TMEM161B-DT (TMEM161B divergent transcript)

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Gene: TMEM161B-DT (TMEM161B divergent transcript) Homo sapiens

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Symbol:

TMEM161B-DT

Name:

TMEM161B divergent transcript

RGD ID:

6480801

HGNC Page

HGNC:43839

Description:

INTERACTS WITH 2-hydroxypropanoic acid; bisphenol A; cisplatin

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

linc-POLR3G-8; TMEM161B antisense RNA 1; TMEM161B-AS1

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	88,268,882 - 88,436,674 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	88,268,843 - 88,439,337 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	87,564,699 - 87,732,491 (+)	ENTREZGENE	GRCh37	GRCh37	hg19	GRCh37
Celera	5	83,456,511 - 83,625,438 (+)	NCBI		Celera
Cytogenetic Map	5	q14.3	NCBI
HuRef	5	82,768,519 - 82,936,849 (+)	ENTREZGENE		HuRef
CHM1_1	5	86,997,405 - 87,165,234 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	88,749,932 - 88,917,732 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2-hydroxypropanoic acid (EXP)

bisphenol A (EXP)

cisplatin (EXP)

dorsomorphin (EXP)

entinostat (EXP)

fulvestrant (EXP)

nickel atom (EXP)

phenylmercury acetate (EXP)

rac-lactic acid (EXP)

rotenone (EXP)

SB 431542 (EXP)

sunitinib (EXP)

valproic acid (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:15146197	PMID:16344560	PMID:21890647	PMID:34046994

