DSCAM (DS cell adhesion molecule) - Rat Genome Database

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Gene: DSCAM (DS cell adhesion molecule) Homo sapiens
Analyze
Symbol: DSCAM
Name: DS cell adhesion molecule
RGD ID: 732493
HGNC Page HGNC:3039
Description: Enables netrin receptor binding activity. Involved in positive regulation of axon extension involved in axon guidance and positive regulation of phosphorylation. Predicted to be located in dendrite; growth cone; and synapse. Predicted to be active in axon; neuronal cell body; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cell adhesion molecule DSCAM; CHD2; CHD2-42; CHD2-52; Down syndrome cell adhesion molecule; human CHD2-52 down syndrome cell adhesion molecule
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382140,010,999 - 40,847,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2140,010,999 - 40,847,158 (-)EnsemblGRCh38hg38GRCh38
GRCh372141,382,926 - 42,219,084 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362140,306,213 - 41,140,909 (-)NCBINCBI36Build 36hg18NCBI36
Build 342140,306,212 - 41,140,909NCBI
Celera2126,582,079 - 27,417,510 (-)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,884,190 - 27,191,292 (-)NCBIHuRef
HuRef2127,195,979 - 27,689,477 (-)NCBIHuRef
CHM1_12140,945,084 - 41,641,065 (-)NCBICHM1_1
T2T-CHM13v2.02138,398,213 - 39,235,595 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanautistic disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
DSCAMHumanautistic disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autistic disorder of childhood onsetClinVarPMID:25418537 more ...
DSCAMHumanesophageal atresia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Esophageal atresiaClinVar 
DSCAMHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28191889
DSCAMHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
DSCAMHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
DSCAMHumanHirschsprung's disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Aganglionic megacolonClinVar 
DSCAMHumanintellectual disability  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanHepatomegaly  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:28108177
DSCAMHumanNeurodevelopmental Disorders  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:28191889
DSCAMHumansubstance-related disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20098672

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHuman17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of DSCAM mRNACTDPMID:30165855
DSCAMHuman2,2',5,5'-tetrachlorobiphenyl increases expressionISODscam (Rattus norvegicus)64804642 more ...CTDPMID:23829299
DSCAMHuman4,4'-sulfonyldiphenol decreases expressionISODscam (Mus musculus)6480464bisphenol S results in decreased expression of DSCAM mRNACTDPMID:30951980
DSCAMHuman4,4'-sulfonyldiphenol decreases methylationISODscam (Mus musculus)6480464bisphenol S results in decreased methylation of DSCAM exonCTDPMID:33297965
DSCAMHuman6-propyl-2-thiouracil decreases expressionISODscam (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of DSCAM mRNACTDPMID:30047161
DSCAMHumanacrylamide increases expressionISODscam (Rattus norvegicus)6480464Acrylamide results in increased expression of DSCAM mRNACTDPMID:28959563
DSCAMHumanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of DSCAM gene and Aflatoxin B1 results in decreased methylation of DSCAM intronCTDPMID:27153756 and PMID:30157460
DSCAMHumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of DSCAM intronCTDPMID:30157460
DSCAMHumanalpha-Zearalanol multiple interactionsISODscam (Rattus norvegicus)6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of DSCAM mRNACTDPMID:35163327
DSCAMHumanamitrole decreases expressionISODscam (Rattus norvegicus)6480464Amitrole results in decreased expression of DSCAM mRNACTDPMID:30047161
DSCAMHumanatrazine affects methylationISODscam (Rattus norvegicus)6480464Atrazine affects the methylation of DSCAM geneCTDPMID:35440735
DSCAMHumanbenzo[a]pyrene decreases methylationEXP 6480464Benzo(a)pyrene results in decreased methylation of DSCAM exon and Benzo(a)pyrene results in decreased methylation of DSCAM promoterCTDPMID:27901495
DSCAMHumanbenzo[a]pyrene affects methylationISODscam (Mus musculus)6480464Benzo(a)pyrene affects the methylation of DSCAM exon and Benzo(a)pyrene affects the methylation of DSCAM intronCTDPMID:27901495
DSCAMHumanbenzo[a]pyrene increases methylationISODscam (Mus musculus)6480464Benzo(a)pyrene results in increased methylation of DSCAM intronCTDPMID:27901495
DSCAMHumanbenzo[e]pyrene increases methylationEXP 6480464benzo(e)pyrene results in increased methylation of DSCAM intronCTDPMID:30157460
DSCAMHumanbisphenol A decreases expressionISODscam (Rattus norvegicus)6480464bisphenol A results in decreased expression of DSCAM mRNACTDPMID:25181051
DSCAMHumanbisphenol A decreases expressionISODscam (Mus musculus)6480464bisphenol A results in decreased expression of DSCAM mRNACTDPMID:32156529
DSCAMHumanbisphenol A decreases methylationEXP 6480464bisphenol A results in decreased methylation of DSCAM geneCTDPMID:31601247
DSCAMHumanbisphenol A increases methylationISODscam (Rattus norvegicus)6480464bisphenol A results in increased methylation of DSCAM geneCTDPMID:28505145
DSCAMHumancadmium dichloride increases expressionEXP 6480464Cadmium Chloride results in increased expression of DSCAM mRNACTDPMID:38568856

