Pth1r (parathyroid hormone 1 receptor) - Rat Genome Database

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Gene: Pth1r (parathyroid hormone 1 receptor) Chinchilla lanigera
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Symbol: Pth1r
Name: parathyroid hormone 1 receptor
RGD ID: 8788630
Description: ENCODES a protein that exhibits parathyroid hormone receptor activity (ortholog); peptide hormone binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; G protein mediated signaling pathway via Galphas family; parathyroid hormone signaling pathway; ASSOCIATED WITH brachydactyly type E1 (ortholog); chondrodysplasia Blomstrand type (ortholog); congenital myopathy 5 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: parathyroid hormone/parathyroid hormone-related peptide receptor
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,273,431 - 25,296,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,274,269 - 25,291,984 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pth1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,273,431 - 25,296,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,274,269 - 25,291,984 (-)NCBIChiLan1.0ChiLan1.0
PTH1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38346,877,721 - 46,903,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl346,877,721 - 46,903,799 (+)EnsemblGRCh38hg38GRCh38
GRCh37346,919,211 - 46,945,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,894,240 - 46,920,293 (+)NCBINCBI36Build 36hg18NCBI36
Build 34346,894,239 - 46,920,291NCBI
Celera346,857,742 - 46,883,797 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,962,340 - 46,988,376 (+)NCBIHuRef
CHM1_1346,869,336 - 46,895,385 (+)NCBICHM1_1
T2T-CHM13v2.0346,894,119 - 46,920,191 (+)NCBIT2T-CHM13v2.0
Pth1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,551,132 - 110,576,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,551,153 - 110,576,213 (-)EnsemblGRCm39 Ensembl
GRCm389110,722,085 - 110,747,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,722,085 - 110,747,145 (-)EnsemblGRCm38mm10GRCm38
MGSCv379110,624,589 - 110,649,649 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,567,070 - 110,587,116 (-)NCBIMGSCv36mm8
Celera9110,451,883 - 110,476,939 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.56NCBI
Pth1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,572,295 - 119,597,405 (-)NCBIGRCr8
mRatBN7.28110,693,910 - 110,725,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,697,485 - 110,719,729 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8116,312,093 - 116,331,737 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08114,511,292 - 114,530,936 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08112,354,091 - 112,373,739 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,984,531 - 119,012,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,988,053 - 119,012,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,325,190 - 118,353,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,099,763 - 115,119,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18115,119,118 - 115,139,954 (-)NCBI
Celera8109,981,641 - 110,001,215 (-)NCBICelera
Cytogenetic Map8q32NCBI
PTH1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2246,838,269 - 46,860,276 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1346,843,039 - 46,865,045 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0346,777,945 - 46,804,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1347,882,369 - 47,905,573 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,894,901 - 47,905,431 (+)Ensemblpanpan1.1panPan2
PTH1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,905,265 - 41,924,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,905,273 - 41,925,794 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,821,510 - 41,840,986 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02042,386,625 - 42,411,859 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2042,387,839 - 42,407,309 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,629,493 - 41,648,962 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,030,456 - 42,049,920 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,311,419 - 42,330,892 (-)NCBIUU_Cfam_GSD_1.0
Pth1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,124,949 - 201,144,052 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936596674,088 - 693,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936596674,088 - 693,191 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTH1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,753,326 - 29,775,348 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,749,940 - 29,775,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,998,092 - 33,023,626 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTH1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,287,877 - 8,309,736 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,289,398 - 8,311,256 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041158,837,510 - 158,863,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pth1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473074,371,294 - 74,390,262 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473074,371,614 - 74,392,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020772   ⟹   ENSCLAP00000020574
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542025,273,431 - 25,296,471 (-)Ensembl
RefSeq Acc Id: XM_013513585   ⟹   XP_013369039
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542025,274,269 - 25,291,984 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020574
  ENSCLAP00000020574.1
RefSeq Acc Id: XP_013369039   ⟸   XM_013513585
- UniProtKB: A0A8C2YSR3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020574   ⟸   ENSCLAT00000020772

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020772 ENTREZGENE
  ENSCLAT00000020772.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1240.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_2 UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_parathyroid_rcpt UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/TrEMBL
NCBI Gene Pth1r ENTREZGENE
PANTHER PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR45620:SF27 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
PRINTS GPCRSECRETIN UniProtKB/TrEMBL
  PTRHORMONER UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
SMART HormR UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  SSF111418 UniProtKB/TrEMBL
UniProt A0A8C2YSR3 ENTREZGENE, UniProtKB/TrEMBL