Pth1r (parathyroid hormone 1 receptor) - Rat Genome Database

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Gene: Pth1r (parathyroid hormone 1 receptor) Mus musculus
Analyze
Symbol: Pth1r
Name: parathyroid hormone 1 receptor
RGD ID: 731313
MGI Page MGI
Description: Enables parathyroid hormone receptor activity. Acts upstream of or within several processes, including G protein-coupled receptor signaling pathway; bone resorption; and osteoblast development. Predicted to be located in several cellular components, including apical plasma membrane; basolateral plasma membrane; and brush border membrane. Predicted to be integral component of plasma membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including extraembryonic component; integumental system; limb; lung; and skeleton. Human ortholog(s) of this gene implicated in Eiken syndrome; Jansen's metaphyseal chondrodysplasia; chondrodysplasia Blomstrand type; osteochondrodysplasia; and primary failure of tooth eruption. Orthologous to human PTH1R (parathyroid hormone 1 receptor); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; G protein mediated signaling pathway via Galphas family; parathyroid hormone signaling pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: parathyroid hormone receptor 1; parathyroid hormone/parathyroid hormone-related peptide receptor; PPR; PTH; PTH-related peptide receptor; PTH/PTHr receptor; PTH/PTHrP receptor; PTH/PTHrP type I receptor; PTH1 receptor; Pthr; Pthr1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,551,132 - 110,576,213 (-)NCBIGRCm39mm39
GRCm39 Ensembl9110,551,153 - 110,576,213 (-)Ensembl
GRCm389110,722,085 - 110,747,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,722,085 - 110,747,145 (-)EnsemblGRCm38mm10GRCm38
MGSCv379110,624,589 - 110,649,649 (-)NCBIGRCm37mm9NCBIm37
MGSCv369110,567,070 - 110,587,116 (-)NCBImm8
Celera9110,451,883 - 110,476,939 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
calciol  (EXP)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (EXP)
clofibric acid  (ISO)
cytarabine  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
enalapril  (ISO)
endosulfan  (ISO)
fenvalerate  (ISO)
folic acid  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (ISO)
glycerol 2-phosphate  (EXP)
glycitein  (ISO)
glycitin  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
L-ascorbic acid  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
losartan  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methylmercury(1+)  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
propiconazole  (EXP)
SB 431542  (ISO)
SCH 23390  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP,ISO)
telmisartan  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tremolite asbestos  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc dichloride  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood homeostasis  (IAGP)
abnormal bone marrow development  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal brain morphology  (IEA)
abnormal chondrocyte differentiation  (IAGP)
abnormal circulating phosphate level  (IAGP)
abnormal ductus venosus valve morphology  (IEA)
abnormal hyaline cartilage morphology  (IAGP)
abnormal inferior vena cava valve morphology  (IEA)
abnormal lens morphology  (IEA)
abnormal limb morphology  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone epiphyseal plate proliferative zone  (IAGP)
abnormal long bone hypertrophic chondrocyte zone  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal synchondrosis  (IAGP)
abnormal thymus morphology  (IEA)
abnormal trabecular bone morphology  (IAGP)
abnormal vertebral artery topology  (IEA)
absent ductus venosus valve  (IEA)
absent segment of posterior cerebral artery  (IEA)
anastomosis between internal carotid artery and basilar artery  (IEA)
atelectasis  (IAGP)
blood in lymph vessels  (IEA)
chondrodystrophy  (IAGP)
decreased bone mineral content  (IEA)
decreased bone mineral density  (IAGP)
decreased chondrocyte number  (IAGP)
decreased circulating parathyroid hormone level  (IAGP)
decreased circulating potassium level  (IEA)
decreased embryo size  (IAGP)
decreased fetal size  (IAGP)
decreased lean body mass  (IEA)
decreased length of long bones  (IAGP)
decreased long bone epiphyseal plate size  (IAGP)
decreased total retina thickness  (IEA)
dilated bile duct  (IEA)
domed cranium  (IAGP)