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Biological Process
1 to 20 of 30 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanaxon guidance involved_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumanaxon guidance involved_inIBAFB:FBgn0000635 more ...150520179 GO_CentralGO_REF:0000033
DSCAMHumanaxon guidance involved_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumancamera-type eye photoreceptor cell differentiation involved_inISSUniProtKB:F1NY98150520179 UniProtGO_REF:0000024
DSCAMHumancell adhesion involved_inTAS 150520179 PMID:9426258PINCPMID:9426258
DSCAMHumancell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
DSCAMHumancentral nervous system development involved_inIBAFB:FBgn0033159 more ...150520179 GO_CentralGO_REF:0000033
DSCAMHumandendrite morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumandendrite self-avoidance involved_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumandendrite self-avoidance involved_inIBAFB:FBgn0010473 more ...150520179 GO_CentralGO_REF:0000033
DSCAMHumandendrite self-avoidance involved_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumandendritic spine development acts_upstream_of_or_withinIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inISSUniProtKB:F1NY98150520179 UniProtGO_REF:0000024
DSCAMHumanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIBAFB:FBgn0000635 more ...150520179 GO_CentralGO_REF:0000033
DSCAMHumanlocomotory behavior acts_upstream_of_or_withinIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumannegative regulation of cell adhesion involved_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumannegative regulation of cell adhesion involved_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumannervous system development involved_inTAS 150520179 PMID:9426258PINCPMID:9426258
DSCAMHumannervous system development involved_inIEAARBA:ARBA00027428150520179 UniProtGO_REF:0000117
DSCAMHumannervous system development involved_inIEAUniProtKB-KW:KW-0524150520179 UniProtGO_REF:0000043
1 to 20 of 30 rows

Cellular Component
1 to 20 of 28 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanaxon located_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumanaxon is_active_inIBAFB:FBgn0000635 more ...150520179 GO_CentralGO_REF:0000033
DSCAMHumanaxon located_inIEAUniProtKB-SubCell:SL-0279150520179 UniProtGO_REF:0000044
DSCAMHumanaxon located_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumancell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
DSCAMHumandendrite located_inIEAUniProtKB-SubCell:SL-0283150520179 UniProtGO_REF:0000044
DSCAMHumandendrite located_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumandendrite located_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumanextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
DSCAMHumanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
DSCAMHumangrowth cone located_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumangrowth cone located_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumangrowth cone located_inIEAUniProtKB-SubCell:SL-0288150520179 UniProtGO_REF:0000044
DSCAMHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
DSCAMHumanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
DSCAMHumanmembrane located_inTAS 150520179 PMID:9426258PINCPMID:9426258
DSCAMHumanneuronal cell body located_inISSUniProtKB:Q9ERC8150520179 UniProtGO_REF:0000024
DSCAMHumanneuronal cell body is_active_inIBAMGI:1196281 and PANTHER:PTN002560413150520179 GO_CentralGO_REF:0000033
DSCAMHumanneuronal cell body located_inIEAUniProtKB:Q9ERC8 and ensembl:ENSMUSP00000056040150520179 EnsemblGO_REF:0000107
DSCAMHumanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
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Molecular Function

