LYPLA1 (lysophospholipase 1) - Rat Genome Database

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Gene: LYPLA1 (lysophospholipase 1) Homo sapiens
Analyze
Symbol: LYPLA1
Name: lysophospholipase 1
RGD ID: 735384
HGNC Page HGNC:6737
Description: Enables lysophospholipase activity and palmitoyl-(protein) hydrolase activity. Involved in fatty acid transport and negative regulation of aggrephagy. Located in several cellular components, including cytosol; endoplasmic reticulum; and nucleus. Is active in cell surface.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: acyl-protein thioesterase 1; acyl-protein thioesterase-1; APT-1; APT1; hAPT1; LOC105375839; LPL-I; LPL1; lysophospholipase I; lysophospholipid-specific lysophospholipase; LYSOPLA; lysoPLA I; palmitoyl-protein hydrolase; uncharacterized LOC105375839
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LYPLA1P1   LYPLA1P2   LYPLA1P3  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38854,046,367 - 54,101,947 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl854,046,367 - 54,102,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37854,958,927 - 55,014,507 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,121,491 - 55,177,130 (-)NCBINCBI36Build 36hg18NCBI36
Build 34855,121,490 - 55,177,130NCBI
Celera850,949,236 - 51,005,140 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,427,322 - 50,482,732 (-)NCBIHuRef
CHM1_1855,010,550 - 55,065,879 (-)NCBICHM1_1
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (EXP)
2-hydroxypropanoic acid  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrolein  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (EXP)
diarsenic trioxide  (EXP)
Diisodecyl phthalate  (ISO)
diquat  (ISO)
diuron  (ISO)
doxorubicin  (EXP)
elemental selenium  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
folic acid  (ISO)
folpet  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (EXP)
lithocholic acid  (ISO)
methidathion  (ISO)
methylseleninic acid  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenylpropanolamine  (ISO)
phenytoin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (EXP)
rotenone  (EXP)
selenium atom  (EXP)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
Tributyltin oxide  (ISO)
triptonide  (ISO)
undecane  (ISO)
valproic acid  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,IEA)
cytosol  (IDA,IEA,TAS)
endoplasmic reticulum  (IDA,IEA)
extracellular exosome  (HDA)
membrane  (IEA)
nuclear membrane  (IDA,IEA)
nucleoplasm  (IDA)
nucleus  (IEA)
plasma membrane  (IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1531641   PMID:7566098   PMID:8619474   PMID:9110174   PMID:10064899   PMID:10395961   PMID:10760470   PMID:11042152   PMID:11080636   PMID:12477932   PMID:15489334   PMID:16344560  
PMID:18976975   PMID:19322201   PMID:19439193   PMID:19465924   PMID:19738201   PMID:20418879   PMID:20685872   PMID:21393252   PMID:21873635   PMID:22623428   PMID:23376485   PMID:23396970  
PMID:23533145   PMID:24682756   PMID:25416956   PMID:25670628   PMID:25849916   PMID:26186194   PMID:26344197   PMID:27481942   PMID:28380382   PMID:28514442   PMID:29117863   PMID:29295957  
PMID:29362370   PMID:29955894   PMID:30431103   PMID:30482805   PMID:31536960   PMID:32296183   PMID:32958780   PMID:33961781   PMID:34984578   PMID:35831314   PMID:35944360   PMID:36114006  
PMID:36215168   PMID:36803235   PMID:36966971   PMID:37802024   PMID:38344800   PMID:38496616  


Genomics

Comparative Map Data
LYPLA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38854,046,367 - 54,101,947 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl854,046,367 - 54,102,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37854,958,927 - 55,014,507 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,121,491 - 55,177,130 (-)NCBINCBI36Build 36hg18NCBI36
Build 34855,121,490 - 55,177,130NCBI
Celera850,949,236 - 51,005,140 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,427,322 - 50,482,732 (-)NCBIHuRef
CHM1_1855,010,550 - 55,065,879 (-)NCBICHM1_1
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBIT2T-CHM13v2.0
Lypla1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,878,046 - 4,916,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,878,011 - 4,918,633 (+)EnsemblGRCm39 Ensembl
GRCm3814,807,823 - 4,846,735 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14,807,788 - 4,848,410 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714,797,974 - 4,836,816 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614,797,974 - 4,836,816 (+)NCBIMGSCv36mm8
Celera14,819,711 - 4,858,108 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.79NCBI
Lypla1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,477,408 - 19,506,568 (-)NCBIGRCr8
