCATGGTGTACGATGTCTTCGGGAAGATGAACAAGCTCATTAAGA
CGGTGTTTGCCTTCTGCAGTATGCTCTGCCTGCTGAACTCCACCGTGAACCCCATCATCTATGC
TCTGAGGAGCAAGGACCTGAGACATGCTTTCCGGAGCATGTTCCCCTCATGTGAAGGCACTGCG
CAGCCTCTGGATAACAGCATGGGGGACTCGGACTGCCTGCACAAGCATGCGAACAACACAGCCA
GTGTTCACAGGGCTGCAGAAAGCTGCATCAAGAGCACGGTCAAGATCGCCAAGGTGACCATGTC
TGTGTCCACAGACACGTCCGCCGAGGCTCTGTGAGCCTGATGCCTCTCTGGCAACACAGGAAAA
GAAATTCATTTTTTTTTTTTTTAAGCTCAAAACCTAGAAGAGTCTGTCGTCTCATCGGTTATAT
TTTTTTAAGTTTACCATGCTCAGTGAAAAGGTGATTGTCACCATGCTCATTTATCAGTTCGTTG
ACATTTCAATAGTTTAGGTACTCAAACTCTGTTCTCCAGGGGTTTACAGTGAAGAAAGCCTGTT
GCTCAAGTGACTGAATGGTCCTTCAAAGTCTCAACGAAATAGGAGGGAAACCTTTGGCTACATG
ATTTTAAGTCTAAAGTACCCATAGAAAAATGCCATCAGATGAGTAATGCCTTTGTAACCACAAC
TTTCATTATAAATGTGACGTGTATTTGTTCATAGTATCAGAGGTGTCAATTTTTACAACAGTTA
TAGTACTAAAGTAGAGATATTTTGTAAAATGTATTGTGTCCTGTGAGTTGTGTGTCAGTGTTTC
CTATGTGTTGTGTAAATTTGTCTAGTTAAGCAAAACCAAAAGGTTGACTTTTATGAGAACAATG
GAACACAGCAGTGGATATATGCCAATGAGACCACTTTTCAAAAGTATTATTGCCCATGATCTAA
CTTTAGAAACCTTAATATTTCTTGAAATATCTAAATTTGACACTGAGATACCTAAAGGTTTATT
TTTTCTCTTAAGACAACAAGAAGAATTTGAAGACTGTTCAAAGTATTGAGCAGAATTCATTGAC
ACTTAAAAATTGGTTAGCCCTGCATTTTCATAAGAGGACACTTATCTTCTGGATCGTAGATTCT
GTTGGGTAATGGATTATAATCAGAATGGAAGCGAGAAAGCATATTGACTTTTTTTAGGCTGACA
TCTCTGACTTTCTTTAGTCGTTAGCTAATTACTGAACCTCTTAAGACAGCATGTGTCAATCTTA
ATGTATATTGTATCACTGTGCAGTTGCTGTTTACTTGAAGAGTATTGCATTCTTCTATTCCAAG
TGTAAGTAGATTCCATCCCTGGGTGGTCAAATAATAGTCTTTTTTTTTTTTTAAATCAAAGTAT
TGTCTGGATCAGTAAAATTATACTGTGTGTGAATGTGAATATAAATGTGTGTATATGTATGTGT
GTTTCTATCTTGTACTGTTAACAGCAGTGTCATAAAGTGAGACAACTGTGACCAAATGTAAACT
GTACCACTTGCTGCACTCTTGCACATGAATTCAGTTTCTAAAATTGAGTTCTTCCAGAAATCTT
CTGATAAAAATTCTGAGAAAATCATTCAGAGAAAATTCTCCTCCTTAAGAGAGAGAGATTGAAT
TAATAAATTGACCTTTAGATATTATGTGAGACCAGTTCATAACAAGAAATAATCGATGACAGGT
TCCCAAGTAAAGGTTTGTATTTACAGTATTACTGTGGGGAAAATGAGAGTGTTTGGGTTTCTGA
GCACCTAATATTTATCAAGGTTATGGAGATATAGATCATTAAAAAGTAAGATGGTTCTAAAATC
CCCAAACAGTAACGTTCTTTAGTTTGTGTATAGGTAGTGTGACCCAAGTTTCATCAGCATGGTA
TACCTCACACTACAGTAGCACTGCCAGGTCCAGGTCATGTGGCTTAGGGAGGCTGAATCCAACA
GTGGCAGTGAAGAGCCACCACACCTGGGACTGAGGCCTGGGTCATGGATGCTGTTTCTCTGCTT
TGCCCAGATGTCCTTGGTGTTAGTCAATGTGGAATAGCCTTTTCCTCTGCTTCCTGGTGGCAAG
ATATGCTAAAGCCTAAGCTGGCTTGCTTTCTACTGATGCCCCAATCTCAGACTCCTTAATGGTA
