GWAS1462145_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1462145_H (chronotype measurement QTL GWAS1462145 (human)) Homo sapiens

Symbol: GWAS1462145_H
Name: chronotype measurement QTL GWAS1462145 (human)
RGD ID: 597366071
Trait: sleep behavior trait   (VT:0001501)    
LOD Score: Not Available
P Value: 4.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38588,365,776 - 88,365,777RGD_MAPPER_PIPELINEGRCh38
GRCh37587,661,593 - 87,661,594RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1462145_HHumansleep behavior trait  IAGPrs12657776405850206Based on the EFO term IDGWAS_CATALOGPMID:30804565

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1462145_HHumanchronotype measurement  IAGPrs12657776405850206 GWAS_CATALOGPMID:30804565

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6480801TMEM161B-DTTMEM161B divergent transcript58826888288436674Human


Peak: (rs12657776)
Human AssemblyChrPosition (strand)Source
GRCh38588,365,776 - 88,365,777RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597470094GWAS1566168_Hchronotype measurement QTL GWAS1566168 (human)6e-08sleep behavior trait (VT:0001501)58836577688365777Human
597366071GWAS1462145_Hchronotype measurement QTL GWAS1462145 (human)4e-14sleep behavior trait (VT:0001501)58836577688365777Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1462145_H GCST007983 Morningness 434,835 European ancestry individuals A 0.7482 4E-14 13.398 rs12657776 0.019 chronotype measurement (EFO:0008328)
 PMID:30804565
GWAS1566168_H GCST007083 Morning person approximately 410,000 European ancestry individuals ? NR 6E-8 7.222 rs12657776 N/A chronotype measurement (EFO:0008328)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST007983 GWAS Catalog

Note Type Note Reference