mRatBN7.2514,679,605 - 14,708,774 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,679,606 - 14,708,746 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx516,873,890 - 16,902,965 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,487,392 - 18,516,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,208,564 - 18,237,635 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0514,559,333 - 14,588,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,559,334 - 14,588,422 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,341,836 - 19,370,929 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4514,882,196 - 14,911,284 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1514,882,195 - 14,911,284 (-)NCBI
Celera514,050,814 - 14,079,913 (-)NCBICelera
Cytogenetic Map5q12NCBI
Lypla1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545413,356,851 - 13,385,110 (-)NCBIChiLan1.0ChiLan1.0
LYPLA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2769,685,881 - 69,740,846 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,410,670 - 45,465,681 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,474,238 - 50,529,167 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1847,850,592 - 47,905,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl847,850,592 - 47,905,367 (-)Ensemblpanpan1.1panPan2
LYPLA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1295,656,376 - 5,696,901 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl295,616,961 - 5,697,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha296,031,347 - 6,072,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0295,732,636 - 5,773,863 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl295,691,587 - 5,773,875 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1295,669,309 - 5,710,546 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0295,874,942 - 5,916,139 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0295,957,952 - 5,999,169 (-)NCBIUU_Cfam_GSD_1.0
Lypla1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,814,174 - 73,848,519 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936496936,763 - 971,710 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936496937,918 - 971,315 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPLA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,083,548 - 77,102,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1477,083,624 - 77,102,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,154,849 - 84,172,657 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPLA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1850,120,930 - 50,171,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603991,764,068 - 91,814,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lypla1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247351,582,169 - 1,622,307 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LYPLA1
12 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q11.1-13.2(chr8:46031334-69303787)x3 copy number gain See cases [RCV000133720] Chr8:46031334..69303787 [GRCh38]
Chr8:46942956..70216022 [GRCh37]
Chr8:47062121..70378576 [NCBI36]
Chr8:8q11.1-13.2
pathogenic
GRCh38/hg38 8q11.23(chr8:53790469-54207499)x3 copy number gain See cases [RCV000135369] Chr8:53790469..54207499 [GRCh38]
Chr8:54703029..55120059 [GRCh37]
Chr8:54865582..55282612 [NCBI36]
Chr8:8q11.23
uncertain significance
GRCh38/hg38 8q11.23-12.1(chr8:53996579-56163431)x1 copy number loss See cases [RCV000135764] Chr8:53996579..56163431 [GRCh38]
Chr8:54909139..57075990 [GRCh37]
Chr8:55071692..57238544 [NCBI36]
Chr8:8q11.23-12.1
likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8p12-q12.1(chr8:36580103-59618998)x3 copy number gain See cases [RCV000139582] Chr8:36580103..59618998 [GRCh38]
Chr8:36437621..60531557 [GRCh37]
Chr8:36556779..60694111 [NCBI36]
Chr8:8p12-q12.1
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q11.21-12.1(chr8:49471778-57825470)x1 copy number loss See cases [RCV000142642] Chr8:49471778..57825470 [GRCh38]
Chr8:50384337..58738029 [GRCh37]
Chr8:50546890..58900583 [NCBI36]
Chr8:8q11.21-12.1
pathogenic|likely pathogenic
GRCh38/hg38 8q11.23-12.3(chr8:53325389-61863018)x1 copy number loss See cases [RCV000143182] Chr8:53325389..61863018 [GRCh38]
Chr8:54237949..62775577 [GRCh37]
Chr8:54400502..62938131 [NCBI36]
Chr8:8q11.23-12.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q11.23-12.3(chr8:53436131-65195953)x3 copy number gain See cases [RCV000239428] Chr8:53436131..65195953 [GRCh37]
Chr8:8q11.23-12.3
pathogenic
GRCh37/hg19 8p21.2-q12.1(chr8:24772064-24813176)x3 copy number gain See cases [RCV000446588] Chr8:24772064..24813176 [GRCh37]
Chr8:8p21.2-q12.1
uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q11.23-12.1(chr8:54661151-57790737)x3 copy number gain See cases [RCV000445710] Chr8:54661151..57790737 [GRCh37]
Chr8:8q11.23-12.1
uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_006330.4(LYPLA1):c.37A>G (p.Ile13Val) single nucleotide variant Inborn genetic diseases [RCV003248489] Chr8:54101787 [GRCh38]
Chr8:55014347 [GRCh37]
Chr8:8q11.23
uncertain significance