  

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanforkhead class A signaling pathway  EXP 6484113 PIDPID:200226
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DSCAMHumanAganglionic megacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hirschsprung diseaseClinVar 
DSCAMHumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:25418537 more ...
DSCAMHumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
DSCAMHumanEsophageal atresia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Esophageal atresiaClinVar 
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
DSCAMHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
1 to 13 of 13 rows

#
Reference Title
Reference Citation
1. Down syndrome congenital heart disease: a narrowed region and a candidate gene. Barlow GM, etal., Genet Med 2001 Mar-Apr;3(2):91-101.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:9426258   PMID:10830953   PMID:10925149   PMID:12051741   PMID:12435380   PMID:16009131   PMID:17721508   PMID:18197079   PMID:18519826   PMID:18585357   PMID:19196994  
PMID:19211897   PMID:19240061   PMID:19945391   PMID:20379614   PMID:21079520   PMID:21360594   PMID:21507922   PMID:21645617   PMID:21873635   PMID:22685302   PMID:22744455   PMID:23251661  
PMID:23479427   PMID:23518928   PMID:23671607   PMID:24047446   PMID:24057671   PMID:24639526   PMID:25226531   PMID:25363760   PMID:25363768   PMID:25408124   PMID:25653356   PMID:25867994  
PMID:27824329   PMID:30005639   PMID:30206355   PMID:30541104   PMID:31737900   PMID:32296183   PMID:32379981   PMID:33004838   PMID:33945512   PMID:34253863   PMID:34312540   PMID:34349018  
PMID:34372727   PMID:34445216   PMID:35844135   PMID:35914814   PMID:38828726  



DSCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382140,010,999 - 40,847,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2140,010,999 - 40,847,158 (-)EnsemblGRCh38hg38GRCh38
GRCh372141,382,926 - 42,219,084 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362140,306,213 - 41,140,909 (-)NCBINCBI36Build 36hg18NCBI36
Build 342140,306,212 - 41,140,909NCBI
Celera2126,582,079 - 27,417,510 (-)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,884,190 - 27,191,292 (-)NCBIHuRef
HuRef2127,195,979 - 27,689,477 (-)NCBIHuRef
CHM1_12140,945,084 - 41,641,065 (-)NCBICHM1_1
T2T-CHM13v2.02138,398,213 - 39,235,595 (-)NCBIT2T-CHM13v2.0
Dscam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391696,388,652 - 96,971,935 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1696,392,040 - 96,971,952 (-)EnsemblGRCm39 Ensembl
GRCm381696,587,452 - 97,171,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,590,840 - 97,170,752 (-)EnsemblGRCm38mm10GRCm38
MGSCv371696,813,686 - 97,392,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361696,697,642 - 97,275,645 (-)NCBIMGSCv36mm8
Celera1697,670,177 - 98,230,565 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1657.02NCBI
Dscam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81149,391,385 - 49,976,861 (-)NCBIGRCr8
mRatBN7.21135,921,924 - 36,507,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,926,896 - 36,507,415 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1144,576,796 - 45,149,722 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01137,248,172 - 37,821,087 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,401,719 - 36,980,976 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01137,004,776 - 37,599,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1137,004,902 - 37,253,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01140,530,620 - 41,112,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41136,954,750 - 37,230,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11137,012,825 - 37,275,047 (-)NCBI
Celera1135,824,419 - 36,395,688 (-)NCBICelera
Cytogenetic Map11q11NCBI
Dscam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,986,108 - 40,473,200 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,985,501 - 40,473,330 (-)NCBIChiLan1.0ChiLan1.0
DSCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22236,111,075 - 36,938,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,966,996 - 31,793,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02126,366,295 - 27,192,617 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,699,077 - 40,054,961 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2139,699,077 - 40,524,164 (-)Ensemblpanpan1.1panPan2
DSCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13134,666,300 - 35,277,651 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3134,669,424 - 35,400,160 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3133,951,978 - 34,617,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03134,180,996 - 34,914,940 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3134,181,499 - 34,914,869 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13134,050,877 - 34,780,483 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03134,056,656 - 34,784,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03134,548,894 - 35,278,352 (-)NCBIUU_Cfam_GSD_1.0
Dscam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497134,128,713 - 34,780,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365002,686,850 - 3,338,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365002,686,847 - 3,339,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13203,567,129 - 204,313,820 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113203,566,765 - 204,292,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,656,399 - 213,751,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DSCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1283,969,555 - 84,738,661 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605411,797,452 - 12,609,644 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dscam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474528,969,498 - 29,559,968 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474528,969,464 - 29,560,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in DSCAM
288 total Variants