embryonic growth retardation  (IAGP)
enlarged lymphatic vessel  (IEA)
enlarged paraumbilical vein  (IEA)
foramen magnum stenosis  (IAGP)
herniated liver  (IEA)
increased circulating calcium level  (IAGP)
increased hemangioma incidence  (IEA)
increased long bone epiphyseal plate size  (IAGP)
jugular vein stenosis  (IEA)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
long tibia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
placenta hemorrhage  (IAGP)
postnatal growth retardation  (IAGP)
premature chondrocyte differentiation  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
protruding tongue  (IAGP)
respiratory failure  (IAGP)
retropharyngeal edema  (IEA)
short limbs  (IAGP)
short mandible  (IAGP)
short snout  (IAGP)
short tibia  (IAGP)
small lung  (IAGP)
References

Additional References at PubMed
PMID:1354597   PMID:7524627   PMID:7596823   PMID:8020952   PMID:8185578   PMID:8197183   PMID:8641130   PMID:8662546   PMID:8662561   PMID:8895385   PMID:8977437   PMID:8986793  
PMID:9075739   PMID:9789035   PMID:9806774   PMID:9811582   PMID:9832460   PMID:9932288   PMID:10049363   PMID:10213384   PMID:10330492   PMID:10349636   PMID:10409496   PMID:10449432  
PMID:10464095   PMID:10465785   PMID:10530918   PMID:10696074   PMID:10742104   PMID:10861287   PMID:10934642   PMID:11042159   PMID:11076861   PMID:11133164   PMID:11160151   PMID:11160153  
PMID:11171335   PMID:11171337   PMID:11217851   PMID:11285276   PMID:11306604   PMID:11371614   PMID:11566859   PMID:11606467   PMID:11702786   PMID:11713230   PMID:11832378   PMID:11850178  
PMID:11897779   PMID:11937494   PMID:12000792   PMID:12050144   PMID:12086466   PMID:12140191   PMID:12192060   PMID:12194850   PMID:12205107   PMID:12379497   PMID:12413769   PMID:12414734  
PMID:12466851   PMID:12469909   PMID:12477932   PMID:12538525   PMID:12586782   PMID:12671688   PMID:12705476   PMID:12708796   PMID:12713572   PMID:12960101   PMID:14522949   PMID:14722611  
PMID:14745966   PMID:14749384   PMID:14993235   PMID:15020674   PMID:15107406   PMID:15124025   PMID:15132997   PMID:15355563   PMID:15459318   PMID:15563592   PMID:15604097   PMID:15611335  
PMID:15652702   PMID:15713743   PMID:15771625   PMID:15782199   PMID:15880431   PMID:15901283   PMID:15951842   PMID:15963767   PMID:16099817   PMID:16141072   PMID:16141073   PMID:16236767  
PMID:16278811   PMID:16284117   PMID:16387856   PMID:16421188   PMID:16476422   PMID:16537572   PMID:16574786   PMID:16672315   PMID:16675960   PMID:16783635   PMID:16783882   PMID:16815385  
PMID:16818445   PMID:16829211   PMID:16840548   PMID:16935278   PMID:17014841   PMID:17065231   PMID:17185824   PMID:17191253   PMID:17199045   PMID:17301089   PMID:17317770   PMID:17332067  
PMID:17336904   PMID:17500070   PMID:17510210   PMID:17525124   PMID:17526947   PMID:17544391   PMID:17660199   PMID:18025304   PMID:18052755   PMID:18061568   PMID:18063434   PMID:18456591  
PMID:18539921   PMID:18597638   PMID:18946036   PMID:19035497   PMID:19224984   PMID:19252479   PMID:19389373   PMID:19557172   PMID:19574446   PMID:19737917   PMID:19761883   PMID:19767744  
PMID:19906842   PMID:19948490   PMID:20059955   PMID:20089971   PMID:20139972   PMID:20495570   PMID:20501677   PMID:20530870   PMID:20808842   PMID:20920500   PMID:20929987   PMID:20951345  
PMID:20974122   PMID:21140374   PMID:21173257   PMID:21220409   PMID:21267068   PMID:21367821   PMID:21445361   PMID:21494559   PMID:21606205   PMID:21726676   PMID:21866553   PMID:21873635  
PMID:21911092   PMID:22190639   PMID:22206015   PMID:22308018   PMID:22338074   PMID:22342532   PMID:22393015   PMID:22538810   PMID:22843502   PMID:22896038   PMID:23160461   PMID:23235147  
PMID:23238123   PMID:23300710   PMID:23322385   PMID:23333759   PMID:23533279   PMID:23729679   PMID:23792766   PMID:23963454   PMID:24349082   PMID:24551245   PMID:24760772   PMID:24780627  
PMID:24781502   PMID:24821091   PMID:24877630   PMID:24930703   PMID:24936779   PMID:25107907   PMID:25196529   PMID:25228504   PMID:25432534   PMID:25529820   PMID:25587042   PMID:25761772  
PMID:25808752   PMID:26052897   PMID:26191777   PMID:26244796   PMID:26428657   PMID:26620087   PMID:26647715   PMID:26669699   PMID:26794256   PMID:26859889   PMID:26912788   PMID:27068606  
PMID:27070462   PMID:27402918   PMID:27704638   PMID:27930311   PMID:27996060   PMID:28162969   PMID:28185240   PMID:28378742   PMID:28727763   PMID:28758904   PMID:28934958   PMID:29121993  