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q11.21-12.1(chr8:49822483-58822602)x1 copy number loss not provided [RCV000747540] Chr8:49822483..58822602 [GRCh37]
Chr8:8q11.21-12.1
pathogenic
NM_006330.4(LYPLA1):c.457C>T (p.Pro153Ser) single nucleotide variant not provided [RCV000965077] Chr8:54052660 [GRCh38]
Chr8:54965220 [GRCh37]
Chr8:8q11.23
benign
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3
pathogenic
GRCh37/hg19 8p11.22-q12.3(chr8:39555657-64049089)x3 copy number gain not provided [RCV000846266] Chr8:39555657..64049089 [GRCh37]
Chr8:8p11.22-q12.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q11.1-11.23(chr8:46863521-55218838)x3 copy number gain not provided [RCV000683033] Chr8:46863521..55218838 [GRCh37]
Chr8:8q11.1-11.23
uncertain significance
NC_000008.10:g.(?_54978308)_(56436786_?)dup duplication not provided [RCV001033025] Chr8:54978308..56436786 [GRCh37]
Chr8:8q11.23-12.1
uncertain significance
NC_000008.10:g.(?_54978308)_(56436786_?)dup duplication not provided [RCV001323424] Chr8:54978308..56436786 [GRCh37]
Chr8:8q11.23-12.1
uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771) copy number gain Polydactyly [RCV002280629] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_006330.4(LYPLA1):c.322A>G (p.Ile108Val) single nucleotide variant Inborn genetic diseases [RCV002902521] Chr8:54055098 [GRCh38]
Chr8:54967658 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.422C>G (p.Ala141Gly) single nucleotide variant Inborn genetic diseases [RCV002798585] Chr8:54052695 [GRCh38]
Chr8:54965255 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.43C>T (p.Pro15Ser) single nucleotide variant Inborn genetic diseases [RCV002887774] Chr8:54101781 [GRCh38]
Chr8:55014341 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.7G>A (p.Gly3Ser) single nucleotide variant Inborn genetic diseases [RCV002785026] Chr8:54101817 [GRCh38]
Chr8:55014377 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.625A>T (p.Ser209Cys) single nucleotide variant Inborn genetic diseases [RCV002804337] Chr8:54051026 [GRCh38]
Chr8:54963586 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.145A>G (p.Ile49Val) single nucleotide variant Inborn genetic diseases [RCV002718238] Chr8:54065770 [GRCh38]
Chr8:54978330 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.308A>T (p.Glu103Val) single nucleotide variant Inborn genetic diseases [RCV002920486] Chr8:54055112 [GRCh38]
Chr8:54967672 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.472G>A (p.Gly158Ser) single nucleotide variant Inborn genetic diseases [RCV003184357] Chr8:54051179 [GRCh38]
Chr8:54963739 [GRCh37]
Chr8:8q11.23
likely benign
GRCh37/hg19 8q11.23(chr8:54906222-55166087)x3 copy number gain not provided [RCV003484741] Chr8:54906222..55166087 [GRCh37]
Chr8:8q11.23
uncertain significance
GRCh37/hg19 8q11.23(chr8:54906222-55183775)x3 copy number gain not provided [RCV003484740] Chr8:54906222..55183775 [GRCh37]
Chr8:8q11.23
uncertain significance
GRCh37/hg19 8q11.23(chr8:54798193-55200535)x3 copy number gain not provided [RCV003484739] Chr8:54798193..55200535 [GRCh37]
Chr8:8q11.23
uncertain significance
NM_006330.4(LYPLA1):c.510C>T (p.His170=) single nucleotide variant not provided [RCV003435494] Chr8:54051141 [GRCh38]
Chr8:54963701 [GRCh37]
Chr8:8q11.23
likely benign
GRCh37/hg19 8p21.2-q21.3(chr8:27024288-89410121)x3 copy number gain not specified [RCV003986754] Chr8:27024288..89410121 [GRCh37]
Chr8:8p21.2-q21.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not specified [RCV003986742] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1612
Count of miRNA genes:826
Interacting mature miRNAs:940
Transcripts:ENST00000316963, ENST00000343231, ENST00000517297, ENST00000518546, ENST00000519272, ENST00000519891, ENST00000519926, ENST00000520718, ENST00000520896, ENST00000521352, ENST00000521856, ENST00000521898, ENST00000522007
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH80504  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37854,958,981 - 54,959,216UniSTSGRCh37
GRCh37671,876,881 - 71,877,116UniSTSGRCh37
Build 36671,933,602 - 71,933,837RGDNCBI36
Celera850,949,279 - 50,949,514UniSTS
Celera672,265,528 - 72,265,763RGD
Cytogenetic Map8q11.23UniSTS
Cytogenetic Map6q13UniSTS
HuRef850,427,376 - 50,427,611UniSTS
HuRef669,074,818 - 69,075,053UniSTS
LYPLA1__7347  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37854,958,870 - 54,959,706UniSTSGRCh37
Build 36855,121,423 - 55,122,259RGDNCBI36
Celera850,949,168 - 50,950,004RGD
HuRef850,427,265 - 50,428,101UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2248 2051 1564 610 1524 450 4124 1804 1344 392 1367 1575 174 1 1164 2585 5 2
Low 191 937 162 14 425 15 233 392 2390 26 93 38 1 40 203 1