1 to 10 of 357 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000050445] Chr21:7749532..46670405 [GRCh38]
Chr21:15499847..48090317 [GRCh37]
Chr21:14421718..46914745 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 21q22.13-22.3(chr21:37135738-42434515)x1 copy number loss See cases [RCV000051047] Chr21:37135738..42434515 [GRCh38]
Chr21:38508038..43854625 [GRCh37]
Chr21:37429908..42727694 [NCBI36]
Chr21:21q22.13-22.3		 pathogenic
GRCh37/hg19 21q22.1-22.3(chr21:35527952-44298520)x1 copy number loss See cases [RCV000052807] Chr21:35527952..44298520 [GRCh37]
Chr21:34449822..43171589 [NCBI36]
Chr21:21q22.1-22.3		 pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:35027972-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|See cases [RCV000052836] Chr21:35027972..46670405 [GRCh38]
Chr21:36400269..48090317 [GRCh37]
Chr21:35322139..46914745 [NCBI36]
Chr21:21q22.12-22.3		 pathogenic
GRCh38/hg38 21q22.13-22.3(chr21:38273492-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|See cases [RCV000052838] Chr21:38273492..46670405 [GRCh38]
Chr21:39645414..48090317 [GRCh37]
Chr21:38567284..46914745 [NCBI36]
Chr21:21q22.13-22.3		 pathogenic
GRCh38/hg38 21q22.2-22.3(chr21:40127825-46670546)x1 copy number loss See cases [RCV000052839] Chr21:40127825..46670546 [GRCh38]
Chr21:41499752..48090458 [GRCh37]
Chr21:40421622..46914886 [NCBI36]
Chr21:21q22.2-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053042] Chr21:7749532..46623792 [GRCh38]
Chr21:14595524..48043704 [GRCh37]
Chr21:13517395..46868132 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053043] Chr21:7749532..46623792 [GRCh38]
Chr21:14629063..48043704 [GRCh37]
Chr21:13550934..46868132 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670546)x3 copy number gain See cases [RCV000053045] Chr21:7749532..46670546 [GRCh38]
Chr21:15499647..48090458 [GRCh37]
Chr21:14421518..46914886 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46661140)x3 copy number gain See cases [RCV000053065] Chr21:7749532..46661140 [GRCh38]
Chr21:15499647..48081052 [GRCh37]
Chr21:14421518..46905480 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
1 to 10 of 357 rows

Predicted Target Of
Summary Value
Count of predictions:997
Count of miRNA genes:665
Interacting mature miRNAs:751
Transcripts:ENST00000400454, ENST00000404019
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 67 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597145239GWAS1241313_Hsystolic blood pressure QTL GWAS1241313 (human)0.0000005systolic blood pressuresystolic blood pressure (CMO:0000004)214002039940020400Human
407052098GWAS701074_Htriacylglycerol 44:1 measurement QTL GWAS701074 (human)0.000009blood triglyceride amount (VT:0002644)214052401540524016Human
597179547GWAS1275621_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1275621 (human)0.000002SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)214049541640495417Human
597086096GWAS1182170_Hbody mass index QTL GWAS1182170 (human)9e-10body mass indexbody mass index (BMI) (CMO:0000105)214005524140055242Human
596980371GWAS1099890_Hmemory performance QTL GWAS1099890 (human)0.000005memory performance214068643940686440Human
597194399GWAS1290473_Hmemory performance QTL GWAS1290473 (human)0.000005memory performance214068643940686440Human
597246482GWAS1342556_Hschizophrenia QTL GWAS1342556 (human)0.000006schizophrenia214031684040316841Human
407123541GWAS772517_Hanxiety QTL GWAS772517 (human)0.0000003anxiety214051465640514657Human
597593354GWAS1650214_Hnarcolepsy QTL GWAS1650214 (human)7e-13narcolepsy214066532140665322Human
596970627GWAS1090146_Hprogression free survival, response to tyrosine kinase inhibitor QTL GWAS1090146 (human)6e-09progression free survival, response to tyrosine kinase inhibitor214031147840311479Human

