GWAS1099890_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1099890_H (memory performance QTL GWAS1099890 (human)) Homo sapiens

Symbol: GWAS1099890_H
Name: memory performance QTL GWAS1099890 (human)
RGD ID: 596980371
Trait: memory performance
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382140,686,439 - 40,686,440RGD_MAPPER_PIPELINEGRCh38
GRCh372142,058,365 - 42,058,366RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732493DSCAMDS cell adhesion molecule214001099940847158Human


Peak: (rs62224166)
Human AssemblyChrPosition (strand)Source
GRCh382140,686,439 - 40,686,440RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596980371GWAS1099890_Hmemory performance QTL GWAS1099890 (human)0.000005memory performance214068643940686440Human
597194399GWAS1290473_Hmemory performance QTL GWAS1290473 (human)0.000005memory performance214068643940686440Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human
597160491GWAS1256565_Hlipid measurement QTL GWAS1256565 (human)0.000006lipid measurementblood lipid measurement (CMO:0000050)214068643940686440Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1256565_H GCST90133949 Glycocholenate sulfate levels in elite athletes 490 individuals ? NR 0.000006 5.222 rs62224166 0.94414395 lipid measurement (EFO:0004529)
 PMID:31882771
GWAS1290473_H GCST90448431 Baseline memory in impaired cognition 869 African ancestry females ? NR 0.000005 5.302 rs62224166 0.778518 memory performance (EFO:0004874)
 PMID:37984853
Database
Acc Id
Source(s)
GWAS Catalog GCST90448431 GWAS Catalog

Note Type Note Reference