Below cutoff 3 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001279356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001279357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001279358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001279359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001279360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005251127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001745453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001745454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_928895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_928896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA307642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA827237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC100821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF077198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF077199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA817192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA881616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA883059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000316963   ⟹   ENSP00000320043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,046,367 - 54,101,947 (-)Ensembl
RefSeq Acc Id: ENST00000343231   ⟹   ENSP00000344477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,047,407 - 54,101,828 (-)Ensembl
RefSeq Acc Id: ENST00000517297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,054,453 - 54,101,854 (-)Ensembl
RefSeq Acc Id: ENST00000518546   ⟹   ENSP00000428729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,051,011 - 54,101,977 (-)Ensembl
RefSeq Acc Id: ENST00000519272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,047,792 - 54,101,444 (-)Ensembl
RefSeq Acc Id: ENST00000519891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,051,125 - 54,101,554 (-)Ensembl
RefSeq Acc Id: ENST00000519926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,053,198 - 54,101,849 (-)Ensembl
RefSeq Acc Id: ENST00000520718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,047,963 - 54,052,898 (-)Ensembl
RefSeq Acc Id: ENST00000520896
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,055,102 - 54,101,554 (-)Ensembl
RefSeq Acc Id: ENST00000521352   ⟹   ENSP00000428306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,052,654 - 54,101,535 (-)Ensembl
RefSeq Acc Id: ENST00000521856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,100,350 - 54,101,928 (-)Ensembl
RefSeq Acc Id: ENST00000521898   ⟹   ENSP00000430791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,052,742 - 54,101,858 (-)Ensembl
RefSeq Acc Id: ENST00000522007   ⟹   ENSP00000427967
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,051,072 - 54,101,855 (-)Ensembl
RefSeq Acc Id: ENST00000618741   ⟹   ENSP00000484280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,046,368 - 54,101,554 (-)Ensembl
RefSeq Acc Id: ENST00000618914   ⟹   ENSP00000482430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl854,046,368 - 54,102,017 (-)Ensembl
RefSeq Acc Id: NM_001279356   ⟹   NP_001266285
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,879 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001279357   ⟹   NP_001266286
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,879 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001279358   ⟹   NP_001266287
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,879 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001279359   ⟹   NP_001266288
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,879 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001279360   ⟹   NP_001266289
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,416 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006330   ⟹   NP_006321
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
Build 36855,121,491 - 55,177,130 (-)NCBI Archive
HuRef850,427,322 - 50,482,732 (-)NCBI
CHM1_1855,010,550 - 55,065,879 (-)NCBI
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005251127   ⟹   XP_005251184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
GRCh37854,958,927 - 55,014,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017012956   ⟹   XP_016868445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017012958   ⟹   XP_016868447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017012960   ⟹   XP_016868449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047421223   ⟹   XP_047277179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
RefSeq Acc Id: XM_047421224   ⟹   XP_047277180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
RefSeq Acc Id: XM_047421225   ⟹   XP_047277181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
RefSeq Acc Id: XM_047421226   ⟹   XP_047277182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
RefSeq Acc Id: XM_047421227   ⟹   XP_047277183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,474 (-)NCBI
RefSeq Acc Id: XM_047421228   ⟹   XP_047277184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,046,367 - 54,101,947 (-)NCBI