1 to 10 of 67 rows
D21S1887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,215,270 - 42,215,412UniSTSGRCh37
Build 362141,137,140 - 41,137,282RGDNCBI36
Celera2127,413,741 - 27,413,883RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,685,711 - 27,685,843UniSTS
Marshfield Genetic Map2145.87UniSTS
Marshfield Genetic Map2145.87RGD
Genethon Genetic Map2150.7UniSTS
TNG Radiation Hybrid Map2116093.0UniSTS
deCODE Assembly Map2154.33UniSTS
Stanford-G3 RH Map211371.0UniSTS
GeneMap99-GB4 RH Map21221.42UniSTS
Whitehead-YAC Contig Map21 UniSTS
NCBI RH Map21341.2UniSTS
GeneMap99-G3 RH Map211371.0UniSTS
D21S1906  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,128,814 - 42,128,985UniSTSGRCh37
Build 362141,050,684 - 41,050,855RGDNCBI36
Celera2127,327,298 - 27,327,471RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,599,347 - 27,599,520UniSTS
Marshfield Genetic Map2145.87UniSTS
Marshfield Genetic Map2145.87RGD
Genethon Genetic Map2150.7UniSTS
deCODE Assembly Map2154.03UniSTS
D21S1889  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,824,795 - 41,825,060UniSTSGRCh37
Build 362140,746,665 - 40,746,930RGDNCBI36
Celera2127,023,652 - 27,023,917RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,295,122 - 27,295,401UniSTS
Marshfield Genetic Map2145.26RGD
Marshfield Genetic Map2145.26UniSTS
Genethon Genetic Map2150.0UniSTS
TNG Radiation Hybrid Map2116093.0UniSTS
D21S1840  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,029,251 - 42,029,451UniSTSGRCh37
Build 362140,951,121 - 40,951,321RGDNCBI36
Celera2127,227,709 - 27,227,909RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,499,773 - 27,499,973UniSTS
Whitehead-RH Map21203.7UniSTS
Whitehead-YAC Contig Map21 UniSTS
SHGC-52082  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,029,253 - 42,029,412UniSTSGRCh37
Build 362140,951,123 - 40,951,282RGDNCBI36
Celera2127,227,711 - 27,227,870RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,499,775 - 27,499,934UniSTS
TNG Radiation Hybrid Map2115980.0UniSTS
G34687  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,504,331 - 41,504,468UniSTSGRCh37
Build 362140,426,201 - 40,426,338RGDNCBI36
Celera2126,702,057 - 26,702,194RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,974,478 - 26,974,615UniSTS
SHGC-52084  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,993,516 - 41,993,608UniSTSGRCh37
Build 362140,915,386 - 40,915,478RGDNCBI36
Celera2127,192,233 - 27,192,325RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,464,325 - 27,464,417UniSTS
TNG Radiation Hybrid Map2115969.0UniSTS
SHGC-51860  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,493,945 - 41,494,065UniSTSGRCh37
Build 362140,415,815 - 40,415,935RGDNCBI36
Celera2126,691,671 - 26,691,791RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,963,812 - 26,963,932UniSTS
TNG Radiation Hybrid Map2115780.0UniSTS
SHGC-11765  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,493,945 - 41,494,052UniSTSGRCh37
Build 362140,415,815 - 40,415,922RGDNCBI36
Celera2126,691,671 - 26,691,778RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,963,812 - 26,963,919UniSTS
RH68680  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,111,921 - 42,112,064UniSTSGRCh37
Build 362141,033,791 - 41,033,934RGDNCBI36
Celera2127,310,398 - 27,310,541RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,582,445 - 27,582,588UniSTS
GeneMap99-GB4 RH Map21220.81UniSTS
G29042  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,742,048 - 41,742,157UniSTSGRCh37
Build 362140,663,918 - 40,664,027RGDNCBI36
Celera2126,941,195 - 26,941,304RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,212,635 - 27,212,744UniSTS
SHGC-6874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,917,083 - 41,917,376UniSTSGRCh37
Build 362140,838,953 - 40,839,246RGDNCBI36
Celera2127,115,798 - 27,116,091RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,387,767 - 27,388,060UniSTS
TNG Radiation Hybrid Map2115935.0UniSTS
SHGC-6872  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,187,589 - 42,187,830UniSTSGRCh37
Build 362141,109,459 - 41,109,700RGDNCBI36
Celera2127,386,062 - 27,386,303RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,658,036 - 27,658,277UniSTS
TNG Radiation Hybrid Map2116062.0UniSTS
G43599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,975,873 - 41,976,001UniSTSGRCh37
Build 362140,897,743 - 40,897,871RGDNCBI36
Celera2127,174,588 - 27,174,716RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,446,552 - 27,446,680UniSTS
G48509  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,824,794 - 41,824,925UniSTSGRCh37
Build 362140,746,664 - 40,746,795RGDNCBI36
Celera2127,023,651 - 27,023,782RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,295,121 - 27,295,252UniSTS
TNG Radiation Hybrid Map2115921.0UniSTS
SHGC-77994  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,212,694 - 42,213,040UniSTSGRCh37
Build 362141,134,564 - 41,134,910RGDNCBI36
Celera2127,411,165 - 27,411,511RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,683,135 - 27,683,481UniSTS
TNG Radiation Hybrid Map2116086.0UniSTS
G59520  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,975,874 - 41,975,993UniSTSGRCh37
Build 362140,897,744 - 40,897,863RGDNCBI36
Celera2127,174,589 - 27,174,708RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,446,553 - 27,446,672UniSTS
TNG Radiation Hybrid Map2115961.0UniSTS
D21S348  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,917,145 - 41,917,386UniSTSGRCh37
Build 362140,839,015 - 40,839,256RGDNCBI36
Celera2127,115,860 - 27,116,101RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,387,829 - 27,388,070UniSTS