PMID:29401593   PMID:29539633   PMID:29659575   PMID:29993278   PMID:30053608   PMID:30509999   PMID:30682096   PMID:30685387   PMID:30902975   PMID:31382618   PMID:31430259   PMID:31536386  
PMID:31987988   PMID:32039485   PMID:32160132   PMID:32290615   PMID:32585127   PMID:32928505  


Genomics

Comparative Map Data
Pth1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,551,132 - 110,576,213 (-)NCBIGRCm39mm39
GRCm39 Ensembl9110,551,153 - 110,576,213 (-)Ensembl
GRCm389110,722,085 - 110,747,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,722,085 - 110,747,145 (-)EnsemblGRCm38mm10GRCm38
MGSCv379110,624,589 - 110,649,649 (-)NCBIGRCm37mm9NCBIm37
MGSCv369110,567,070 - 110,587,116 (-)NCBImm8
Celera9110,451,883 - 110,476,939 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.56NCBI
PTH1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl346,877,721 - 46,903,799 (+)EnsemblGRCh38hg38GRCh38
GRCh38346,877,689 - 46,903,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37346,919,211 - 46,945,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,894,240 - 46,920,293 (+)NCBINCBI36hg18NCBI36
Build 34346,894,239 - 46,920,291NCBI
Celera346,857,742 - 46,883,797 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef346,962,340 - 46,988,376 (+)NCBIHuRef
CHM1_1346,869,336 - 46,895,385 (+)NCBICHM1_1
Pth1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28110,693,910 - 110,725,458 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8110,697,485 - 110,719,729 (-)Ensembl
Rnor_6.08118,984,531 - 119,012,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,988,053 - 119,012,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,325,190 - 118,353,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,099,763 - 115,119,362 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18115,119,118 - 115,139,954 (-)NCBI
Celera8109,981,641 - 110,001,215 (-)NCBICelera
Cytogenetic Map8q32NCBI
Pth1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,273,431 - 25,296,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,274,269 - 25,291,984 (-)NCBIChiLan1.0ChiLan1.0
PTH1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1347,882,369 - 47,905,573 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,894,901 - 47,905,431 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0346,777,945 - 46,804,039 (+)NCBIMhudiblu_PPA_v0panPan3
PTH1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,905,265 - 41,924,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,905,273 - 41,925,794 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,821,510 - 41,840,986 (-)NCBI
ROS_Cfam_1.02042,386,625 - 42,411,859 (-)NCBI
UMICH_Zoey_3.12041,629,493 - 41,648,962 (-)NCBI
UNSW_CanFamBas_1.02042,030,456 - 42,049,920 (-)NCBI
UU_Cfam_GSD_1.02042,311,419 - 42,330,892 (-)NCBI
Pth1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,124,949 - 201,144,052 (+)NCBI
SpeTri2.0NW_004936596674,088 - 693,191 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTH1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,753,308 - 29,775,371 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,749,940 - 29,775,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,998,092 - 33,023,626 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTH1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,287,877 - 8,309,736 (+)NCBI
ChlSab1.1 Ensembl228,289,398 - 8,311,256 (+)Ensembl
Vero_WHO_p1.0NW_023666041158,837,510 - 158,863,786 (-)NCBI
Pth1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,371,614 - 74,392,344 (-)NCBI

Position Markers
Pthr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,722,258 - 110,722,623UniSTSGRCm38
MGSCv379110,624,762 - 110,625,127UniSTSGRCm37
Celera9110,452,056 - 110,452,421UniSTS
Cytogenetic Map9FUniSTS
cM Map958.0UniSTS
PMC135637P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,721,969 - 110,722,267UniSTSGRCm38
MGSCv379110,624,473 - 110,624,771UniSTSGRCm37
Celera9110,451,767 - 110,452,065UniSTS
Cytogenetic Map9FUniSTS
cM Map958.0UniSTS
D2S2154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,725,851 - 110,726,027UniSTSGRCm38
GRCm388122,107,521 - 122,108,207UniSTSGRCm38
MGSCv379110,628,355 - 110,628,531UniSTSGRCm37
MGSCv378124,631,421 - 124,632,107UniSTSGRCm37
Celera9110,455,649 - 110,455,825UniSTS
Celera8126,334,738 - 126,335,424UniSTS
Cytogenetic Map9FUniSTS