Genomics

Variants

Variants in TMEM161B-DT
31 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
NR_039993.1(TMEM161B-AS1):n.206+34322A>G	single nucleotide variant	Lung cancer [RCV000096265]	Chr5:88304907 [GRCh38] Chr5:87600724 [GRCh37] Chr5:5q14.3	uncertain significance
GRCh38/hg38 5q14.3-21.1(chr5:85966055-101335711)x1	copy number loss	See cases [RCV000135748]	Chr5:85966055..101335711 [GRCh38] Chr5:85261873..100671415 [GRCh37] Chr5:85297629..100699314 [NCBI36] Chr5:5q14.3-21.1	pathogenic
GRCh38/hg38 5q14.3(chr5:87191898-89957449)x1	copy number loss	See cases [RCV000135596]	Chr5:87191898..89957449 [GRCh38] Chr5:86487715..89253266 [GRCh37] Chr5:86523471..89289022 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3-15(chr5:88197732-93193163)x3	copy number gain	See cases [RCV000136732]	Chr5:88197732..93193163 [GRCh38] Chr5:87493549..92528869 [GRCh37] Chr5:87529305..92554625 [NCBI36] Chr5:5q14.3-15	pathogenic
GRCh38/hg38 5q14.3-22.1(chr5:84603580-111435081)x1	copy number loss	See cases [RCV000139656]	Chr5:84603580..111435081 [GRCh38] Chr5:83899398..110770779 [GRCh37] Chr5:83935154..110798678 [NCBI36] Chr5:5q14.3-22.1	pathogenic
GRCh38/hg38 5q14.3(chr5:86766959-92148845)x1	copy number loss	See cases [RCV000141419]	Chr5:86766959..92148845 [GRCh38] Chr5:86062776..91444662 [GRCh37] Chr5:86098532..91480418 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3(chr5:88368289-92363231)x1	copy number loss	See cases [RCV000140963]	Chr5:88368289..92363231 [GRCh38] Chr5:87664106..91698938 [GRCh37] Chr5:87699862..91724694 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3(chr5:85876480-88958682)x1	copy number loss	See cases [RCV000051010]	Chr5:85876480..88958682 [GRCh38] Chr5:85172298..88254499 [GRCh37] Chr5:85208054..88290255 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3-21.1(chr5:87376883-101524443)x1	copy number loss	See cases [RCV000050945]	Chr5:87376883..101524443 [GRCh38] Chr5:86672700..100860147 [GRCh37] Chr5:86708456..100888046 [NCBI36] Chr5:5q14.3-21.1	pathogenic
GRCh38/hg38 5q13.3-22.1(chr5:74163186-110809453)x3	copy number gain	See cases [RCV000051839]	Chr5:74163186..110809453 [GRCh38] Chr5:73459011..110145153 [GRCh37] Chr5:73494767..110173052 [NCBI36] Chr5:5q13.3-22.1	pathogenic
GRCh38/hg38 5q14.3-15(chr5:87124838-93383020)x3	copy number gain	See cases [RCV000051840]	Chr5:87124838..93383020 [GRCh38] Chr5:86420655..92718726 [GRCh37] Chr5:86456411..92744482 [NCBI36] Chr5:5q14.3-15	pathogenic
GRCh38/hg38 5q14.3(chr5:86343721-88779835)x1	copy number loss	See cases [RCV000053475]	Chr5:86343721..88779835 [GRCh38] Chr5:85639539..88075652 [GRCh37] Chr5:85675295..88111408 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3(chr5:86743723-92337264)x1	copy number loss	See cases [RCV000053477]	Chr5:86743723..92337264 [GRCh38] Chr5:86039540..91633081 [GRCh37] Chr5:86075296..91668837 [NCBI36] Chr5:5q14.3	pathogenic
GRCh38/hg38 5q14.3-15(chr5:88189536-93784597)x1	copy number loss	Intellectual disability, autosomal dominant 20 [RCV003327617]	Chr5:88189536..93784597 [GRCh38] Chr5:5q14.3-15	pathogenic
GRCh38/hg38 5q14.3(chr5:86235182-91734581)	copy number loss	5q14.3 microdeletion [RCV004555166]	Chr5:86235182..91734581 [GRCh38] Chr5:5q14.3	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1186
Count of miRNA genes:	696
Interacting mature miRNAs:	782
Transcripts:	ENST00000496733, ENST00000501715, ENST00000501869, ENST00000504636, ENST00000504769, ENST00000504922, ENST00000506584, ENST00000507736, ENST00000508015, ENST00000510087, ENST00000512724, ENST00000513011, ENST00000513694
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
407226437	GWAS875413_H	bone density QTL GWAS875413 (human)		1e-300	bone mineral mass (VT:0005007)	bone mineral density (CMO:0001226)	5	88409655	88409656	Human
407323590	GWAS972566_H	C-reactive protein measurement QTL GWAS972566 (human)		7e-09	C-reactive protein measurement	blood C-reactive protein level (CMO:0003160)	5	88401716	88401717	Human
407056578	GWAS705554_H	body mass index QTL GWAS705554 (human)		1e-09	body mass index	body mass index (BMI) (CMO:0000105)	5	88404598	88404599	Human
407125063	GWAS774039_H	body mass index QTL GWAS774039 (human)		7e-25	body mass index	body mass index (BMI) (CMO:0000105)	5	88387060	88387061	Human
406962631	GWAS611607_H	sodium measurement QTL GWAS611607 (human)		2e-10	sodium measurement	blood sodium level (CMO:0000499)	5	88387060	88387061	Human
407226947	GWAS875923_H	body mass index QTL GWAS875923 (human)		7e-10	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407131725	GWAS780701_H	body mass index QTL GWAS780701 (human)		0.0000008	physical activity measurement, body mass index	voluntary body movement measurement (CMO:0000954)	5	88401716	88401717	Human
407231951	GWAS880927_H	depressive symptom measurement QTL GWAS880927 (human)		3e-09	depressive symptom measurement		5	88296420	88296421	Human
407062862	GWAS711838_H	obsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, unipolar depression, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa QTL GWAS711838 (human)		3e-09	unipolar depression		5	88334952	88334953	Human
407251144	GWAS900120_H	type 2 diabetes mellitus QTL GWAS900120 (human)		6e-09	type 2 diabetes mellitus		5	88401716	88401717	Human
407153366	GWAS802342_H	retinal vasculature measurement QTL GWAS802342 (human)		0.0000002	retina blood vessel morphology trait (VT:0002792)		5	88430746	88430747	Human
407052368	GWAS701344_H	insomnia measurement QTL GWAS701344 (human)		7e-08	insomnia measurement		5	88382768	88382769	Human
407162583	GWAS811559_H	body mass index QTL GWAS811559 (human)		0.0000007	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407148119	GWAS797095_H	smoking initiation QTL GWAS797095 (human)		5e-10	smoking initiation		5	88433894	88433895	Human