CCATGGGTGCTCAGAATTGAACCCTTTTCCAGTAAGGAAAGATACTGCTTAAGAAGCCACTTAA
CCCTGACAAACTTTACTTATAATCTCTCCTTAAACAGAAAAAGCATGACTCCTAGAGAACATGA
GGCCTGCATTGCATGAAAGTGAAGACCTAGTGTCTATCTGGTTACTTCTAGCTCTCATGATACC
CCAGAAGCCTGGTGGGGTGGTTCCACTTCTTGCAGTTTATGTTCTAAGATGGAGTGGGGCCCAT
GGACCAAGCTAGGATTTAGCTAGAATCTGCCTGTTGGCTTCCTCACTTTACCTCTGTGTGAAAT
GAAGCAAGGGCTCAGGGTGCTGGAGGATTAAGATCTCTTTAGAAGGAAAGAAAATGATTGACAT
AAAAGGATTCACCAGAGACTAGTTTCCATTTAAGAATTTCCAGTCTTTTGTCCTGGGTCACTCT
AAATATTAATCTGCATGTCTTAGAGCTCACCAGGCAGTACCAACTCTTTTCTCACAGCTATAAA
GACCTGGTGGAGAGGAAATTCTTATCATAGATATAAAAAAAATTCAGAATTCATTTTTGAAACT
GTATTTGTGTGAATGCCATGTAGATTTTTTAGTGCGTTGTGCTTTTAAGACCTAAATCATATAT
AATAAATTAAGGGACAATGGGGCTGACAGCACTAAACTCGGTGCTTATTGATATTTTAAGAAAT
ATCTGTGAAATATCATCACGTGTGTGTTATACTACCTTCATTTAAAAACGTTTAAAATGAGTTG
GATTCACTTTGACACTTCTCATATCATTTCCTAACCCAAGTGACTAAGATGTTCTCCCCAATGA
ATATACTCATTAGAATTACCATTCATTAGAATCATTCATTAGCTGATCCCTTAATTATATCCAT
TAATTTAAATACAGTTTAAATTTAAGTATTTATAAGCTCTGGCATCAGAGTCCTCTACTGTCCC
CCTAAGATGACATATTTGTCCTCACCGTGCATCCTGTCATCACTTGTCTTCAGAAAGGGCCAAA
TTCCCAGCCCACTCAATTTCTTCATAATAATGATGATGATTCAGTCCTAGACTAGCAGTTTCAT
TTAGAACAGTCAGGTTGTCTCCAAGAACCTCTAATTTTTCATTACATATTAAATATATGTAAAA
GAAATTAGATCTGGGAGATGCTGCAGTCACATACCTGCAATTGAGATGATTCCCAGACTTCCCT
GGCACTTTCAGTCAGTTCTGTCTGGTATTAAATGTCCAGGATTTTTTTGCTGCCTAAACCCACT
TTGCAGGAAAGAGGCCCAACCACCAAATGAGAATCAGGCCCTCGATGAGTAGCACTCTAGTTAC
GGTCCTGTTGATTAATTTTTGCCATTCCACATCTGTAAAAGAGACCACCAATATCATGCACAAA
ATTAGATTTCTCATACTCTAACTGTATATTTGTATGATATTTTAAAATCTCCGAAATGCTGGGC
AATGGCTGTTCACAATCGTCTTGCACTGGCCTTCTGATGGAGTGTTAACAATGCCTATTGTAAT
ATAGACAAAAGACTCTGGGCTGAATGTATGTATATAGGTTTTAAAGGGTCAGATGTTTAAGGAG
TGGCTTACAAATCAGTACTTTTCAGATAGGAGAGTTTCTTTACATTGCTGTGGCATCCTAAAAG
CTCTCTTCATGTAATCTTACTGGACTAGGCCTCCTGGGGATCAGAGTCCCCAAGAAAGAAAACT
TTTTCTTGTGATAGTATGAATCAAGATACCAGATTATCTGGATTTTTATTTCCAGTGTTTCAAG
TGGAAAATGTAACTCTTTATTGTCTGTAAATCTAACATTATTACTTTTCCTCTTAGAAGAATAT
TGTATTGTTAGATGTTTGTTGAACTGGTAATATCCTTGCAACCGCTGTAATATCTTCGTTAGTA
ATCTGTATAATACCTTGTATACAAGTAATGGTAAGATTGTTATTAAATGTAGCTTCAGTCATTA
AATAACTATAGCAAAGTAGTACTTCTGTAATATTTACAATGTATTAAGCCCATAGTATATTTTA
TTTCATTGATGTAATTTAACTGTTATTTATTCAAGAGAAAACATTTCATCCTGTCTATTGTCCA
AAGTTACCTGGAATCAAATAAAATTCTAGATTATCATGAAGAACA