Cytogenetic Map11DUniSTS
cM Map958.0UniSTS
Pthr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389110,727,700 - 110,727,767UniSTSGRCm38
MGSCv379110,630,204 - 110,630,271UniSTSGRCm37
Celera9110,457,497 - 110,457,564UniSTS
Cytogenetic Map9FUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:111
Interacting mature miRNAs:112
Transcripts:ENSMUST00000006005, ENSMUST00000166716
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001083935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001083936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI607947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB614354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY005592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB192926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L28108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X78936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000006005   ⟹   ENSMUSP00000006005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,551,210 - 110,571,787 (-)Ensembl
GRCm38.p6 Ensembl9110,722,142 - 110,742,719 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166716   ⟹   ENSMUSP00000132064
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,551,156 - 110,572,754 (-)Ensembl
GRCm38.p6 Ensembl9110,722,088 - 110,743,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196057   ⟹   ENSMUSP00000143470
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,556,526 - 110,572,716 (-)Ensembl
GRCm38.p6 Ensembl9110,727,458 - 110,743,648 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198865   ⟹   ENSMUSP00000143298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,551,153 - 110,576,190 (-)Ensembl
GRCm38.p6 Ensembl9110,722,085 - 110,747,122 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199791   ⟹   ENSMUSP00000142957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,560,650 - 110,576,213 (-)Ensembl
GRCm38.p6 Ensembl9110,731,582 - 110,747,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199862   ⟹   ENSMUSP00000142672
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,556,505 - 110,576,124 (-)Ensembl
GRCm38.p6 Ensembl9110,727,437 - 110,747,056 (-)Ensembl
RefSeq Acc Id: NM_001083935   ⟹   NP_001077404
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,153 - 110,572,754 (-)NCBI
GRCm389110,722,085 - 110,743,686 (-)NCBI
MGSCv379110,624,589 - 110,649,649 (-)RGD
Celera9110,451,883 - 110,476,939 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001083936   ⟹   NP_001077405
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,153 - 110,571,678 (-)NCBI
GRCm389110,722,085 - 110,742,610 (-)NCBI
MGSCv379110,624,589 - 110,649,649 (-)RGD
Celera9110,451,883 - 110,476,939 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011199   ⟹   NP_035329
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,153 - 110,576,213 (-)NCBI
GRCm389110,722,085 - 110,747,145 (-)ENTREZGENE
MGSCv379110,624,589 - 110,649,649 (-)RGD
Celera9110,451,883 - 110,476,939 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511985   ⟹   XP_006512048
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,571,709 (-)NCBI
GRCm389110,722,116 - 110,742,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511988   ⟹   XP_006512051
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,576,198 (-)NCBI
GRCm389110,722,116 - 110,747,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154705   ⟹   XP_036010598
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,571,709 (-)NCBI
RefSeq Acc Id: XM_036154706   ⟹   XP_036010599
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,572,187 (-)NCBI
RefSeq Acc Id: XM_036154707   ⟹   XP_036010600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,552,569 - 110,571,709 (-)NCBI
RefSeq Acc Id: XM_036154708   ⟹   XP_036010601
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,576,208 (-)NCBI
RefSeq Acc Id: XM_036154709   ⟹   XP_036010602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,576,199 (-)NCBI
RefSeq Acc Id: XM_036154710   ⟹   XP_036010603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,572,733 (-)NCBI
RefSeq Acc Id: XM_036154711   ⟹   XP_036010604
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,571,711 (-)NCBI
RefSeq Acc Id: XM_036154712   ⟹   XP_036010605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,576,199 (-)NCBI
