Ptprr (protein tyrosine phosphatase receptor type R) - Rat Genome Database

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Gene: Ptprr (protein tyrosine phosphatase receptor type R) Mus musculus
Analyze
Symbol: Ptprr
Name: protein tyrosine phosphatase receptor type R
RGD ID: 733749
MGI Page MGI
Description: Enables protein kinase binding activity and protein tyrosine phosphatase activity. Acts upstream of or within protein dephosphorylation. Predicted to be active in cell junction; cytosol; and plasma membrane. Is expressed in several structures, including central nervous system; dorsal root ganglion; and retina nuclear layer. Orthologous to human PTPRR (protein tyrosine phosphatase receptor type R).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gmcp1; mPTP213; phosphotyrosine phosphatase 13; protein-tyrosine-phosphatase SL; protein-tyrosine-phosphatase-SL; PT; PTP; PTP-SL; PTPBR7; R; R-PTP-R; receptor-type tyrosine-protein phosphatase R; RPTPRR; STEP-like PTPase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,854,093 - 116,110,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,854,118 - 116,110,837 (+)EnsemblGRCm39 Ensembl
GRCm3810116,018,188 - 116,274,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10116,018,213 - 116,274,932 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,455,419 - 115,711,985 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610115,422,509 - 115,679,039 (+)NCBIMGSCv36mm8
Celera10117,959,423 - 118,215,461 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1064.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IBA,IEA,ISO)
cytosol  (IBA,IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7832766   PMID:7836467   PMID:9486824   PMID:9602027   PMID:9857190   PMID:10066421   PMID:10349636   PMID:10393441   PMID:10419510   PMID:10601328   PMID:10705342   PMID:10949045  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:15226823   PMID:15461663   PMID:16141072   PMID:16141073   PMID:16148006   PMID:16602821   PMID:17015433  
PMID:17147696   PMID:17239249   PMID:17266727   PMID:18068678   PMID:18308476   PMID:19243017   PMID:19727691   PMID:21267068   PMID:21677750   PMID:21850207   PMID:21873635   PMID:24556203  
PMID:25571783  


Genomics

Comparative Map Data
Ptprr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,854,093 - 116,110,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,854,118 - 116,110,837 (+)EnsemblGRCm39 Ensembl
GRCm3810116,018,188 - 116,274,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10116,018,213 - 116,274,932 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710115,455,419 - 115,711,985 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610115,422,509 - 115,679,039 (+)NCBIMGSCv36mm8
Celera10117,959,423 - 118,215,461 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1064.01NCBI
PTPRR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381270,638,073 - 70,920,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1270,638,073 - 70,920,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371271,031,853 - 71,314,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361269,318,129 - 69,600,853 (-)NCBINCBI36Build 36hg18NCBI36
Build 341269,318,128 - 69,434,632NCBI
Celera1270,695,535 - 70,977,822 (-)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1268,081,248 - 68,364,028 (-)NCBIHuRef
CHM1_11271,001,121 - 71,283,977 (-)NCBICHM1_1
T2T-CHM13v2.01270,617,477 - 70,900,236 (-)NCBIT2T-CHM13v2.0
Ptprr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8753,548,611 - 53,815,632 (+)NCBIGRCr8
mRatBN7.2751,662,595 - 51,929,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl751,662,595 - 51,929,603 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx753,569,319 - 53,836,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0755,772,411 - 56,039,410 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0755,550,399 - 55,817,402 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0759,039,717 - 59,325,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl759,039,720 - 59,325,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0759,207,155 - 59,335,376 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0759,041,711 - 59,084,462 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4755,324,246 - 55,612,945 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1755,344,975 - 55,633,672 (+)NCBI
Celera748,446,749 - 48,710,763 (+)NCBICelera
Cytogenetic Map7q22NCBI
Ptprr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540510,767,507 - 11,026,914 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540510,767,548 - 11,133,695 (-)NCBIChiLan1.0ChiLan1.0
