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Gene: Ccdc80 (coiled-coil domain containing 80) Rattus norvegicus
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Symbol: Ccdc80
Name: coiled-coil domain containing 80
Description: Predicted to have fibronectin binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization; positive regulation of cell-substrate adhesion; and response to bacterium. Predicted to localize to the basement membrane and interstitial matrix. Orthologous to human CCDC80 (coiled-coil domain containing 80); INTERACTS WITH (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CL2; coiled-coil domain-containing protein 80; down-regulated by oncogenes 1 protein; Dro1; SSG-1; Ssg1; steroid sensitive gene 1; steroid sensitive gene-1 protein; steroid-sensitive gene 1 protein
Orthologs:
Homo sapiens (human) : CCDC80 (coiled-coil domain containing 80)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc80 (coiled-coil domain containing 80)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc80 (coiled-coil domain containing 80)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC80 (coiled-coil domain containing 80)
Canis lupus familiaris (dog) : CCDC80 (coiled-coil domain containing 80)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc80 (coiled-coil domain containing 80)
Sus scrofa (pig) : CCDC80 (coiled-coil domain containing 80)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01160,645,660 - 60,679,249 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,645,086 - 60,679,555 (-)Ensembl
Rnor_5.01164,747,815 - 64,781,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,222,551 - 57,257,162 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11157,280,642 - 57,314,846 (-)NCBI
Celera1155,250,971 - 55,284,620 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ccdc80
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 69421
Created: 2001-11-27
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.