RefSeq Acc Id: XM_054359536   ⟹   XP_054215511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359537   ⟹   XP_054215512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359538   ⟹   XP_054215513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,458,930 (-)NCBI
RefSeq Acc Id: XM_054359539   ⟹   XP_054215514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
RefSeq Acc Id: XM_054359540   ⟹   XP_054215515
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
RefSeq Acc Id: XM_054359541   ⟹   XP_054215516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359542   ⟹   XP_054215517
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359543   ⟹   XP_054215518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
RefSeq Acc Id: XM_054359544   ⟹   XP_054215519
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359545   ⟹   XP_054215520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,478,554 (-)NCBI
RefSeq Acc Id: XM_054359546   ⟹   XP_054215521
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0854,423,759 - 54,479,027 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001266285 (Get FASTA)   NCBI Sequence Viewer  
  NP_001266286 (Get FASTA)   NCBI Sequence Viewer  
  NP_001266287 (Get FASTA)   NCBI Sequence Viewer  
  NP_001266288 (Get FASTA)   NCBI Sequence Viewer  
  NP_001266289 (Get FASTA)   NCBI Sequence Viewer  
  NP_001412766 (Get FASTA)   NCBI Sequence Viewer  
  NP_006321 (Get FASTA)   NCBI Sequence Viewer  
  XP_005251184 (Get FASTA)   NCBI Sequence Viewer  
  XP_016868445 (Get FASTA)   NCBI Sequence Viewer  
  XP_016868447 (Get FASTA)   NCBI Sequence Viewer  
  XP_016868449 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277179 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277180 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277181 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277182 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277183 (Get FASTA)   NCBI Sequence Viewer  
  XP_047277184 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215511 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215512 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215513 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215514 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215515 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215516 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215517 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215518 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215519 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215520 (Get FASTA)   NCBI Sequence Viewer  
  XP_054215521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB88180 (Get FASTA)   NCBI Sequence Viewer  
  AAC31610 (Get FASTA)   NCBI Sequence Viewer  
  AAD26993 (Get FASTA)   NCBI Sequence Viewer  
  AAD26994 (Get FASTA)   NCBI Sequence Viewer  
  AAG10063 (Get FASTA)   NCBI Sequence Viewer  
  AAH08652 (Get FASTA)   NCBI Sequence Viewer  
  AAH10397 (Get FASTA)   NCBI Sequence Viewer  
  BAF82089 (Get FASTA)   NCBI Sequence Viewer  
  BAG36480 (Get FASTA)   NCBI Sequence Viewer  
  BAG60476 (Get FASTA)   NCBI Sequence Viewer  
  CAG33384 (Get FASTA)   NCBI Sequence Viewer  
  EAW86742 (Get FASTA)   NCBI Sequence Viewer  
  EAW86743 (Get FASTA)   NCBI Sequence Viewer  
  EAW86744 (Get FASTA)   NCBI Sequence Viewer  
  EAW86745 (Get FASTA)   NCBI Sequence Viewer  
  EAW86746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000320043
  ENSP00000320043.3
  ENSP00000344477
  ENSP00000344477.6
  ENSP00000427967.1
  ENSP00000428306.1
  ENSP00000428729.1
  ENSP00000430791.2
  ENSP00000482430
  ENSP00000482430.1
  ENSP00000484280
  ENSP00000484280.1
GenBank Protein O75608 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_006321   ⟸   NM_006330
- Peptide Label: isoform 1
- UniProtKB: O43202 (UniProtKB/Swiss-Prot),   Q9UQF9 (UniProtKB/Swiss-Prot),   O75608 (UniProtKB/Swiss-Prot),   Q6IAQ1 (UniProtKB/TrEMBL),   B4DJV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001266288   ⟸   NM_001279359
- Peptide Label: isoform 5
- UniProtKB: O75608 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001266286   ⟸   NM_001279357
- Peptide Label: isoform 3
- UniProtKB: E5RGR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001266285   ⟸   NM_001279356
- Peptide Label: isoform 2
- UniProtKB: B4DP64 (UniProtKB/TrEMBL),   E5RGR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001266287   ⟸   NM_001279358
- Peptide Label: isoform 4
- UniProtKB: B4DJV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001266289   ⟸   NM_001279360
- Peptide Label: isoform 6
- UniProtKB: A0A087X1K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005251184   ⟸   XM_005251127
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016868447   ⟸   XM_017012958
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016868449   ⟸   XM_017012960
- Peptide Label: isoform X7