PTPRR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21078,653,652 - 78,936,078 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11278,650,051 - 78,932,477 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01268,148,200 - 68,430,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11270,915,951 - 71,197,146 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1270,915,951 - 71,196,732 (-)Ensemblpanpan1.1panPan2
PTPRR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11012,385,121 - 12,618,438 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1012,385,107 - 12,594,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1012,324,091 - 12,557,686 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01012,517,368 - 12,751,240 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1012,517,368 - 12,751,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11012,382,959 - 12,616,783 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01012,630,054 - 12,863,956 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01012,754,267 - 12,988,172 (-)NCBIUU_Cfam_GSD_1.0
Ptprr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494545,732,053 - 45,841,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365458,268,218 - 8,377,169 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365458,268,227 - 8,377,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl534,794,977 - 35,047,818 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1534,794,970 - 35,048,550 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2537,346,846 - 37,511,950 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11166,222,495 - 66,496,247 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1166,223,605 - 66,353,700 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037179,171,480 - 179,454,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475026,906,871 - 27,188,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475026,907,292 - 27,188,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptprr
9972 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1893
Count of miRNA genes:429
Interacting mature miRNAs:507
Transcripts:ENSMUST00000063470, ENSMUST00000105271, ENSMUST00000124369, ENSMUST00000128399, ENSMUST00000142617, ENSMUST00000148731, ENSMUST00000155606
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
26884377Skwq3_mskull length QTL 3, 5 week (mouse)10114635905122735905Mouse
26884383Bzwq3_mbi-zygomatic width QTL 3, 5 week (mouse)10114235905122735905Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
10412078Hylaq3_mHyperlocomotor activity related QTL 3 (mouse)Not determined10111568226117986649Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884391Skwq11_mskull length QTL 11, 16 week (mouse)10113535905121635905Mouse
13506931Recrq11_mrecombination rate in male meiosis QTL 11 (mouse)10114335905123635905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
26884433Zlq2_mzygomatic length QTL 2, 5 week (mouse)10113535905125735869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
11353823Homaq2_mhomeostatic model assessment QTL 2 (mouse)10110453347125515907Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
11353822Insq12_minsulin QTL 12 (mouse)10110453347125515907Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse

Markers in Region
D10Mit101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810116,239,444 - 116,239,563UniSTSGRCm38
MGSCv3710115,676,500 - 115,676,619UniSTSGRCm37
Celera10118,179,755 - 118,179,874UniSTS
Cytogenetic Map10A2UniSTS
cM Map1063.0UniSTS
Whitehead Genetic1065.6UniSTS
Whitehead/MRC_RH101223.03UniSTS
AU048245  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810116,123,272 - 116,123,402UniSTSGRCm38
MGSCv3710115,560,328 - 115,560,458UniSTSGRCm37
Celera10118,064,182 - 118,064,312UniSTS
Cytogenetic Map10A2UniSTS
D31898  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810116,273,910 - 116,273,996UniSTSGRCm38
MGSCv3710115,710,966 - 115,711,052UniSTSGRCm37
Celera10118,214,442 - 118,214,528UniSTS
Cytogenetic Map10A2UniSTS
Whitehead/MRC_RH101223.03UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Ptprr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10A2UniSTS
cM Map1064.01UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001161838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001161839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001161840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF041866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF129509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF914721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ059486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ061226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D31898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV657487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z30313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000063470   ⟹   ENSMUSP00000064392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,854,118 - 116,110,837 (+)Ensembl