hide sequence

RefSeq Acc Id:

XM_040283080 ⟹ XP_040139014

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	82,664,248 - 82,691,073 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005324777	(Get FASTA)	NCBI Sequence Viewer
	XP_021581690	(Get FASTA)	NCBI Sequence Viewer
	XP_021581691	(Get FASTA)	NCBI Sequence Viewer
	XP_040139014	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ76988	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022582.1
GenBank Protein	KAG3289911	(Get FASTA)	NCBI Sequence Viewer
	KAG3289912	(Get FASTA)	NCBI Sequence Viewer
	KAG3289913	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005324777 ⟸ XM_005324720

- UniProtKB:

I3NDY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTA
GDNSQLVPVDPGNNITEFYNKSLSSYKENEENIQCGENFMDMECFMILNPSQQLAIAVLSLTLG
TFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFVDFHVFHRKDSPNVFLF
KLGGVTASFTASVGSLFLTAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGW
NCKKLQSVCSDIFPLIDETYLMFWIGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIII
HTSEDGKVQVTRPDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCS
MLCLLNSTVNPIIYALRSKDLRHAFRSMFPSCEGTAQPLDNSMGDSDCLHKHANNTASVHRAAE
SCIKSTVKIAKVTMSVSTDTSAEAL

hide sequence

RefSeq Acc Id:

XP_021581690 ⟸ XM_021726015

- UniProtKB:

I3NDY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTA
GDNSQLVPVDPGNNITEFYNKSLSSYKENEENIQCGENFMDMECFMILNPSQQLAIAVLSLTLG
TFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFVDFHVFHRKDSPNVFLF
KLGGVTASFTASVGSLFLTAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGW
NCKKLQSVCSDIFPLIDETYLMFWIGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIII
HTSEDGKVQVTRPDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCS
MLCLLNSTVNPIIYALRSKDLRHAFRSMFPSCEGTAQPLDNSMGDSDCLHKHANNTASVHRAAE
SCIKSTVKIAKVTMSVSTDTSAEAL

hide sequence

RefSeq Acc Id:

XP_021581691 ⟸ XM_021726016

- UniProtKB:

I3NDY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKSILDGLADTTFRTITTDLLYVGSNDIQYEDIKGDMASKLGYFPQKFPLTSFRGSPFQEKMTA
GDNSQLVPVDPGNNITEFYNKSLSSYKENEENIQCGENFMDMECFMILNPSQQLAIAVLSLTLG
TFTVLENLLVLCVILHSRSLRCRPSYHFIGSLAVADLLGSVIFVYSFVDFHVFHRKDSPNVFLF
KLGGVTASFTASVGSLFLTAIDRYISIHRPLAYKRIVTRPKAVVAFCLMWTIAIVIAVLPLLGW
NCKKLQSVCSDIFPLIDETYLMFWIGVTSVLLLFIVYAYMYILWKAHSHAVRMIQRGTQKSIII
HTSEDGKVQVTRPDQARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMNKLIKTVFAFCS
MLCLLNSTVNPIIYALRSKDLRHAFRSMFPSCEGTAQPLDNSMGDSDCLHKHANNTASVHRAAE
SCIKSTVKIAKVTMSVSTDTSAEAL

hide sequence

RefSeq Acc Id:	XP_040139014 ⟸ XM_040283080
- UniProtKB:	I3NDY5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000022582 ⟸ ENSSTOT00000020145

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000020390	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020145.2	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	Canbinoid_rcpt_1	UniProtKB/TrEMBL
	Cnbnoid_rcpt	UniProtKB/TrEMBL
	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
KEGG Report	iti:101964948	UniProtKB/TrEMBL
NCBI Gene	Cnr1	ENTREZGENE
PANTHER	G-PROTEIN COUPLED RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_1	UniProtKB/TrEMBL
PIRSF	Cnoid_rcpt_1	UniProtKB/TrEMBL
PRINTS	CANABINOID1R	UniProtKB/TrEMBL
	CANNABINOIDR	UniProtKB/TrEMBL
	GPCRRHODOPSN	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
SMART	7TM_GPCR_Srsx	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	I3NDY5	ENTREZGENE, UniProtKB/TrEMBL
	Q6W9B7_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)