407375068	GWAS1024044_H	smoking initiation QTL GWAS1024044 (human)		1e-19	smoking initiation		5	88416702	88416703	Human
407343583	GWAS992559_H	insomnia QTL GWAS992559 (human)		2e-18	insomnia		5	88308057	88308058	Human
407381457	GWAS1030433_H	insomnia measurement QTL GWAS1030433 (human)		3e-11	insomnia measurement		5	88364163	88364164	Human
407373266	GWAS1022242_H	unipolar depression QTL GWAS1022242 (human)		1e-15	unipolar depression		5	88367793	88367794	Human
407341916	GWAS990892_H	mathematical ability QTL GWAS990892 (human)		3e-11	mathematical ability		5	88401716	88401717	Human
407311193	GWAS960169_H	fat body mass QTL GWAS960169 (human)		2e-15	body fat mass (VT:0010482)	total body fat mass (CMO:0000305)	5	88387060	88387061	Human
407402967	GWAS1051943_H	chronotype measurement QTL GWAS1051943 (human)		3e-19	chronotype measurement		5	88301195	88301196	Human
407090140	GWAS739116_H	body mass index QTL GWAS739116 (human)		9e-34	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407310692	GWAS959668_H	fat body mass QTL GWAS959668 (human)		1e-14	body fat mass (VT:0010482)	total body fat mass (CMO:0000305)	5	88303001	88303002	Human
407306213	GWAS955189_H	body mass index QTL GWAS955189 (human)		1e-15	body mass index	body mass index (BMI) (CMO:0000105)	5	88303001	88303002	Human
407255010	GWAS903986_H	fatty acid measurement QTL GWAS903986 (human)		2e-08	fatty acid measurement		5	88399852	88399853	Human
407379309	GWAS1028285_H	body mass index QTL GWAS1028285 (human)		5e-18	body mass index	body mass index (BMI) (CMO:0000105)	5	88434210	88434211	Human
406893158	GWAS542134_H	brain volume measurement QTL GWAS542134 (human)		3e-08	brain volume measurement	brain morphological measurement (CMO:0000136)	5	88409465	88409466	Human
407343584	GWAS992560_H	insomnia QTL GWAS992560 (human)		3e-08	insomnia		5	88392604	88392605	Human
407252458	GWAS901434_H	body height QTL GWAS901434 (human)		2e-16	body height (VT:0001253)	body height (CMO:0000106)	5	88401716	88401717	Human
406966510	GWAS615486_H	smoking initiation QTL GWAS615486 (human)		1e-13	smoking initiation		5	88416702	88416703	Human
407043314	GWAS692290_H	attention deficit hyperactivity disorder, irritable bowel syndrome QTL GWAS692290 (human)		9e-11	attention deficit hyperactivity disorder, irritable bowel syndrome		5	88389683	88389684	Human
407140340	GWAS789316_H	physical activity measurement, body mass index QTL GWAS789316 (human)		3e-08	physical activity measurement, body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407415672	GWAS1064648_H	docosahexaenoic acid measurement, fatty acid measurement QTL GWAS1064648 (human)		1e-08	fatty acid amount (VT:0010046)	blood free fatty acids level (CMO:0000117)	5	88417096	88417097	Human
407051762	GWAS700738_H	substance-related disorder QTL GWAS700738 (human)		4e-09	substance-related disorder		5	88416702	88416703	Human
406966514	GWAS615490_H	cannabis dependence QTL GWAS615490 (human)		3e-08	cannabis dependence		5	88416702	88416703	Human
406951029	GWAS600005_H	body mass index QTL GWAS600005 (human)		1e-26	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407047542	GWAS696518_H	educational attainment QTL GWAS696518 (human)		2e-43	educational attainment		5	88433894	88433895	Human
407380850	GWAS1029826_H	chronotype measurement QTL GWAS1029826 (human)		4e-14	chronotype measurement		5	88365776	88365777	Human
407300221	GWAS949197_H	lean body mass QTL GWAS949197 (human)		1e-14	body lean mass (VT:0010483)	total body lean mass (CMO:0003950)	5	88387060	88387061	Human
407373429	GWAS1022405_H	smoking cessation QTL GWAS1022405 (human)		2e-09	smoking cessation		5	88385177	88385178	Human
407217784	GWAS866760_H	smoking status measurement QTL GWAS866760 (human)		3e-31	smoking status measurement		5	88417014	88417015	Human
407370744	GWAS1019720_H	neuroticism measurement QTL GWAS1019720 (human)		2e-11	neuroticism measurement		5	88351767	88351768	Human
406944510	GWAS593486_H	smoking initiation QTL GWAS593486 (human)		4e-10	smoking initiation		5	88379614	88379615	Human
407129220	GWAS778196_H	complex trait QTL GWAS778196 (human)		2e-11	complex trait		5	88399852	88399853	Human
406965635	GWAS614611_H	albuminuria QTL GWAS614611 (human)		0.000004	albuminuria		5	88363221	88363222	Human
407404810	GWAS1053786_H	leukocyte count QTL GWAS1053786 (human)		0.0000001	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	88417096	88417097	Human
407243010	GWAS891986_H	retinal vasculature measurement QTL GWAS891986 (human)		3e-08	retina blood vessel morphology trait (VT:0002792)		5	88291168	88291169	Human
407141760	GWAS790736_H	physical activity measurement, body mass index QTL GWAS790736 (human)		0.0000001	physical activity measurement, body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407299200	GWAS948176_H	lean body mass QTL GWAS948176 (human)		2e-14	body lean mass (VT:0010483)	total body lean mass (CMO:0003950)	5	88407282	88407283	Human
406895623	GWAS544599_H	body surface area QTL GWAS544599 (human)		1e-16	body surface area		5	88387060	88387061	Human
407383439	GWAS1032415_H	insomnia measurement QTL GWAS1032415 (human)		9e-16	insomnia measurement		5	88397744	88397745	Human
407070340	GWAS719316_H	alcohol consumption measurement QTL GWAS719316 (human)		2e-08	alcohol consumption measurement	ethanol drink intake rate (CMO:0001407)	5	88418887	88418888	Human
407158540	GWAS807516_H	retinal vasculature measurement QTL GWAS807516 (human)		4e-14	retina blood vessel morphology trait (VT:0002792)		5	88430746	88430747	Human