D21S349  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,187,479 - 42,187,811UniSTSGRCh37
Build 362141,109,349 - 41,109,681RGDNCBI36
Celera2127,385,952 - 27,386,284RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,657,926 - 27,658,258UniSTS
D21S15  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,757,814 - 41,758,032UniSTSGRCh37
Build 362140,679,684 - 40,679,902RGDNCBI36
Celera2126,956,901 - 26,957,119RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,228,342 - 27,228,560UniSTS
D21S23  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,992,435 - 41,992,602UniSTSGRCh37
Build 362140,914,305 - 40,914,472RGDNCBI36
Celera2127,191,152 - 27,191,319RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,463,244 - 27,463,411UniSTS
D21S1729E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,810,963 - 41,811,117UniSTSGRCh37
Build 362140,732,833 - 40,732,987RGDNCBI36
Celera2127,010,061 - 27,010,215RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,281,526 - 27,281,680UniSTS
SHGC-144335  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,171,251 - 42,171,544UniSTSGRCh37
Build 362141,093,121 - 41,093,414RGDNCBI36
Celera2127,369,724 - 27,370,017RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,641,794 - 27,642,087UniSTS
TNG Radiation Hybrid Map2116051.0UniSTS
SHGC-144398  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,934,831 - 41,935,102UniSTSGRCh37
Build 362140,856,701 - 40,856,972RGDNCBI36
Celera2127,133,549 - 27,133,820RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,405,521 - 27,405,792UniSTS
TNG Radiation Hybrid Map2115943.0UniSTS
SHGC-144799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,685,252 - 41,685,568UniSTSGRCh37
Build 362140,607,122 - 40,607,438RGDNCBI36
Celera2126,884,394 - 26,884,710RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,156,162 - 27,156,478UniSTS
TNG Radiation Hybrid Map2115860.0UniSTS
G29047  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,507,545 - 41,507,659UniSTSGRCh37
Build 362140,429,415 - 40,429,529RGDNCBI36
Celera2126,705,271 - 26,705,385RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,977,692 - 26,977,806UniSTS
G29038  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,498,723 - 41,498,847UniSTSGRCh37
Build 362140,420,593 - 40,420,717RGDNCBI36
Celera2126,696,449 - 26,696,573RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,968,994 - 26,969,118UniSTS
SHGC-152951  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,215,267 - 42,215,584UniSTSGRCh37
Build 362141,137,137 - 41,137,454RGDNCBI36
Celera2127,413,738 - 27,414,055RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,685,708 - 27,686,015UniSTS
TNG Radiation Hybrid MapY357.0UniSTS
PMC310729P5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,708,637 - 41,708,935UniSTSGRCh37
Build 362140,630,507 - 40,630,805RGDNCBI36
Celera2126,907,779 - 26,908,077RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,179,544 - 27,179,842UniSTS
DSCAM__4776  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,384,461 - 41,385,291UniSTSGRCh37
Build 362140,306,331 - 40,307,161RGDNCBI36
Celera2126,582,197 - 26,583,028RGD
D21S1806  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,504,382 - 41,504,490UniSTSGRCh37
Build 362140,426,252 - 40,426,360RGDNCBI36
Celera2126,702,108 - 26,702,216RGD
Cytogenetic Map21q22.2UniSTS
Whitehead-RH Map21205.5UniSTS
Whitehead-YAC Contig Map21 UniSTS
D5S1845  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,993,535 - 41,993,636UniSTSGRCh37
Build 362140,915,405 - 40,915,506RGDNCBI36
Celera2127,192,252 - 27,192,353RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,464,344 - 27,464,445UniSTS
Whitehead-YAC Contig Map5 UniSTS
SHGC-87651  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,810,850 - 41,811,108UniSTSGRCh37
Build 362140,732,720 - 40,732,978RGDNCBI36
Celera2127,009,948 - 27,010,206RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,281,413 - 27,281,671UniSTS
TNG Radiation Hybrid Map2115910.0UniSTS
GeneMap99-GB4 RH Map21217.35UniSTS
Whitehead-RH Map21201.9UniSTS
NCBI RH Map21368.5UniSTS
D21S1965  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,059,957 - 42,060,068UniSTSGRCh37
Build 362140,981,827 - 40,981,938RGDNCBI36
Celera2127,258,435 - 27,258,546RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,530,483 - 27,530,594UniSTS
TNG Radiation Hybrid Map2116006.0UniSTS
Whitehead-RH Map21203.7UniSTS
Whitehead-YAC Contig Map21 UniSTS
STS-U44101  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,418,964 - 41,419,085UniSTSGRCh37
Build 362140,340,834 - 40,340,955RGDNCBI36
Celera2126,616,691 - 26,616,812RGD
Cytogenetic Map21q22.2UniSTS
HuRef2126,888,894 - 26,889,015UniSTS
TNG Radiation Hybrid Map2115766.0UniSTS
GeneMap99-GB4 RH Map21215.63UniSTS
NCBI RH Map21370.1UniSTS
SHGC-53823  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,384,879 - 41,385,035UniSTSGRCh37
Build 362140,306,749 - 40,306,905RGDNCBI36
Celera2126,582,616 - 26,582,772RGD
Cytogenetic Map21q22.2UniSTS
TNG Radiation Hybrid Map2115745.0UniSTS
G29050  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372141,561,803 - 41,562,002UniSTSGRCh37
Build 362140,483,673 - 40,483,872RGDNCBI36
Celera2126,759,521 - 26,759,720RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,033,003 - 27,033,202UniSTS
SHGC-51874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372142,215,454 - 42,215,589UniSTSGRCh37
Build 362141,137,324 - 41,137,459RGDNCBI36
Celera2127,413,925 - 27,414,060RGD
Cytogenetic Map21q22.2UniSTS
HuRef2127,685,885 - 27,686,020UniSTS
TNG Radiation Hybrid Map2116097.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
877 2060 2050 1497 4423 1444 1796 2 445 751 299 1569 4446 4020 24 3665 527 1360 1284 154 1