GRCm38.p6 Ensembl10116,018,213 - 116,274,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105271   ⟹   ENSMUSP00000100907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,979,808 - 116,110,835 (+)Ensembl
GRCm38.p6 Ensembl10116,143,903 - 116,274,930 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,032,301 - 116,073,166 (+)Ensembl
GRCm38.p6 Ensembl10116,196,396 - 116,237,261 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128399   ⟹   ENSMUSP00000114455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,013,316 - 116,110,250 (+)Ensembl
GRCm38.p6 Ensembl10116,177,411 - 116,274,345 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10115,854,192 - 115,950,864 (+)Ensembl
GRCm38.p6 Ensembl10116,018,287 - 116,114,959 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148731   ⟹   ENSMUSP00000120965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,013,163 - 116,110,837 (+)Ensembl
GRCm38.p6 Ensembl10116,177,258 - 116,274,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155606   ⟹   ENSMUSP00000122259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10116,013,256 - 116,110,837 (+)Ensembl
GRCm38.p6 Ensembl10116,177,351 - 116,274,932 (+)Ensembl
RefSeq Acc Id: NM_001161837   ⟹   NP_001155309
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,979,803 - 116,110,834 (+)NCBI
GRCm3810116,143,898 - 116,274,929 (+)NCBI
Celera10117,959,423 - 118,215,461 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001161838   ⟹   NP_001155310
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,013,256 - 116,110,834 (+)NCBI
GRCm3810116,177,351 - 116,274,929 (+)NCBI
MGSCv3710115,455,419 - 115,711,985 (+)RGD
Celera10117,959,423 - 118,215,461 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001161839   ⟹   NP_001155311
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,013,163 - 116,110,834 (+)NCBI
GRCm3810116,177,258 - 116,274,929 (+)NCBI
MGSCv3710115,455,419 - 115,711,985 (+)RGD
Celera10117,959,423 - 118,215,461 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001161840   ⟹   NP_001155312
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910116,013,256 - 116,110,834 (+)NCBI
GRCm3810116,177,351 - 116,274,929 (+)NCBI
MGSCv3710115,455,419 - 115,711,985 (+)RGD
Celera10117,959,423 - 118,215,461 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358484   ⟹   NP_001345413
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,979,803 - 116,110,834 (+)NCBI
GRCm3810116,143,898 - 116,274,929 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011217   ⟹   NP_035347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,854,268 - 116,110,834 (+)NCBI
GRCm3810116,018,363 - 116,274,929 (+)NCBI
MGSCv3710115,455,419 - 115,711,985 (+)RGD
Celera10117,959,423 - 118,215,461 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513382   ⟹   XP_006513445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910115,854,093 - 116,110,837 (+)NCBI
GRCm3810116,018,188 - 116,274,932 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001155309 (Get FASTA)   NCBI Sequence Viewer  
  NP_001155310 (Get FASTA)   NCBI Sequence Viewer  
  NP_001155311 (Get FASTA)   NCBI Sequence Viewer  
  NP_001155312 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345413 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415699 (Get FASTA)   NCBI Sequence Viewer  
  NP_035347 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513445 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD09171 (Get FASTA)   NCBI Sequence Viewer  
  AAD29673 (Get FASTA)   NCBI Sequence Viewer  
  AAI19231 (Get FASTA)   NCBI Sequence Viewer  
  AAI20548 (Get FASTA)   NCBI Sequence Viewer  
  BAA06696 (Get FASTA)   NCBI Sequence Viewer  
  BAC25724 (Get FASTA)   NCBI Sequence Viewer  
  CAA82957 (Get FASTA)   NCBI Sequence Viewer  
  CAF06526 (Get FASTA)   NCBI Sequence Viewer  
  CAF06527 (Get FASTA)   NCBI Sequence Viewer  
  CAF06528 (Get FASTA)   NCBI Sequence Viewer  
  CAF06529 (Get FASTA)   NCBI Sequence Viewer  
  CAF06530 (Get FASTA)   NCBI Sequence Viewer  
  CAF21736 (Get FASTA)   NCBI Sequence Viewer  
  CAF21737 (Get FASTA)   NCBI Sequence Viewer  
  CAF21738 (Get FASTA)   NCBI Sequence Viewer  
  CAF21739 (Get FASTA)   NCBI Sequence Viewer  
  EDL21781 (Get FASTA)   NCBI Sequence Viewer  
  EDL21782 (Get FASTA)   NCBI Sequence Viewer  
  EDL21783 (Get FASTA)   NCBI Sequence Viewer  
  EDL21784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000064392
  ENSMUSP00000064392.5
  ENSMUSP00000100907
  ENSMUSP00000100907.3
  ENSMUSP00000114455
  ENSMUSP00000114455.2
  ENSMUSP00000120965
  ENSMUSP00000120965.2