406958732	GWAS607708_H	C-reactive protein measurement QTL GWAS607708 (human)		2e-08	C-reactive protein measurement	blood C-reactive protein level (CMO:0003160)	5	88387060	88387061	Human
407238795	GWAS887771_H	bone density QTL GWAS887771 (human)		2e-244	bone mineral mass (VT:0005007)	bone mineral density (CMO:0001226)	5	88288916	88288917	Human
407216779	GWAS865755_H	depressive symptom measurement QTL GWAS865755 (human)		6e-11	depressive symptom measurement		5	88337941	88337942	Human
407061133	GWAS710109_H	attention deficit hyperactivity disorder, substance abuse, antisocial behaviour measurement QTL GWAS710109 (human)		4e-32	attention deficit hyperactivity disorder, substance abuse, antisocial behaviour measurement		5	88389683	88389684	Human
407031180	GWAS680156_H	unipolar depression QTL GWAS680156 (human)		5e-12	unipolar depression		5	88391761	88391762	Human
407176458	GWAS825434_H	visceral adipose tissue measurement QTL GWAS825434 (human)		3e-13	visceral adipose tissue measurement	abdominal fat morphological measurement (CMO:0000311)	5	88401716	88401717	Human
407304726	GWAS953702_H	body mass index QTL GWAS953702 (human)		9e-17	body mass index	body mass index (BMI) (CMO:0000105)	5	88387060	88387061	Human
406956689	GWAS605665_H	sodium measurement QTL GWAS605665 (human)		2e-09	sodium measurement	blood sodium level (CMO:0000499)	5	88387060	88387061	Human
407375518	GWAS1024494_H	caudate nucleus volume QTL GWAS1024494 (human)		0.000009	caudate nucleus volume		5	88409451	88409452	Human
407382801	GWAS1031777_H	type 2 diabetes mellitus QTL GWAS1031777 (human)		7e-09	type 2 diabetes mellitus		5	88409451	88409452	Human
407379986	GWAS1028962_H	refractive error QTL GWAS1028962 (human)		5e-09	refractive error		5	88417096	88417097	Human
406998684	GWAS647660_H	body mass index QTL GWAS647660 (human)		3e-10	body mass index	body mass index (BMI) (CMO:0000105)	5	88303001	88303002	Human
407267750	GWAS916726_H	retinal vasculature measurement QTL GWAS916726 (human)		4e-15	retina blood vessel morphology trait (VT:0002792)		5	88291168	88291169	Human
407383336	GWAS1032312_H	smoking status measurement QTL GWAS1032312 (human)		0.000004	smoking status measurement		5	88367793	88367794	Human
407386024	GWAS1035000_H	schizophrenia QTL GWAS1035000 (human)		1e-09	schizophrenia		5	88431287	88431288	Human
407304740	GWAS953716_H	body mass index QTL GWAS953716 (human)		1e-16	body mass index	body mass index (BMI) (CMO:0000105)	5	88407282	88407283	Human
407380395	GWAS1029371_H	chronotype measurement QTL GWAS1029371 (human)		5e-10	chronotype measurement		5	88359845	88359846	Human
407215648	GWAS864624_H	wellbeing measurement QTL GWAS864624 (human)		4e-10	wellbeing measurement		5	88337941	88337942	Human
407143330	GWAS792306_H	body mass index QTL GWAS792306 (human)		0.000005	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407139363	GWAS788339_H	physical activity measurement, body mass index QTL GWAS788339 (human)		4e-08	physical activity measurement, body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407419695	GWAS1068671_H	C-reactive protein measurement QTL GWAS1068671 (human)		2e-11	C-reactive protein measurement	blood C-reactive protein level (CMO:0003160)	5	88407567	88407568	Human
407272878	GWAS921854_H	depressive symptom measurement QTL GWAS921854 (human)		3e-09	depressive symptom measurement		5	88280322	88280323	Human
407371936	GWAS1020912_H	chronotype measurement QTL GWAS1020912 (human)		6e-20	chronotype measurement		5	88405406	88405407	Human
407377696	GWAS1026672_H	health study participation QTL GWAS1026672 (human)		3e-09	health study participation		5	88417096	88417097	Human
407209644	GWAS858620_H	neuroticism measurement QTL GWAS858620 (human)		1e-10	neuroticism measurement		5	88337941	88337942	Human
406894505	GWAS543481_H	smoking initiation QTL GWAS543481 (human)		3e-37	smoking initiation		5	88435952	88435953	Human
407213615	GWAS862591_H	comparative body size at age 10, self-reported QTL GWAS862591 (human)		9e-10	comparative body size at age 10, self-reported		5	88303001	88303002	Human
407204651	GWAS853627_H	bitter alcoholic beverage consumption measurement QTL GWAS853627 (human)		8e-11	bitter alcoholic beverage consumption measurement	drink intake measurement (CMO:0000771)	5	88366503	88366504	Human
407384614	GWAS1033590_H	intelligence QTL GWAS1033590 (human)		0.000002	intelligence		5	88417096	88417097	Human
407379751	GWAS1028727_H	anxiety QTL GWAS1028727 (human)		5e-08	anxiety		5	88370488	88370489	Human
407130923	GWAS779899_H	body mass index QTL GWAS779899 (human)		0.0000004	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407052083	GWAS701059_H	insomnia measurement QTL GWAS701059 (human)		3e-08	insomnia measurement		5	88382768	88382769	Human
407311412	GWAS960388_H	fat body mass QTL GWAS960388 (human)		3e-15	body fat mass (VT:0010482)	total body fat mass (CMO:0000305)	5	88407282	88407283	Human
407218480	GWAS867456_H	chronotype measurement QTL GWAS867456 (human)		6e-08	chronotype measurement		5	88365776	88365777	Human
407299507	GWAS948483_H	body mass index QTL GWAS948483 (human)		9e-12	body mass index	body mass index (BMI) (CMO:0000105)	5	88401716	88401717	Human
407375165	GWAS1024141_H	mathematical ability QTL GWAS1024141 (human)		4e-10	mathematical ability		5	88407282	88407283	Human
407069620	GWAS718596_H	smoking status measurement QTL GWAS718596 (human)		5e-26	smoking status measurement		5	88389683	88389684	Human
407375807	GWAS1024783_H	putamen volume QTL GWAS1024783 (human)		4e-09	putamen volume	brain weight (CMO:0000137)	5	88409451	88409452	Human
407226418	GWAS875394_H	bone density QTL GWAS875394 (human)		1e-300	bone mineral mass (VT:0005007)	bone mineral density (CMO:0001226)	5	88427212	88427213	Human