1 to 30 of 42 rows
RefSeq Transcripts NM_001271534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC277730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF023449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF023450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF042090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF042091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF043945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF165176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF217525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL163281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL163282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL163283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE503065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM684380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 42 rows

Ensembl Acc Id: ENST00000400454   ⟹   ENSP00000383303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2140,010,999 - 40,847,158 (-)Ensembl
Ensembl Acc Id: ENST00000404019   ⟹   ENSP00000385342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2140,012,901 - 40,353,654 (-)Ensembl
Ensembl Acc Id: ENST00000617870   ⟹   ENSP00000478698
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2140,012,414 - 40,369,270 (-)Ensembl
RefSeq Acc Id: NM_001271534   ⟹   NP_001258463
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382140,010,999 - 40,847,158 (-)NCBI
GRCh372141,384,343 - 42,219,039 (-)NCBI
HuRef2127,195,979 - 27,689,477 (-)NCBI
HuRef2126,884,190 - 27,191,292 (-)NCBI
CHM1_12140,945,084 - 41,641,065 (-)NCBI
T2T-CHM13v2.02138,398,213 - 39,235,595 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001389   ⟹   NP_001380
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382140,010,999 - 40,847,158 (-)NCBI
GRCh372141,384,343 - 42,219,039 (-)ENTREZGENE
GRCh372141,384,343 - 42,219,039 (-)NCBI
Build 362140,306,213 - 41,140,909 (-)NCBI Archive
HuRef2127,195,979 - 27,689,477 (-)ENTREZGENE
HuRef2126,884,190 - 27,191,292 (-)NCBI
CHM1_12140,945,084 - 41,641,065 (-)NCBI
T2T-CHM13v2.02138,398,213 - 39,235,595 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073202
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382140,010,999 - 40,847,158 (-)NCBI
HuRef2126,884,190 - 27,191,292 (-)NCBI
HuRef2127,195,979 - 27,689,477 (-)NCBI
CHM1_12140,945,084 - 41,641,065 (-)NCBI
T2T-CHM13v2.02138,398,213 - 39,235,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017028281   ⟹   XP_016883770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382140,012,413 - 40,369,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054324369   ⟹   XP_054180344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02138,398,213 - 38,758,936 (-)NCBI
RefSeq Acc Id: NP_001380   ⟸   NM_001389
- Peptide Label: isoform CHD2-42 precursor
- UniProtKB: O60468 (UniProtKB/Swiss-Prot),   O60469 (UniProtKB/Swiss-Prot),   Q59GH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258463   ⟸   NM_001271534
- Peptide Label: isoform 2 precursor
- UniProtKB: Q59GH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016883770   ⟸   XM_017028281
- Peptide Label: isoform X1
- UniProtKB: Q8WY19 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000383303   ⟸   ENST00000400454
Ensembl Acc Id: ENSP00000385342   ⟸   ENST00000404019
Fibronectin type-III   Ig-like   Ig-like C2-type