  ENSMUSP00000122259
  ENSMUSP00000122259.2
GenBank Protein Q62132 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035347   ⟸   NM_011217
- Peptide Label: isoform a precursor
- UniProtKB: Q64492 (UniProtKB/Swiss-Prot),   Q64491 (UniProtKB/Swiss-Prot),   Q9QUH9 (UniProtKB/Swiss-Prot),   Q62132 (UniProtKB/Swiss-Prot),   Q5U1U6 (UniProtKB/TrEMBL),   Q8CEI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155311   ⟸   NM_001161839
- Peptide Label: isoform c
- UniProtKB: Q5U1U8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155310   ⟸   NM_001161838
- Peptide Label: isoform c
- UniProtKB: Q5U1U8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155312   ⟸   NM_001161840
- Peptide Label: isoform c
- UniProtKB: Q5U1U8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155309   ⟸   NM_001161837
- Peptide Label: isoform b
- UniProtKB: Q5U1V1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513445   ⟸   XM_006513382
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001345413   ⟸   NM_001358484
- Peptide Label: isoform d
- UniProtKB: Q5U1U5 (UniProtKB/TrEMBL),   Q5U1V1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000100907   ⟸   ENSMUST00000105271
Ensembl Acc Id: ENSMUSP00000120965   ⟸   ENSMUST00000148731
Ensembl Acc Id: ENSMUSP00000114455   ⟸   ENSMUST00000128399
Ensembl Acc Id: ENSMUSP00000064392   ⟸   ENSMUST00000063470
Ensembl Acc Id: ENSMUSP00000122259   ⟸   ENSMUST00000155606
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62132-F1-model_v2 AlphaFold Q62132 1-656 view protein structure

Promoters
RGD ID:6819778
Promoter ID:MM_KWN:5654
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000064458,   OTTMUST00000064459
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610115,455,246 - 115,455,746 (+)MPROMDB
RGD ID:8673284
Promoter ID:EPDNEW_M14673
Type:multiple initiation site
Name:Ptprr_1
Description:Mus musculus protein tyrosine phosphatase, receptor type, R ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14675  EPDNEW_M14676  EPDNEW_M14677  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810116,018,383 - 116,018,443EPDNEW
RGD ID:8673288
Promoter ID:EPDNEW_M14675
Type:multiple initiation site
Name:Ptprr_3
Description:Mus musculus protein tyrosine phosphatase, receptor type, R ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14673  EPDNEW_M14676  EPDNEW_M14677  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810116,143,892 - 116,143,952EPDNEW
RGD ID:8673290
Promoter ID:EPDNEW_M14676
Type:single initiation site
Name:Ptprr_4
Description:Mus musculus protein tyrosine phosphatase, receptor type, R ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14673  EPDNEW_M14675  EPDNEW_M14677  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810116,177,242 - 116,177,302EPDNEW
RGD ID:8673292
Promoter ID:EPDNEW_M14677
Type:multiple initiation site
Name:Ptprr_2
Description:Mus musculus protein tyrosine phosphatase, receptor type, R ,transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14673  EPDNEW_M14675  EPDNEW_M14676  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810116,177,409 - 116,177,469EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109559 AgrOrtholog
Ensembl Genes ENSMUSG00000020151 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063470 ENTREZGENE
  ENSMUST00000063470.11 UniProtKB/Swiss-Prot
  ENSMUST00000105271 ENTREZGENE
  ENSMUST00000105271.9 UniProtKB/Swiss-Prot
  ENSMUST00000128399 ENTREZGENE
  ENSMUST00000128399.2 UniProtKB/Swiss-Prot
  ENSMUST00000148731 ENTREZGENE
  ENSMUST00000148731.8 UniProtKB/Swiss-Prot
  ENSMUST00000155606 ENTREZGENE
  ENSMUST00000155606.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_KIM-con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_rcpt_R/non-rcpt_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19279 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109559 ENTREZGENE
NCBI Gene 19279 ENTREZGENE
PANTHER PTHR46198 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprr PhenoGen
PIRSF PTPRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS KIMPTPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt PTPRR_MOUSE UniProtKB/Swiss-Prot
  Q5U1U5 ENTREZGENE, UniProtKB/TrEMBL
  Q5U1U6 ENTREZGENE, UniProtKB/TrEMBL
  Q5U1U7_MOUSE UniProtKB/TrEMBL
  Q5U1U8 ENTREZGENE, UniProtKB/TrEMBL
  Q5U1V1 ENTREZGENE, UniProtKB/TrEMBL
  Q62132 ENTREZGENE
  Q64491 ENTREZGENE
  Q64492 ENTREZGENE
  Q8CEI8 ENTREZGENE, UniProtKB/TrEMBL
  Q9QUH9 ENTREZGENE
UniProt Secondary Q64491 UniProtKB/Swiss-Prot
  Q64492 UniProtKB/Swiss-Prot
  Q9QUH9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-16 Ptprr  protein tyrosine phosphatase receptor type R  Ptprr  protein tyrosine phosphatase, receptor type, R  Symbol and/or name change 5135510 APPROVED