Markers in Region

RH103517

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	87,732,137 - 87,732,272	UniSTS	GRCh37
Build 36	5	87,767,893 - 87,768,028	RGD	NCBI36
Celera	5	83,625,084 - 83,625,219	RGD
HuRef	5	82,936,495 - 82,936,630	UniSTS

G42183

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	87,581,586 - 87,581,717	UniSTS	GRCh37
Build 36	5	87,617,342 - 87,617,473	RGD	NCBI36
Celera	5	83,473,398 - 83,473,529	RGD
HuRef	5	82,785,451 - 82,785,582	UniSTS

D5S2566

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	87,579,721 - 87,579,813	UniSTS	GRCh37
Build 36	5	87,615,477 - 87,615,569	RGD	NCBI36
Celera	5	83,471,533 - 83,471,625	RGD
HuRef	5	82,783,586 - 82,783,678	UniSTS
TNG Radiation Hybrid Map	5	39944.0	UniSTS
Stanford-G3 RH Map	5	3334.0	UniSTS
NCBI RH Map	5	565.3	UniSTS

G29279

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	87,625,564 - 87,625,677	UniSTS	GRCh37
Build 36	5	87,661,320 - 87,661,433	RGD	NCBI36
Celera	5	83,517,411 - 83,517,524	RGD
HuRef	5	82,829,453 - 82,829,566	UniSTS

D5S2855

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	87,583,936 - 87,584,172	UniSTS	GRCh37
Build 36	5	87,619,692 - 87,619,928	RGD	NCBI36
Celera	5	83,475,748 - 83,475,988	RGD
HuRef	5	82,787,802 - 82,788,034	UniSTS
Marshfield Genetic Map	5	97.82	UniSTS
deCODE Assembly Map	5	103.14	UniSTS

SGC34350

Human Assembly	Chr	Position (strand)	Source	JBrowse
GeneMap99-GB4 RH Map	5	401.13	UniSTS
Whitehead-RH Map	5	295.8	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1950	465	2270	7305	6471	53	3734	1	852	1744	1617	174	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_039993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_039994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_039995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_105019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_105020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC010243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC016555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC091826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC114978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC047059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF056341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF672668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM719684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN260565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA317999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA782199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY089208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000496733

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,039 - 88,276,222 (+)	Ensembl

Ensembl Acc Id:

ENST00000501715

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000501869

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,891 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000504636

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,996 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000504769

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,286,067 (+)	Ensembl

Ensembl Acc Id:

ENST00000504922

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,843 - 88,438,050 (+)	Ensembl

Ensembl Acc Id:

ENST00000506584

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,047 - 88,287,656 (+)	Ensembl

Ensembl Acc Id:

ENST00000507736

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,038 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000508015

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,195 - 88,418,049 (+)	Ensembl

Ensembl Acc Id:

ENST00000510087

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,042 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000512724

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,050 - 88,292,755 (+)	Ensembl

Ensembl Acc Id:

ENST00000513011

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,895 - 88,271,225 (+)	Ensembl

Ensembl Acc Id:

ENST00000513694

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,039 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000653183

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,282,720 - 88,347,574 (+)	Ensembl

Ensembl Acc Id:

ENST00000653898

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,028 - 88,293,232 (+)	Ensembl

Ensembl Acc Id:

ENST00000653918

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,977 - 88,296,332 (+)	Ensembl

Ensembl Acc Id:

ENST00000654762

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,899 - 88,436,922 (+)	Ensembl

Ensembl Acc Id:

ENST00000655966

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,273,135 (+)	Ensembl

Ensembl Acc Id:

ENST00000656152

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,034 - 88,292,275 (+)	Ensembl

Ensembl Acc Id:

ENST00000656195

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,408,981 - 88,436,665 (+)	Ensembl

Ensembl Acc Id:

ENST00000656903

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,929 - 88,272,990 (+)	Ensembl

Ensembl Acc Id:

ENST00000657491

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,281,851 - 88,283,586 (+)	Ensembl

Ensembl Acc Id:

ENST00000657617

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,073 - 88,427,376 (+)	Ensembl

Ensembl Acc Id:

ENST00000657972

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,000 - 88,437,089 (+)	Ensembl

Ensembl Acc Id:

ENST00000658094

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,915 - 88,294,850 (+)	Ensembl

Ensembl Acc Id:

ENST00000658478

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,868 - 88,439,332 (+)	Ensembl

Ensembl Acc Id:

ENST00000658611

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,293,238 (+)	Ensembl

Ensembl Acc Id:

ENST00000659005

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,996 - 88,285,330 (+)	Ensembl

Ensembl Acc Id:

ENST00000659093

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,995 - 88,292,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000659215

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,036 - 88,294,547 (+)	Ensembl

Ensembl Acc Id:

ENST00000659938

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,036 - 88,286,977 (+)	Ensembl

Ensembl Acc Id:

ENST00000660783

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,287,016 (+)	Ensembl

Ensembl Acc Id:

ENST00000661351

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000661377

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,871 - 88,285,345 (+)	Ensembl

Ensembl Acc Id:

ENST00000661627

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,917 - 88,323,471 (+)	Ensembl

Ensembl Acc Id:

ENST00000662970

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,007 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000663476

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,917 - 88,292,960 (+)	Ensembl

Ensembl Acc Id:

ENST00000663490

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,929 - 88,293,209 (+)	Ensembl

Ensembl Acc Id:

ENST00000664347

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,899 - 88,274,314 (+)	Ensembl

Ensembl Acc Id:

ENST00000664462

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,286,771 (+)	Ensembl

Ensembl Acc Id:

ENST00000664546

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,923 - 88,294,980 (+)	Ensembl

Ensembl Acc Id:

ENST00000665319

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,073 - 88,439,337 (+)	Ensembl

Ensembl Acc Id:

ENST00000665517

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,409,292 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000665926

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,038 - 88,283,049 (+)	Ensembl

Ensembl Acc Id:

ENST00000666577

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,899 - 88,293,224 (+)	Ensembl

Ensembl Acc Id:

ENST00000666808

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,010 - 88,287,092 (+)	Ensembl

Ensembl Acc Id:

ENST00000667127

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,078 - 88,290,200 (+)	Ensembl

Ensembl Acc Id:

ENST00000667139

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,033 - 88,293,230 (+)	Ensembl

Ensembl Acc Id:

ENST00000667511

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,038 - 88,285,622 (+)	Ensembl

Ensembl Acc Id:

ENST00000668037

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000668128

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,281,073 - 88,287,616 (+)	Ensembl

Ensembl Acc Id:

ENST00000668471

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,987 - 88,348,601 (+)	Ensembl

Ensembl Acc Id:

ENST00000669353

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,871 - 88,287,627 (+)	Ensembl

Ensembl Acc Id:

ENST00000669465

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,036 - 88,293,230 (+)	Ensembl

Ensembl Acc Id:

ENST00000669796

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,047 - 88,284,693 (+)	Ensembl

Ensembl Acc Id:

ENST00000670030

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,015 - 88,286,802 (+)	Ensembl

Ensembl Acc Id:

ENST00000670451

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,016 - 88,293,988 (+)	Ensembl

Ensembl Acc Id:

ENST00000670873

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,019 - 88,293,988 (+)	Ensembl

Ensembl Acc Id:

ENST00000671394

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,996 - 88,439,300 (+)	Ensembl

Ensembl Acc Id:

ENST00000684909

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,023 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000685962

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,270,500 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000686847

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,092 - 88,437,262 (+)	Ensembl

Ensembl Acc Id:

ENST00000686930

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000688087

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,891 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000688118

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,905 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000688398

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,996 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000688523

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,913 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000689901

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,891 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000692797

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,020 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000693402

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000702628

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,891 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787430

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,913 - 88,437,091 (+)	Ensembl

Ensembl Acc Id:

ENST00000787431

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,871 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000787432

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,871 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787433

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,913 - 88,436,675 (+)	Ensembl

Ensembl Acc Id:

ENST00000787434

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,913 - 88,436,669 (+)	Ensembl

Ensembl Acc Id:

ENST00000787435

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,973 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787436

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000787437

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,436,674 (+)	Ensembl

Ensembl Acc Id:

ENST00000787438

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,083 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787439

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,179 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787440

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,194 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787441

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,917 - 88,347,317 (+)	Ensembl

Ensembl Acc Id:

ENST00000787442

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,957 - 88,347,317 (+)	Ensembl