Name Modeler Protein Id AA Range Protein Structure
AF-O60469-F1-model_v2 AlphaFold O60469 1-2012 view protein structure

RGD ID:13602862
Promoter ID:EPDNEW_H27616
Type:initiation region
Name:DSCAM_1
Description:DS cell adhesion molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382140,847,158 - 40,847,218EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
COSMIC DSCAM COSMIC
Ensembl Genes ENSG00000171587 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000291561 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000400454 ENTREZGENE
  ENST00000400454.6 UniProtKB/Swiss-Prot
  ENST00000617870 ENTREZGENE
  ENST00000708009.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
GTEx ENSG00000171587 GTEx
  ENSG00000291561 GTEx
HGNC ID HGNC:3039 ENTREZGENE
Human Proteome Map DSCAM Human Proteome Map
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
KEGG Report hsa:1826 UniProtKB/Swiss-Prot
NCBI Gene 1826 ENTREZGENE
OMIM 602523 OMIM
PANTHER CONTACTIN UniProtKB/Swiss-Prot
  PROTEIN SIDEKICK UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
PharmGKB PA27491 PharmGKB
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A0A087WUI7 ENTREZGENE, UniProtKB/TrEMBL
  DSCAM_HUMAN UniProtKB/Swiss-Prot
1 to 40 of 45 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-17 DSCAM  DS cell adhesion molecule    Down syndrome cell adhesion molecule  Symbol and/or name change 5135510 APPROVED