- UniProtKB: A0A087X1K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016868445   ⟸   XM_017012956
- Peptide Label: isoform X3
- UniProtKB: E5RGR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000428729   ⟸   ENST00000518546
RefSeq Acc Id: ENSP00000428306   ⟸   ENST00000521352
RefSeq Acc Id: ENSP00000430791   ⟸   ENST00000521898
RefSeq Acc Id: ENSP00000427967   ⟸   ENST00000522007
RefSeq Acc Id: ENSP00000484280   ⟸   ENST00000618741
RefSeq Acc Id: ENSP00000482430   ⟸   ENST00000618914
RefSeq Acc Id: ENSP00000320043   ⟸   ENST00000316963
RefSeq Acc Id: ENSP00000344477   ⟸   ENST00000343231
RefSeq Acc Id: XP_047277181   ⟸   XM_047421225
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047277184   ⟸   XM_047421228
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047277182   ⟸   XM_047421226
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047277183   ⟸   XM_047421227
- Peptide Label: isoform X7
- UniProtKB: A0A087X1K9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047277180   ⟸   XM_047421224
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047277179   ⟸   XM_047421223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215515   ⟸   XM_054359540
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054215514   ⟸   XM_054359539
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054215518   ⟸   XM_054359543
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054215521   ⟸   XM_054359546
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215520   ⟸   XM_054359545
- Peptide Label: isoform X7
- UniProtKB: A0A087X1K9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054215516   ⟸   XM_054359541
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054215517   ⟸   XM_054359542
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054215519   ⟸   XM_054359544
- Peptide Label: isoform X7
- UniProtKB: A0A087X1K9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054215512   ⟸   XM_054359537
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054215511   ⟸   XM_054359536
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054215513   ⟸   XM_054359538
- Peptide Label: isoform X8
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O75608-F1-model_v2 AlphaFold O75608 1-230 view protein structure

Promoters
RGD ID:7213317
Promoter ID:EPDNEW_H12403
Type:initiation region
Name:LYPLA1_1
Description:lysophospholipase I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12404  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,101,854 - 54,101,914EPDNEW
RGD ID:7213315
Promoter ID:EPDNEW_H12404
Type:initiation region
Name:LYPLA1_2
Description:lysophospholipase I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12403  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38854,101,960 - 54,102,020EPDNEW
RGD ID:6806858
Promoter ID:HG_KWN:61298
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_006330,   UC003XRZ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36855,176,854 - 55,177,354 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6737 AgrOrtholog
COSMIC LYPLA1 COSMIC
Ensembl Genes ENSG00000120992 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000316963 ENTREZGENE
  ENST00000316963.8 UniProtKB/Swiss-Prot
  ENST00000343231 ENTREZGENE
  ENST00000343231.10 UniProtKB/Swiss-Prot
  ENST00000518546.5 UniProtKB/TrEMBL
  ENST00000521352.5 UniProtKB/TrEMBL
  ENST00000521898.5 UniProtKB/TrEMBL
  ENST00000522007.5 UniProtKB/TrEMBL
  ENST00000618741 ENTREZGENE
  ENST00000618741.1 UniProtKB/TrEMBL
  ENST00000618914 ENTREZGENE
  ENST00000618914.4 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000120992 GTEx
HGNC ID HGNC:6737 ENTREZGENE
Human Proteome Map LYPLA1 Human Proteome Map
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase/COase/thioEstase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10434 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 10434 ENTREZGENE
OMIM 605599 OMIM
PANTHER ACYL-PROTEIN THIOESTERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYSOPHOSPHOLIPASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Abhydrolase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA30499 PharmGKB
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087X1K9 ENTREZGENE, UniProtKB/TrEMBL
  B4DJV9 ENTREZGENE, UniProtKB/TrEMBL
  B4DP64 ENTREZGENE, UniProtKB/TrEMBL
  E5RFT6_HUMAN UniProtKB/TrEMBL
  E5RGR0 ENTREZGENE, UniProtKB/TrEMBL
  E5RI35_HUMAN UniProtKB/TrEMBL
  E5RJ48_HUMAN UniProtKB/TrEMBL
  LYPA1_HUMAN UniProtKB/Swiss-Prot
  O43202 ENTREZGENE
  O75608 ENTREZGENE
  Q6IAQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q9UQF9 ENTREZGENE
UniProt Secondary O43202 UniProtKB/Swiss-Prot
  Q9UQF9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-30 LYPLA1  lysophospholipase 1  LOC105375839  uncharacterized LOC105375839  GeneMerge from RGD:38655295 737654 PROVISIONAL
2018-10-30 LYPLA1  lysophospholipase 1    lysophospholipase I  Symbol and/or name change 5135510 APPROVED