Ensembl Acc Id:

ENST00000787443

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,021 - 88,326,081 (+)	Ensembl

Ensembl Acc Id:

ENST00000787444

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,390,322 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787445

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,390,370 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787446

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,180 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787447

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,201 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787448

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,275 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787449

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,275 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787450

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,275 - 88,436,672 (+)	Ensembl

Ensembl Acc Id:

ENST00000787451

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,392,275 - 88,436,669 (+)	Ensembl

Ensembl Acc Id:

ENST00000787452

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,879 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787453

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,913 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787454

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,924 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787455

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,928 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787456

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,953 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787457

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,971 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000787458

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,978 - 88,287,655 (+)	Ensembl

Ensembl Acc Id:

ENST00000787459

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,996 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787460

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,268,998 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000787461

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787462

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,026 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787463

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,026 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787464

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,027 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787465

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,028 - 88,287,655 (+)	Ensembl

Ensembl Acc Id:

ENST00000787466

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000787467

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,024 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000787468

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,037 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787469

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,038 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787470

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,035 - 88,287,651 (+)	Ensembl

Ensembl Acc Id:

ENST00000787471

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,034 - 88,287,650 (+)	Ensembl

Ensembl Acc Id:

ENST00000787472

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,042 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787473

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,078 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787474

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,270,526 - 88,287,657 (+)	Ensembl

Ensembl Acc Id:

ENST00000787475

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	88,269,026 - 88,282,140 (+)	Ensembl

RefSeq Acc Id:

NR_039993

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,268,882 - 88,436,674 (+)	NCBI
GRCh37	5	87,564,699 - 87,732,491 (+)	ENTREZGENE
HuRef	5	82,768,519 - 82,936,849 (+)	ENTREZGENE
CHM1_1	5	86,997,405 - 87,165,234 (+)	NCBI
T2T-CHM13v2.0	5	88,749,932 - 88,917,732 (+)	NCBI

Sequence:

show sequence

CCCTTCTCCAGAGCGCCGTCGACCCCACGCCACGCAGAGGTGAAGATACGCAGGACGTCCTCTA
AAGCAACTTCCGTGGGTGCCAGGTTGTGGGCTGGGGGCGGTGCTGACCTTGAGAGAGCGGAGGA
GGCGCAGGCGCAGCACAGTTTAAACTTGATTTTGTGAGGGGACGAACAGCGTGACAATTAAAAG
AAGATCTGGGAATCATCCAATGTGATAATTTATGTGAAATCTTTCTGCAAACTATACAGTATGA
TAAAAATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAGAAGCTGATGTGACGTGGCAATA
TCAACCAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTCACCGAC
CACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACAAGCTAA
TCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGTGCTGCC
TTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCTTGCGTA
ATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTATGTTCC
TCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATTAAATAA
ACATGGAATTTTACACATTCATAATAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_039994

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,269,016 - 88,436,674 (+)	NCBI
GRCh37	5	87,564,699 - 87,732,491 (+)	ENTREZGENE
HuRef	5	82,768,519 - 82,936,849 (+)	ENTREZGENE
CHM1_1	5	86,997,539 - 87,165,234 (+)	NCBI
T2T-CHM13v2.0	5	88,750,066 - 88,917,732 (+)	NCBI

Sequence:

show sequence

GGCGCAGCACAGGTACGTGGGCGGGCGGATCGTGGTGGCTGCGCTTGCGAGGACCCTGAGGTAG
ATTGGGTGGTTTCAACAGGAACGCATCCACTGTCTGAGAGTTTAAACTTGATTTTGTGAGGGGA
CGAACAGCGTGACAATTAAAAGAAGATCTGGGAATCATCCAATGTGATAATTTATGTGAAATCT
TTCTGCAAACTATACAGTATGATAAAAATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAG
AAGCTGATGTGACGTGGCAATATCAACCAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTG
AGAAGGTGCCCATGTCACCGACCACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGG
TAGCTAAGTGTGGACAAGCTAATCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAG
TTGGATGAAAGACTGTGCTGCCTTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCT
TTATTGTTGAAACTCTTGCGTAATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAAC
TATATGATATTGTTTATGTTCCTCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAA
CTGTGTGACTGATATTAAATAAACATGGAATTTTACACATTCATAATAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_039995

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,268,882 - 88,436,674 (+)	NCBI
GRCh37	5	87,564,699 - 87,732,491 (+)	ENTREZGENE
HuRef	5	82,768,519 - 82,936,849 (+)	ENTREZGENE
CHM1_1	5	86,997,405 - 87,165,234 (+)	NCBI
T2T-CHM13v2.0	5	88,749,932 - 88,917,732 (+)	NCBI