RefSeq Acc Id: XM_036154713   ⟹   XP_036010606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,551,132 - 110,574,166 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_035329   ⟸   NM_011199
- Peptide Label: precursor
- UniProtKB: P41593 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001077404   ⟸   NM_001083935
- Peptide Label: precursor
- UniProtKB: P41593 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001077405   ⟸   NM_001083936
- Peptide Label: precursor
- UniProtKB: P41593 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512051   ⟸   XM_006511988
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006512048   ⟸   XM_006511985
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000143298   ⟸   ENSMUST00000198865
RefSeq Acc Id: ENSMUSP00000006005   ⟸   ENSMUST00000006005
RefSeq Acc Id: ENSMUSP00000132064   ⟸   ENSMUST00000166716
RefSeq Acc Id: ENSMUSP00000142672   ⟸   ENSMUST00000199862
RefSeq Acc Id: ENSMUSP00000142957   ⟸   ENSMUST00000199791
RefSeq Acc Id: ENSMUSP00000143470   ⟸   ENSMUST00000196057
RefSeq Acc Id: XP_036010601   ⟸   XM_036154708
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036010605   ⟸   XM_036154712
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036010602   ⟸   XM_036154709
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010606   ⟸   XM_036154713
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036010603   ⟸   XM_036154710
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010599   ⟸   XM_036154706
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010604   ⟸   XM_036154711
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036010598   ⟸   XM_036154705
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010600   ⟸   XM_036154707
- Peptide Label: isoform X4
Promoters
RGD ID:6844993
Promoter ID:MM_KWN:58930
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_001083936
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,645,301 - 110,645,801 (-)MPROMDB
RGD ID:6844994
Promoter ID:MM_KWN:58931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney
Transcripts:NM_001083935
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,646,394 - 110,646,894 (-)MPROMDB
RGD ID:6844995
Promoter ID:MM_KWN:58932
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_011199
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369110,649,351 - 110,649,851 (-)MPROMDB
RGD ID:8671016
Promoter ID:EPDNEW_M13539
Type:multiple initiation site
Name:Pth1r_2
Description:Mus musculus parathyroid hormone 1 receptor , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13540  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,742,584 - 110,742,644EPDNEW
RGD ID:8671020
Promoter ID:EPDNEW_M13540
Type:multiple initiation site
Name:Pth1r_1
Description:Mus musculus parathyroid hormone 1 receptor , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13539  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389110,743,660 - 110,743,720EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97801 AgrOrtholog
Ensembl Genes ENSMUSG00000032492 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000006005 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000132064 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142672 UniProtKB/TrEMBL
  ENSMUSP00000142957 UniProtKB/TrEMBL
  ENSMUSP00000143298 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143470 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006005 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000166716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000196057 UniProtKB/TrEMBL
  ENSMUST00000198865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000199791 UniProtKB/TrEMBL
  ENSMUST00000199862 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_parathyroid_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19228 UniProtKB/Swiss-Prot
MGD MGI:97801 ENTREZGENE
NCBI Gene 19228 ENTREZGENE
PANTHER PTHR45620:SF27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pth1r PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTRHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HormR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF111418 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JE85_MOUSE UniProtKB/TrEMBL
  A0A0G2JEZ1_MOUSE UniProtKB/TrEMBL
  A0A0G2JG89_MOUSE UniProtKB/TrEMBL
  P41593 ENTREZGENE, UniProtKB/Swiss-Prot
  Q91WV4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q62119 UniProtKB/Swiss-Prot
  Q80WU8 UniProtKB/Swiss-Prot