Sequence:

show sequence

CCCTTCTCCAGAGCGCCGTCGACCCCACGCCACGCAGAGGTGAAGATACGCAGGACGTCCTCTA
AAGCAACTTCCGTGGGTGCCAGGTTGTGGGCTGGGGGCGGTGCTGACCTTGAGAGAGCGGAGGA
GGCGCAGGCGCAGCACAGTTTAAACTTGATTTTGTGAGGGGACGAACAGCGTGACAATTAAAAG
AAGATCTGGGAATCGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTC
ACCGACCACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACA
AGCTAATCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGT
GCTGCCTTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCT
TGCGTAATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTA
TGTTCCTCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATT
AAATAAACATGGAATTTTACACATTCATAATAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_105019

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,269,016 - 88,436,674 (+)	NCBI
HuRef	5	82,768,519 - 82,936,849 (+)	NCBI
CHM1_1	5	86,997,539 - 87,165,234 (+)	NCBI
T2T-CHM13v2.0	5	88,750,066 - 88,917,732 (+)	NCBI

Sequence:

show sequence

GGCGCAGCACAGGTACGTGGGCGGGCGGATCGTGGTGGCTGCGCTTGCGAGGACCCTGAGGTAG
ATTGGGTGGTTTCAACAGGAACGCATCCACTGTCTGAGAGTTTAAACTTGATTTTGTGAGGGGA
CGAACAGCGTGACAATTAAAAGAAGATCTGGGAATCAAAAGCTTCCTGAGGCCTTCACCAGAAG
CAGATGCTGGTGCCGTGCTTCTACAGCCTGCAGAACTAAGAGAAGACATGGAGAAGAGGAGGGA
GTAGTTGTGACCGTGGAGGCAGAGAATGGAGTAATGTGATCATAAATCAAGGAATGCTGACAGC
CACTAAAGCTGGAGAAGGCCAAGGACAGATATTCAATCCTCCCGTAGAAGTACAGCCCTGCTAA
TGCATTGATTTTGGACTTCTGGCCTCAGAACTATTTATATATCAGCTTTTTATCAGTTGAAATA
AACCACCCTGGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTC
TGGAAAGCATGGAAATTTGTATCTTCATTCACTTTTGTTTTCATGGACTCTTTTCATGTTTGAA
CTTTTCATGATCCAATGTGATAATTTATGTGAAATCTTTCTGCAAACTATACAGTATGATAAAA
ATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAGAAGCTGATGTGACGTGGCAATATCAAC
CAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTCACCGACCACAC
TGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACAAGCTAATCACT
GAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGTGCTGCCTTGAA
GCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCTTGCGTAATGAC
ATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTATGTTCCTCAGA
CATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATTAAATAAACATG
GAATTTTACACATTCATAATAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_105020

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,392,195 - 88,436,674 (+)	NCBI
HuRef	5	82,768,519 - 82,936,849 (+)	NCBI
CHM1_1	5	87,120,756 - 87,165,234 (+)	NCBI
T2T-CHM13v2.0	5	88,873,261 - 88,917,732 (+)	NCBI

Sequence:

show sequence

TTTGTTAGTTGACGATGCAATCAGCATGCTGATTAAGGTTGCTTGGTTTTTTACTAAACATTAA
CTGAATGAAAACGGGTAGTCCTTGTTCTGCTTGGGGGGCTTTAAGGAAGCAAATGGACTTTCAG
AACAGAGATTGTCAATAAAGATCCAATGTGATAATTTATGTGAAATCTTTCTGCAAACTATACA
GTATGATAAAAATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAGAAGCTGATGTGACGTG
GCAATATCAACCAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTC
ACCGACCACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACA
AGCTAATCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGT
GCTGCCTTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCT
TGCGTAATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTA
TGTTCCTCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATT
AAATAAACATGGAATTTTACACATTCATAATAAAAAAAAAA

hide sequence

Promoters

RGD ID:

15095899

Promoter ID:

EPDNEWNC_H741

Type:

initiation region

Name:

TMEM161B-AS1_1

Description:

TMEM161B antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:43839]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	88,269,026 - 88,269,086	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	TMEM161B-DT	COSMIC
Ensembl Genes	ENSG00000247828	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000501715	ENTREZGENE
	ENST00000689901	ENTREZGENE
	ENST00000787431	ENTREZGENE
	ENST00000787437	ENTREZGENE
	ENST00000787447	ENTREZGENE
GTEx	ENSG00000247828	GTEx
HGNC ID	HGNC:43839	ENTREZGENE
Human Proteome Map	TMEM161B-DT	Human Proteome Map
NCBI Gene	TMEM161B-AS1	ENTREZGENE
RNAcentral	URS000075A99B	RNACentral
	URS000075B297	RNACentral
	URS000075C0F2	RNACentral
	URS000075D38C	RNACentral
	URS000075EED9	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-05-03	TMEM161B-DT	TMEM161B divergent transcript	TMEM161B-AS1	TMEM161B antisense RNA 1	Symbol and/or name change	19259463	PROVISIONAL
2012-08-21	TMEM161B-AS1	TMEM161B antisense RNA 1	TMEM161B-AS1	TMEM161B antisense RNA 1 (non-protein coding)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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